Journal Articles

(ii). ARTICLES (journals, volumes, dates, pagination)

1.  Mehta, A., Luz-Madrigal, A., Li, J. L., Tsonis, P. A., and Singh, A. * (2019). Comparative transcriptomic analysis and structure prediction of novel Newt proteins. PLoS One. 2019 Aug 16;14(8):e0220416. doi: 10.1371/journal.pone.0220416. eCollection 2019. [* Corresponding Author]

2. Singh, A.*, Gogia, N., Chang, C.Y., Sun, Y.H. (2019). Proximal fate marker homothorax marks the lateral extension of stalk-eyed fly Cyrtodopsis whitei. Genesis Jun 4:e23309. doi: 10.1002/dvg.23309. [* Corresponding Author]

3.  Cover Page: https://onlinelibrary.wiley.com/toc/1526968x/2019/57/9 

4. Mehta, A. and Singh, A. * (2019).  Insights into regeneration tool box: An animal approach. Developmental Biology pii: S0012-1606(19)30105-8. doi: 10.1016/j.ydbio.2019.04.006.           [* Corresponding Author]

5. Snigdha, K., Gangwani, K.S., Lapalikar, G.J., Singh, A. and Kango-Singh, M. (2019). Hippo signaling in Cancer: Lessons from Drosophila models. Frontiers in Cell and Developmental Biology (in press). Doi: 10.3389/fcell.2019.00085.

6. Deshpande, P., Gogia, N. and Singh, A.* (2018).  Exploring the efficacy of natural products in alleviating Alzheimer’s Disease using animal models. Neural Regeneration Research. (In press). [* Corresponding Author]

7.  Sarkar, A., Gogia, N., Glenn, N., # Singh, A., Jones, G., Powers, N., Srivastava, A., Kango-Singh, M., Singh, A.* (2018). A soy protein Lunasin can ameliorate amyloid-beta 42 mediated neurodegeneration in Drosophila eye. Sci. Reports 2018 Sep 10: 8(1):13545. doi:10.1038/s41598-018-31787-7. PMID: 30202077[* Corresponding Author] (#: undergraduate)

8.  Sarkar, A., Gogia, N., Farley, K., # Payton, L., # and Singh, A.* (2018). Characterization of a morphogenetic furrow specific Gal4 driver in the developing Drosophila eye PLoS One 13(4), e0196365. [* Corresponding Author] (#: Undergraduate)

9. Gogia, N., Sarkar, A. and Singh, A.* (2017). An undergraduate cell biology lab: Western Blotting to detect proteins from Drosophila eye. Drosophila Information Service 100, 218-225. [* Corresponding Author] 

10.   Mehta, A. and Singh, A.* (2017). Real time quantitative PCR to demonstrate gene expression in an undergraduate lab. Drosophila Information Service 100, 225-230. [* Corresponding Author] 

11.   Tare, M., Sarkar, A., Bedi, S., Kango-Singh, M., Singh, A.* (2016). Cullin-4 regulates Wg and JNK signaling-mediated cell death in the Drosophila eye. Cell Death Dis. 2016 Dec 29; 7(12):e2566. doi: 10.1038/cddis.2016.338.  [* Corresponding Author] 

12.    Singh, A. (2016). A remembrance of Dr. Panagiotis A Tsonis (1953–2016). Regeneration 3(4): 222-223.

13.   Payton, L.C., # Singh, A.* (2016). Drosophila eye model to investigate the role of mitochondria dysfunction as a trigger for neurodegeneration in Alzheimer’s disease. Proceedings 2016 Berry Summer Thesis Institute, 48-56 (https://issuu.com/udhonorsnews/docs/bsti_proceedings_16_online ) [* Corresponding Author], (# Undergraduate)

14.    Sarkar, A., Irwin, M.#, Riccetti, M.#, Singh, A., Singh, A.* (2016). Drosophila eye as a model for Alzheimer’ Disease: The silver Tsunami of 21st century. Neural Regeneration Research, May; 11(5):693-7. doi: 10.4103/1673-5374.182680. [* Corresponding Author] (# Undergraduate)

