Intro to DESeq2

Presented by Stacey Borrego

Presentation

Download the GitHub repository and open the HTML files. This folder contains the html and pdf versions of the tutorials and the data file used in the examples.

1. Go to the GitHub repository bioinformaticssg/Introduction-to-DESeq2
2. Click on the big green Clone or download button on the top right
3. Click Download Zip
4. The zip file Introduction-to-R-master.zip should now be in your download folder
5. Unzip and move to your desired location on your computer
6. Open Intro-to-DESeq2.html in your browser (usually clicking on the file will automatically open it in your browser)

Resources

• DESeq2 Manual
• RNA-seq workflow: gene-level exploratory analysis and differential expression
• Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2