S1. El-Sabrout AM, Moreno C, Temperville M, Ferreira EA, Ogereau D, Hassani IM, Bastide H, Abou-Youssef AY, Yassin A. Divergence and parallelism in two tropical drosophilids simultaneously invading a desert environment. BioRxiv.

S2. Francelle P, David JR, Yassin A. Divergent phenotypic plasticity of a convergent Mendelian trait in Drosophila. BioRxiv. 

58. Abdelbaki L, Saidi-Touati M, Serrano C, Yassin A, Boutellis A. New haplotypes of Zaprionus tuberculatus and Zaprionus indianus (Diptera: Drosophilidae) identified in fig orchards in Algeria. Oriental Insects (in press)

57. Prediger C, Ferreira EA, Zorzato SV, Hua-Van A, Klasson L, Miller W, Yassin A*, Madi-Ravazzi L*. Saltational episodes of reticulate evolution in the Drosophila saltans species group. Molecular Biology and Evolution 41:msae250. [* equal contribution]

56. Ferreira EA, Moore C, Ogereau D, Suwalski A, Prigent SR, Rogers RL, Yassin A. Genomic islands of divergence between Drosophila yakuba subspecies predominantly overlap with chromosomal inversions. Molecular Ecology (in press).

55. Georges R, Yassin A, Colinet H. First record of Zaprionus tuberculatus (Diptera: Drosophilidae) in mainland France. Entomological Research 54:e12725.

54. Bastide H, Legout H, Dogbo N, Prediger C, Ogereau D, Carcaud J, Filée J, Garnery L, Gilbert C, Requier F, Sandoz JC, Yassin A. The genome of the blind bee louse fly reveals deep convergences with its social host and illuminates Drosophila origins. Current Biology 34:1122-1132. 

53. Yassin A, Gidaszewski N, Debat V, David JR. Long-term evolution of quantitative traits in the Drosophila melanogaster species subgroup. Genetica 150:343-353.

52. Rice GR, David JR, Gompel N, Yassin A, Rebeiz M. Resolving between novelty and homology in the rapidly evolving phallus of Drosophila. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 340:182-196.

51. McQueen EW, Afkhami M, Atallah J, Belot J, Gompel N, Heifetz Y, Kamimura Y, Kornhauser SC, Masly JP, O’Grady P, Pelaez J, Rebeiz M, Rice G, Sanchez-Herrero E, Nunes MDS, Rampasso AS, Schnakenberg SL, Siegal ML, Takahashi A, Tanaka KM, Turetzek N, Zelinger E, Courtier-Orgogozo V*, Toda MJ*, Wolfner MF*, Yassin A*. A standardized nomenclature and atlas of the female terminalia of Drosophila melanogaster. Fly 16:128-151. (*co-last author)

50. Cavalcanti FAGS, Ribeiro LB, Marins G, Tonelli GSSS, Bao, Yassin A, Tidon R. Geographic expansion of an invasive fly: first record of Zaprionus tuberculatus (Diptera: Drosophilidae) in the Americas. Annals of the Entomological Society of America 115:267-274.

49. David JR, Ferreira EA, Jabaud L, Ogereau D, Bastide H, Yassin A. Evolution of assortative mating following selective introgression of pigmentation genes between two Drosophila species. Ecology and Evolution 12:e8821. 

48. Zorzato SV, Yassin A, Madi-Ravazzi L. Signature of climatic differentiation on mitochondrial DNA of Drosophila sturtevanti. Mitochondrial DNA Part A 32:5-8.

47. Madi-Ravazzi L, Segala LF, Roman BE, Alevi KCC, Prediger C, Yassin A, Hua-Van A, Miller W. Integrative taxonomy and a new species description in the sturtevanti subgroup of the Drosophila saltans group (Diptera: Drosophilidae). Zootaxa 4980:269-292.

46. Ferreira EA, Lambert S, Verrier T, Marion-Poll F, Yassin A. Soft selective sweep on chemosensory genes correlates with ancestral preference for toxic noni in a specialist Drosophila population. Genes 12:32. 