15.   Wittkorn, E., Sarkar, A., Garcia, K.#, Kango-Singh, M., Singh, A.* (2015). The Hippo pathway effector Yki downregulates Wg signaling to promote retinal differentiation in the Drosophila eye. Development. Jun 1;142 (11): 2002-13. doi: 10.1242/dev.117358. Epub 2015 May 14. [*Co- Corresponding Author] (# Undergraduate)

16.   Cutler, T., # Sarkar, A., Moran, M.M., # Puli, O.R., Tare, M., Gogia, N., Singh A.* (2015). Drosophila eye model to study neuroprotective role of CREB Binding Protein (CBP) in Alzheimer's Disease. PLoS ONE, PONE-D-15-18684R1. [* Corresponding Author] (# Undergraduate)

17.  Won, J.H., Tsogtbartarr, O., Son, W.-S., Singh, A.,# Choi, K., Cho, K. O. (2015). Cell type-specific responses to Wingless, Hedgehog and Decapentaplegic are essential for patterning early eye-antenna disc in Drosophila. PLoS ONE, 2015 May 8; 10(5):e0128169. doi: 10.1371/journal.pone.0128169. eCollection 2015. PubMed PMID: 25955574; PubMed Central PMCID: PMC4425660  (#: Co-author)

18.  Kwon, H.J.#, Waghmare, I., Verghese, S., Singh, A., Kango-Singh, M. (2015). Drosophila C-terminal Src Kinase regulates growth via the Hippo signaling pathway. Developmental Biology, 397 (1):67-76 (# Undergraduate) 

19.   Kiritooshi, N., Yorimitsu, T., Shirai, T., Puli, O.R., Singh, A., Nakagoshi, N. (2014). A vertex specific dorsal selector dve represses ventral appendage identity in Drosophila head. Mechanism of Development. Jun 24. pii: S0925-4773(14)00031-8. PMID: 24793093. (#: Co-author)

20.  Stalder, S.A., # Singh, A.* (2014). Role of Retinal Determination network in the formation of the adult Drosophila eye. Proceedings 2014 Berry Summer Thesis Institute, pp: 20-27. [* Corresponding Author], (# Undergraduate)

21.   Moran, M.T., # Tare, M., Kango-Singh, M. *, Singh, A. * (2013). Homeotic gene teashirt (tsh) has a neuroprotective function in amyloid-beta 42 mediated neurodegeneration. PLoS ONE, Nov 25; 8(11):e80829. doi: 10.1371 PMID 24282556  [* Co-Corresponding Author] (# Undergraduate)

22.   Steffensemeir, A., # Tare, M., Puli, O. R., Modi, R.M., # Nainaparampil, J., # Kango-Singh*, M., Singh A. * (2013).  Novel neuroprotective function of apical-basal polarity gene crumbs in amyloid beta 42 (Aβ42) mediated neurodegeneration. PLoS ONE Nov 18; 8(11):e78717. doi: 10.1371/journal.pone.0078717 PMID24260128 [* Co-Corresponding Author] (# Undergraduate) 

23.   Tare, M., Puli, O. R., Moran, M. T., # Kango-Singh, M.*, Singh A.* (2013). Domain specific genetic mosaic system in the Drosophila eye. Genesis. 2013 Jan; 51(1):68-74. doi: 10.1002/dvg.22355. Epub 2012 Nov 26. (PMID: 23109378)  (# Undergraduate). [* Co-Corresponding Author] 

24.  Irwin, M., # Singh, A.* (2013). The roles of Hippo signaling and JNK signaling in Alzheimer’s disease in Drosophila melanogaster. Proceedings 2013 Berry Summer Thesis Institute, pp: 15-25. (# Undergraduate)

25.   Cutler, T., # Singh, A.* (2013). Protein homeostasis via the ubiquitin proteasome system. Proceedings 2013 Berry Summer Thesis Institute, pp: 2-7. (# Undergraduate)

26.   Singh, A.  (2012). Neurodegeneration a means to an end. Journal of Cell Science and Therapy (Editorial). J. Cell Sci. Therapy 3:e107. Doi:10.4172/2157-7013.1000e107.  http://www.omicsonline.org/2157-7013/2157-7013-3-e107.php?aid=6170.

