Biomolecular condensates of galectin-3
This project is supported by the Polish National Science Center within the OPUS 20 program.
Research beackground and objectives
Galectins are proteins involved in many biological functions, including immune responses, cell migration and signaling. The multiple biological functions of galectins stem from their interactions with diverse proteins and lipids that contain galactose (monosaccharide sugar) bound covalently to their functional groups. In mammals, the galectin family consists of 15 members. Galectin-3 is unique within this protein family because of its peculiar molecular architecture. Galectin-3 has been reported to be involved in numerous intra- and extra- cellular processes, including endocytosis.
Endocytosis is a cellular process in which substances are brought into the cell. The material to be internalized is surrounded by a patch of the cell membrane, which then buds off inside the cell to form a vesicle containing the ingested material. The best-characterized endocytosis pathway is controlled by the protein called clathrin. Other, clathrin-independent endocytosis processes are less understood in general. In particular, the molecular mechanisms underlying the galectin-3-dependent endocytosis remain elusive. Very recently, however, galectin-3 has been demonstrated to undergo liquid-liquid phase separation (LLPS), which sheds new light on how this protein can perform its biological functions.
LLPS of biomolecules underlies the formation of membraneless organelles and other biomolecular condensates, which is currently a subject of intense research. LLPS has been recognized as an important organizing phenomenon in cells. Our hypothesis is that LLPS of galectin-3 at the cell membrane provides a driving force for membrane bending toward the cytosol and, thus, enables the galectin-3-dependent endocytosis. The objectives of our project are the following: (i) to explore the intra- and inter-molecular interactions that drive the LLPS of galectin-3, (ii) to give a detailed description of the molecular architecture of galectin-3 condensates in aqueous solutions and at membrane surfaces, and (iii) to explain the molecular mechanisms underlying the membrane bending and endocytic pit formation by the galectin-3 biomolecular condensates. We will use state-of-the-art molecular dynamics methods to reach the project objectives.
Results
Midhun Mohan Anila, Michał Wojciechowski, Mateusz Chwastyk, Bartosz Różycki. Theoretical Methods for Assessing the Density of Protein Nanodroplets. Int. J. Mol. Sci. 26: 8631 (2025). https://doi.org/10.3390/ijms26178631
Pamela Smardz, Midhun Mohan Anila, Paweł Rogowski, Mai Suan Li, Bartosz Różycki, Paweł Krupa. A practical guide to all-atom and coarse-grained molecular dynamics simulations using Amber and Gromacs: a case study of disulfide-bond impact on the intrinsically disordered amyloid beta. Int. J. Mol. Sci. 25: 6698 (2024). https://doi.org/10.3390/ijms25126698
Midhun Mohan Anila, Paweł Rogowski, Bartosz Różycki. Scrutinising the conformational ensemble of the intrinsically mixed-folded protein galectin-3. Molecules 29: 2768 (2024). https://doi.org/10.3390/molecules29122768
Fatemeh Kazemisabet, Arash Bahrami, Rikhia Ghosh, Bartosz Różycki, Amir H. Bahrami. Molecular mechanisms and energetics of lipid droplet formation and directional budding. Soft Matter 20: 909-922 (2024). https://doi.org/10.1039/D3SM01438J
Midhun Mohan Anila, Rikhia Ghosh, Bartosz Różycki. Membrane curvature sensing by model biomolecular condensates. Soft Matter 19: 3723-3732 (2023). https://depot.ceon.pl/handle/123456789/24188
Reinhard Lipowsky, Vahid Satarifard, Aparna Sreekumari, Miftakh Zamaletdinov, Bartosz Różycki, Markus Miettinen, Andrea Grafmüller. Leaflet tensions control the spatio-temporal remodeling of lipid bilayers and nanovesicles. Biomolecules 13: 926 (2023). https://doi.org/10.3390/biom13060926