45. Hassani IM, Behrman EL, Gidaszweski N, Raveloson Ravaomanarivo L, Suwalski A, Debat V, David JR, Yassin A. First occurrence of the pest Drosophila suzukii (Diptera : Drosophilidae) in the Comoros Archipelago. African Entomology 28:78-83. 

44. Rice G, David JR, Kamimura Y, Masly JP, McGregor AP, Nagy O, Noselli S, Nunes MDS, O’Grady P, Sánchez-Herrero E, Siegal ML, Toda MJ*, Rebeiz M*, Courtier-Orgogozo V*, Yassin A*. A standardized nomenclature and atlas of the male terminalia of Drosophila melanogaster. Fly 13:51-64. (Cover figure; *co-last author)

43. Al Sayad S, Yassin A. Quantifying the extent of morphological homoplasy: a phylogenetic analysis of 490 characters in Drosophila. Evolution Letters 3:286-298.

42. Yassin A, Suwalski A, Raveloson Ravaomanarivo LH. Resolving the synonymy and polyphyly of the ‘Drosophila bakoue species complex’ (Diptera: Drosophilidae : ‘montium group’) with descriptions of two new species from Madagascar. European Journal of Taxonomy 532 :1-26. 

41. Willbrand B, Pfeiffer D, Leblanc L, Yassin A. First report of African fig fly, Zaprionus indianus Gupta (Diptera: Drosophilidae), on the island of Maui, Hawaii, USA, in 2017 and potential impacts to the Hawaiian entomofauna. Proceedings of the Hawaiian Entomological Society 50:55-65.

40. Nagy O, Nuez I, Savisaar R, Peluffo AE, Yassin A, Lang M, Stern DL, Matute D, David JR, Courtier-Orgogozo V. Correlated evolution of two copulatory organs via a single cis-regulatory nucleotide change. Current Biology 28:3450-3457.

39. Yassin A. Phylogenetic biogeography and classification of the Drosophila montium species group (Diptera: Drosophilidae). Annales de la Société entomologique de France 54:167-175. 

38. Yassin A. Drosophila yakuba mayottensis, a new model for the study of incipient ecological speciation. Fly 11:37-45. 

37. Bastide H, Lange JD, Lack JB, Yassin A, Pool JE. A variable genetic architecture of melanic evolution in Drosophila melanogaster. Genetics 204:1307-1319.

36. Yassin A*, Delaney EK*, Reddieux A, Bastide H, Appleton N, Seher T, Podlaja O, Lack JB, Barmina O, Allen S, David JR, Chenoweth S, Pool JE, Kopp A. The pdm3 locus is a hotspot for the recurrent evolution of female-limited color dimorphism in Drosophila. Current Biology 26 :2412-2422. (* co-first author)

35. Lack JB, Yassin A, Sprengelmeyer QD, Johanning EJ, David JR, Pool JE. Life history evolution and cellular mechanisms associated with increased size in high-altitude Drosophila. Ecology and Evolution 6:5893-5906.

34. Yassin A. Unresolved questions in genitalia coevolution: bridging taxonomy, speciation and developmental genetics. Organisms Diversity & Evolution 16 :681-688.

33. Yassin A, Debat V, Bastide H, Gidasweski N, David JR, Pool JE. Recurrent specialization on a toxic fruit in an island Drosophila population. Proceedings of the National Academy of Sciences of the USA 113:4771-4776.

32. Yassin A, Bastide H, Chung H, Veuille M, David JR, Pool JE. Ancient balancing selection at tan underlies female colour dimorphism in Drosophila erecta. Nature Communications 7:10400.

31. Gibert P, Hill M, Pascual M, Plantamp C, Terblanche JS, Yassin A, Sgrò CM. Drosophila as models to understand the adaptive process during invasion. Biological Invasions 18:1089-1103.

30. Yassin A, David JR. Within-species reproductive costs affect the asymmetry of satyrization in Drosophila. Journal of Evolutionary Biology 29:455-460. 