27. Call, G.B., Puli, O. R, James, A.M., Pope, C.R., Kango-Singh, M., Singh, A.* (2012). Annual Drosophila Research Conference, 2012 Developmental Dynamics. 241:1227-1236.  PMID: 22592979  [* Corresponding Author]

28. Singh, A.*, Irvine, K.D. (2012). Drosophila as a model for understanding development and disease. Developmental Dynamics. 241(1):1-2. (Editorial). PMID: 22174082   *Amit Singh is the guest editor for this special issue.

29. Singh, A.*, Tare, M., Puli, O.R., Kango-Singh, M*. (2012). A glimpse into Dorso-ventral patterning of the Drosophila eye. Developmental Dynamics. 241(1):69-84. (Review). PMID: 22034010 [*Corresponding Author]   *Amit Singh is the guest editor for this special issue.

30.   Puli, O.R., Singh, A. * (2011).  Protein trap lines of Drosophila to demonstrate spatio-temporal localization of proteins in an undergraduate lab. Drosophila Information Service (D.I.S) 94: 190-196. [*Corresponding Author]   

31.  Singh, A.*, Tare, M., Kango-Singh, M., Son, W.-S., Cho, K.-O. Choi, K.-W. * (2011). Opposing interactions between homothorax and Lobe defines the ventral eye margin of Drosophila eye. Developmental Biology. 15; 359(2): 199-208. PMID: 21920354 [* Corresponding Author]

32.  Tare, M.#, Modi, R. #,, Nainaparampil, J. #,, Puli, O. R., Bedi, S., Fernandez-Funez, P., Kango-Singh, M*., Singh, A.* (2011). Activation of JNK signaling mediates Amyloid-β-dependent cell death. PLoS ONE 6  (9) e24361, 1-12 PMID: 21949710 [* Corresponding Author]  #: All three are equal first authors, Rohan Modi and Jaison Nainaparampil  (Honors thesis students, 2008-2010)

33.  Call, G.B., Verghese, S., Puli, O. R, Hemmerle, D.M., Kango-Singh, M., Singh, A.* (2011). Annual Drosophila Research Conference, 2011 Developmental Dynamics. 240:2042-2050.  PMID: 21761487  [* Corresponding Author]

34.  Usman, M., Singh, A.* (2011). A New Undergraduate Curriculum in Mathematical Biology at the University of Dayton. Journal of STEM Education. 12(5 & 6): 9-17 July - Sept. 2011.  [* Corresponding Author] 

35.   Oros, S.M., #Tare, M., Kango-Singh, M., Singh, A.* (2010). Dorsal eye selector pannier (pnr) suppresses the eye fate to define dorsal margin of the Drosophila eye. Developmental Biology 2010 Oct 15; 346(2):258-71. Epub 2010 Aug 5. PMID: 20691679.  [* Corresponding Author]. Oros S.M., first author, Honors student (# Undergraduate)

36.  Call, G.B., Puli, O. R., Verghese, S., Singh, A.* (2010). Annual Drosophila Research Conference, D.C, 2010 Developmental Dynamics. 239 (11): 3124-9. PMID: 20865791.                                       [* Corresponding Author]

37.   Singh, A., Tsonis, P.A. (2010). Focus on molecule: Six 3. Experimental Eye Research 90: 535-536. PMID: 20117106.

38.   Kango-Singh, M., Singh, A.* (2009). Regulation of Organ Size: Insights from the Drosophila Hippo signaling pathway. Developmental Dynamics 238(7):1627-37.                                              [* Co- Corresponding Author]

39.   Singh, A., Kango-Singh, M., Gopinathan, K.P. (2009). Patterning defects in silkworm embryos analyzed through cuticle preparations. Sericologia 49 (1):113-117. [* Corresponding Author]

40.   Tare, M., Puli, O.R., Oros S.M., Singh, A.* (2009). Drosophila adult eye model to teach Scanning Electron Microscopy in an undergraduate cell biology laboratory. Drosophila Information Service (D.I.S) (92): 174-180.  [* Corresponding Author]

41.  Tare, M., Singh, A. * (2008). A cell Biology laboratory exercise to study subcellular organelles in Drosophila. Drosophila Information Service (D.I.S) (91): 160-164. [* Corresponding Author]

42.   Kango-Singh, M., Call, G. B., Singh, A.* (2008) Annual Drosophila Research Conference, 2008. Developmental Dynamics. 237(11):3444-52. [Corresponding Author]

43.   Lim, J., Lee, O.K., Hsu, Y.-C., Singh, A., Choi, K.-W. (2007). Drosophila TRAP230/240 are essential coactivators for Atonal in retinal neurogenesis. Dev. Biology  308(2): 322-330.

