Applied Systems Biology

MSc / PhD course at the Faculty of Information Technology and Bionics, Pázmány Péter Catholic University

4 credits 

Journal clubs on papers given by speakers: Tuesdays 14:15 - 16:00 (Hungarian local time)

Presentations by listed speakers: Thursdays 14:15 – 16:00 (Hungarian local time) 

Organised by Attila Csikász-Nagy and Andrea Ciliberto

Lectures from earlier years can be found under 2021 vol1,  2022 vol2, 2023 vol3, 2024 vol4 and 2025 vol5

Planned lectures of the semester:

Sep 10 - Attila Csikász-Nagy,  Pazmany - in person - room 314

Feed-forward loops of the cell cycle

Papers to read in preparation and discussed on 8 Sept: 1: Milo et al, 2: Novak et al.  in person - in room 314

Sep 17 - János Juhász,  Pazmany - in person - room 314

Computational modelling of biological communities

Papers to read in preparation and discussed on 15 Sept:  1: Vieira, 2: Gaizer, in person - in room 314

Sep 24 - Andrea Ciliberto,  Pazmany - in person - room 314

How to reduce genetic heterogeneity and kill resistantt cells?

Papers to read in preparation and discussed on 22 Sept: 1: Lipinski.et.al, 2: Schenk et al.  in person - in room 314

Oct 1 - Laurence Calzone, Institute Curie - online through Teams

A multiscale modelling approach of tumour growth

Papers to read in preparation and discussed on 29 Sept: 1: Calzone et al. , 2: Ruscone et al. - online through Teams

Oct 8 - Jorge Carneiro, Institute Gulbenkian - online through Teams

To be confirmed

Papers to read in preparation and discussed on 6 Oct: 1:  , 2:  - online through Teams

Oct 15 - Bence Szalai, Turbine AI -  in person - in room 314

To be confirmed

Papers to read in preparation and discussed on 13 Oct:   in person - in room 314

Oct 22 - Francesco Ferrari, IFOM - online through Teams

To be confirmed

Papers to read in preparation and discussed on 20 Oct: 1:  , 2:  - online through Teams

Nov 5 - Diego Di Bernardo, Tigem Naples - online through Teams

To be confirmed

Papers to read in preparation and discussed on 3 Nov: 1:  , 2:  - online through Teams

Nov 12 - Gábor Balázsi,  Stony Brook University  -  in person - in room 314

Synthetic biology of cancer

Papers to read in preparation and discussed on 10 Nov: 1: Wu et al. , 2: Wan et al  in person - in room 314

Nov 19 - Marco Cosentino Lagomarsino - online through Teams

Coarse-grained theories of cellular growth

Papers to read in preparation and discussed on 17 Nov: 1: Scott , 2: Droghetti  - online through Teams

Nov 26 - Orsolya Kapuy, Semmelweis  - in person - in room 314

A systems-level study of autophagy regulation

Papers to read in preparation and discussed on 24 Nov: 1:  Tyson and Novak, 2: Hajdú et al.  in person - in room 314 

Dec 1 - Concluding discussion  -  in person - in room 314