29. Bastide H*, Yassin A*, Johanning EJ, Pool JE. Pigmentation in Drosophila melanogaster reaches its maximum in Ethiopia and correlates most strongly with ultra-violet radiation in sub-Saharan Africa. BMC Evolutionary Biology 14:179. (*co-first author)

28. David JR, Yassin A, Gidasweski N, Debat V. Drosophilids (Diptera) from Mayotte island: an annotated list of species collected in 2013 and comments on the colonisation of Indian Ocean Islands. Annales de la Société Entomologique de France 50:336-342. 

27. Yassin A, Orgogozo V. Coevolution of male and female genitalia in the Drosophila melanogaster species subgroup. PLoS ONE 8:e57158.

26. Yassin A. Phylogenetic classification of the family Drosophilidae Rondani (Diptera): the role of morphology in the post-genomic era. Systematic Entomology 38:349-364.

25. Bouiges A, Yassin A, Ikogou M, Lelarge C, Sikoa A-R, Mona S, Veuille M. Detecting recent changes in the demographic parameters of drosophilid populations from Western and Central Africa. Comptes Rendus Geoscience 345:297-305. 

24. Yassin A, Gidaszewski N, Albert B, Hivert J, David JR, Orgogozo V, Debat V. The Drosophilidae (Diptera) of the Scattered Islands, with the description of a novel association with Leptadenia madagascariensis Decne (Apocynaceae). Fly 6:298-302. 

23. Yassin A, Carareto CMA, Noll F, Bicudo HEMC, David JR. Realized evolvability: quantifying phenotypic evolution in a Drosophila clade. Journal of Zoological Systematics and Evolutionary Research 49:32-43.

22. David JR, Yassin A, Rasamizafi LA, Raveloson LH, Debat V. Scratching for food: an original feeding behavior in African flower breeding Drosophila. Fly 5:285-290.

21. David JR, Yassin A, Moreteau JC, Legout H, Moreteau B. Thermal phenotypic plasticity of body size in Drosophila melanogaster: sexual dimorphism and genetic correlations. Journal of Genetics 90:295-302. 

20. Yassin A, Markow TA, Narechania A, O’Grady PM, DeSalle R. The genus Drosophila as a model for testing tree- and character-based methods of species identification using DNA barcoding. Molecular Phylogenetics and Evolution 57:509-517.

19. Yassin A, Da Lage JL, David JR, Kondo M, Madi-Ravazzi L, Prigent S, Toda MJ. Polyphyly of the Zaprionus genus group (Diptera: Drosophilidae). Molecular Phylogenetics and Evolution 55:335-339.

18. Yassin A, Lienau EK, Narechania A, DeSalle R. Catching the phylogenic history through the ontogenic hourglass: phylogenomic analysis of Drosophila body segmentation genes. Evolution & Development 12:288-295.

17. Yassin A, David JR. Revision of the Afrotropical species of Zaprionus (Diptera, Drosophilidae), with descriptions of two new species and notes on the internal reproductive structures and immature stages. Zookeys 51:33-72.

16. van der Linde K, Yassin A. A fly by any other name. New Scientist 206:24-25.

15. Yassin A, Amabis JM, Da Lage JL, Debiais-Thibaud M, David JR. On the relationship between Zaprionus spinipilus Chassagnard & McEvey and Z. vittiger Coquillett, the type species of the genus Zaprionus (Diptera: Drosophilidae). Annales de la Société Entomologique de France 46:471-476. 

14. Yassin A, Amédégnato C, Cruaud C, Veuille M. Molecular taxonomy and species delimitation in Andean Schistocerca (Orthoptera: Acrididae). Molecular Phylogenetics and Evolution 53: 404-411.

13. Yassin A, David JR, Bitner-Mathé BC. Phenotypic variability of natural populations of an invasive drosophilid, Zaprionus indianus, on different continents: analysis of wild-living and laboratory-grown flies. Comptes Rendus Biologies 332: 898-908.