44.  Singh, A.*, Kango-Singh, M., Parthasarathy, R., Gopinathan, K.P.  (2007). Larval legs of mulberry silkworm Bombyx mori are prototypes for the adult legs. Genesis 45 (4): 169-176 [*Corresponding Author]

45.  Singh, A. (2006). Fly eye development in fly meeting at Houston. International Journal of Developmental Biology 50: 659-663      [* Corresponding author].

46.  Singh, A.*, Kango-Singh, M (2006).  Annual Drosophila meeting at Houston 2006. Dev. Dynamics. (Published Online: 26 Jul 2006) PMID: 16871634        [* Corresponding Author]

47.   Singh, A.*, Xiao, S., Choi, K.-W. (2006). Lobe and Serrate, are required for cell survival during early eye development in Drosophila. Development 133, 4771-4781  [* Co-Corresponding Author]

48.  Singh, A., Chan, J., Chern, J.J., Choi, K.-W. (2005). Genetic interaction of Lobe with its modifiers in dorsoventral patterning and growth of the Drosophila eye. Genetics. 171(1):169-83. Epub 2005 Jun 23. PMID: 15976174 

49.   Singh, A., Kango-Singh, M., Choi, K.-W., Sun, Y.H. (2004). Dorso-ventral asymmetric functions of teashirt in Drosophila eye development depend on spatial cues provided by early DV patterning genes. Mechanisms of Development 121: 365-370. PMID: 15110046

50.  Kango-Singh, M., Singh, A., Sun, Y.H.  (2003). Eyeless collaborates with Hedgehog and Decapentaplegic signaling in Drosophila eye induction. Developmental Biology 256 (1):49-60.  PMID: 12654291 

51.  Singh, A., Choi, K.-W. (2003). Initial state of Drosophila eye before dorso-ventral specification is equivalent to ventral. Development 130: 6351-6360. PMID: 14623824

52.  Singh, A., Kango-Singh, M., Sun, Y.H. (2002). Eye suppression, a novel function of teashirt, requires Wingless signaling. Development 129(18): 4271-80. PMID: 12183379

53.   Kango-Singh, M.#, Singh, A.,# Gopinathan, K.P. (2001). The wings of Bombyx mori develop from larval discs exhibiting an early differentiated state: a preliminary report.  Journal of Bioscience 26(2), 167-177.  PMID: 11426053   # Equal first author

54.   Singh, A., Gopinathan, K.P. (1998).  Confocal  microscopy, a powerful tool for biological research. Current Science 74(10):841- 851. (http://www.ias.ac.in/j_archive/currsci/74/10/841-851/viewpage.html)

55.   Singh, A., Gopinathan, K.P. (1997). Study of gene expression in whole mount silkworm embryos using heterologous Drosophila antibodies. Current Science 72 (2): 214-219. (http://www.ias.ac.in/j_archive/currsci/72/3/214-218/viewpage.html)

56.  Bhojwani, J., Singh, A., Misquitta, L., Mishra, A., Sinha, P. (1995). Search for Drosophila genes based on patterned expression of mini-white reporter gene in adult eyes. Roux's Archives of Developmental Biology, 205(3-4): 114-121. (http://www.springerlink.com/content/k4267w753752444m/)

57.  Singh, A.* (1995).  Enhancer Trap Technique: A Novel Tool for Identification and Developmental Characterization of Genes of Drosophila. Current Science 68: 517-525.  (http://www.ias.ac.in/j_archive/currsci/68/5/517-525/viewpage.html) [* Corresponding Author]

58.  Singh, A., Kango, M. (1995). An improved devitellinization technique with a high yield of X-gal stained embryos.    Drosophila Information Service (D.I.S.) 76:215.

59.   Singh A., Kango, M. and Sinha, P. (1995). An improved method for chemical devitellinization of X-gal stained Drosophila embryos. Indian Journal of Experimental Biology. 33, 150-152.  PMID: 7538973