Intro to Bioimage Understanding

Course Instructor

Sujoy Kumar Biswas

Researcher

Accelerated Discovery Lab

IBM Almaden Research Center

Joint Affiliation: NSF Center for Cellular Construction, UC San Francisco

Email: sbiswas(YOU KNOW THE CHARACTER)ucsc.edu

Acknowledgement

The material of this course is based upon work supported by the National Science Foundation under Grant No. DBI-1548297.

This course has been possible because of the excellent curiosity, enthusiasm, and hard work of the talented students who deserve a lot of the credits. The instructor thanks each of them. The instructor also extends his thanks to all members of NSF Center for Cellular Construction. The planning, design, and organization of the course materials would have not been possible without the strong encouragement and valuable feedback from Simone Bianco, IBM Research, Almaden.

Disclaimer: The entire materials of this course in addition to any opinions, findings and conclusions, or recommendations expressed in this material are those of the instructor and do not necessarily reflect the views of the National Science Foundation, Center for Cellular Construction, and IBM Corporation.

Special Thanks and Acknowledgement

Mark Chan, San Francisco State University
Diana Chu, San Francisco State University
Tatyana Makushok, UC San Francisco
Lucas Blauch, Stanford University
Vito Paolo Pastore, IBM Research
Jason Town, UC San Francisco
Brian Graziano, UC San Francisco

References

The instructor has borrowed materials extensively from various online resources. Despite the best effort sometimes glaring mistakes remain, kindly drop an email message in case there is any attribution missing.

ImageJ-Fiji
CellProfiler
ilastik (image data is courtesy of Daniel Gerlich)
Broad Bioimage Benchmark Collection
Stentor video is captured by Vito Paolo Pastore (IBM Research) with the microscope invented by Thomas Zimmerman (IBM Research)
Kriston Branson, Janelia Research Campus

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