12. Yassin A. Phylogenetic relationships between species subgroups in the Drosophila saltans group (Diptera: Drosophilidae): can morphology solve a molecular conflict? Zoological Research 30: 225-232.

11. Yassin A, Borai F, Capy P, David JR, Elias E, Riad SA, Shalaby HG, Serour S, Abou-Youssef A. Mitochondrial DNA and chromosomal variation of the invasive drosophilid Zaprionus indianus in Egypt. Mitochondrial DNA 20: 34-40. 

10. Yassin A, Araripe LO, Capy P, Da Lage JL, Klaczko LB, Maisonhaute C, Ogereau D, David JR. Grafting the molecular phylogenetic tree with morphological branches to reconstruct the evolutionary history of the genus Zaprionus (Diptera: Drosophilidae). Molecular Phylogenetics and Evolution 47: 903-915.

9. Araripe LO, Yassin A, Klaczko LB, Moreteau B, David JR. Divergent abdominal bristle patterns in two distantly related drosophilids: antero-posterior variations and sexual dimorphism in a modular trait. Genetica 134: 211-222.

8. Yassin A. Molecular and morphometrical revision of the Zaprionus tuberculatus species subgroup (Diptera: Drosophilidae), with descriptions of two cryptic species. Annals of the Entomological Society of America 101: 978-988.

7. Yassin A, Capy P, Madi-Ravazzi L, Ogereau D, David JR. DNA barcode discovers two cryptic species and two geographical radiations in the invasive drosophilid Zaprionus indianus. Molecular Ecology Resources 8: 491-501. 

6. David JR, Lemeunier F, Tsacas L, Yassin A. The historical discovery of the nine species in the Drosophila melanogaster species subgroup. Genetics 177: 1969-1973.

5. Yassin A, Abou-Youssef AY, Bitner-Mathé BC, Capy P, David JR. Developmental stress in wild-living drosophilids inferred from biometry: metric and meristic traits react differently to heterogeneous environmental conditions. Ecological Entomology 32: 698-706.

4. Yassin A, Abou-Youssef AY, Bitner-Mathé BC, Capy P, David JR. Mesosternal bristle number in a cosmopolitan drosophilid: an X-linked variable trait independent of sternopleural bristles. Journal of Genetics 86: 149-158. 

3. David JR, Araripe LO, Bitner-Mathé BC, Capy P, Goňi B, Klaczko LB, Legout H, Martins MB, Vouidibio J, Yassin A, Moreteau B. Quantitative trait analysis and geographic variability of natural populations of Zaprionus indianus, a recent invader in Brazil. Heredity 96: 53-62.

2. David JR, Araripe LO, Bitner-Mathé BC, Capy P, Goňi B, Klaczko LB, Legout H, Martins MB, Vouidibio J, Yassin A, Moreteau B. Sexual dimorphism of body size and sternopleural bristle number: a comparison of geographical populations of an invasive cosmopolitan drosophilid. Genetica 128: 109-122. 

1. Yassin AE, Riad SA, Abdel-Aziz A, Abou-Youssef AY. Evolutionary genetics of Zaprionus. I. Molecular and quantitative genetic analyses of a newly invasive drosophilid, Zaprionus indianus, in Egypt. Egyptian Journal of Genetics and Cytology 34: 169-187. 

B3. Yassin A (2021) Systematics in the (post)genomic era: a look at the Drosophila model. In: Grandcolas P, Maurel M.-C. (eds.), Systematics and the Exploration of Life. ISTE, London, UK.

B2. Yassin A, David JR (2010) Phylogenetic biogeography of Afrotropical Drosophilidae. In: Gailis M, Kalniòð S (eds.), Biogeography. Nova Science Publishers, New York, USA.

B1. Yassin A (2006) Raṣṣu al-tatabuʿāti [Sequence alignment]. In: A. El-Metainy (ed.), al-Ginūmiks wa al-Maʿlūmātiyya al-Hayāwiyya [Genomics and Bioinformatics]. Munshaʾat al-Maʿārif, Alexandria, Egypt. (in Arabic)