PUBLICATIONS
For a full list of my publications, see GoogleScholar
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PRE-PRINTS
PRE-PRINTS
li_etal_2026_biorxiv.pdfMultiscale learning and topological analysis across complex postures enable robust nematode size quantification in pharmacological assays
Multiscale learning and topological analysis across complex postures enable robust nematode size quantification in pharmacological assays
Li Z, Shaver AO, Sauria MEG, Weinstein J, Mastronardo MK, Jhaveri NS, Stone K, Choo R, Lilley C, Sharma E, Shrishrimal R, Benson G, Shi A, Soko C, and Andersen EC
(2026 July 17) bioRxiv [DOI]
moya_etal_2026_biorxiv.pdfCaenorhabditis briggsae ancestral genomic hyper-diversity contrasts with globally distributed genome-wide haplotypes
Caenorhabditis briggsae ancestral genomic hyper-diversity contrasts with globally distributed genome-wide haplotypes
Moya ND, Wang B, Tanny RE, Sauria MEG, O’Connor LM, Khorshidian A, McKeown R, Gosse C, Dilks CM, Crombie TA, Zhang G, Rais E, Frézal L, Dang VD, Haryoso E, Devi MP, Gimond C, Cook DE, Hsu JC, Shaver AO, Zdraljevic S, Richaud A, Wen T, Mehraj A, Sharanya H, Arulprakasam KR, Koury EJ, Roberto NM, Schaye ES, Singh V, Tarno H, Ailion M, Paaby AB, Zhao Z, Cutter AD, Wang J, Rockman MV, Félix MA, Braendle C, Andersen EC
(2025 December 14) bioRxiv [DOI]
PEER-REVIEWED
PEER-REVIEWED
polk_etal_2026_G3.pdfNatural variation in C. elegans 1-Octanol olfactory avoidance behavior
Natural variation in C. elegans 1-Octanol olfactory avoidance behavior
Polk EA, Tanny RE, Shaver AO, Andersen EC, Gokcumen O, and Ferkey DM
(2026 July 09) G3 Genes|Genomes|Genetics [DOI]
shaver_etal_2026_PLoSPathogens.pdfEvaluating beta-tubulin variants as predictors of benzimidazole resistance across Caenorhabditis nematodes
Evaluating beta-tubulin variants as predictors of benzimidazole resistance across Caenorhabditis nematodes
Shaver AO*, McKeown R*, Reyes Otero JM, Collins JB, Hogan DW, Fraser JS, Dreyer S, Ragsdale EJ, and Andersen EC
(2026 June 05) PLOS Pathogens [DOI]
(* = equal contributions)
Crombie_etal_2025_ToxilogicalSciences.pdfNatural variation suggests candidate genes underlying Caenorhabditis elegans susceptibility to diverse toxicants
Natural variation suggests candidate genes underlying Caenorhabditis elegans susceptibility to diverse toxicants
Crombie TA, McKeown R, Widmayer SJ, Shaver AO, Moya ND, Collins JB, Wit J, Tanny RE, Braendle C, Stevens L, van Sluijs L, Rockman MV, Sterken MG, Felix MA, Andersen EC
(2026 February 18) Toxicological Sciences [DOI]
garcia_etal_2025_jbt.pdfA Taguchi Design of Experiments Approach for Untargeted Metabolomics Sample Preparation Optimization
A Taguchi Design of Experiments Approach for Untargeted Metabolomics Sample Preparation Optimization
Garcia BM, Gouveia GJ, Shaver AO, Borges RM, Amster IJ, Edison AS, and Leach III FE
(2025 November 04) Journal of Biomolecular Techniques [DOI]
Collins_etal_2025_PoultryScience.pdfA small-scale survey of fenbendazole resistance in Ascaridia galli and Heterakis gallinarum, two common ascarid parasites of poultry
A small-scale survey of fenbendazole resistance in Ascaridia galli and Heterakis gallinarum, two common ascarid parasites of poultry
Collins JB, Choo R, Shaver AO, Schaye ES, Volpe T, Nunn L, Lighty ME, Niel KR, Frye EM, Zamanian M, and Andersen EC
(2025 September 10) Poultry Science [DOI]
shaver_andersen_2025_TiPs.pdfIntegrating metabolomics into the diagnosis and investigation of anthelmintic resistance
Integrating metabolomics into the diagnosis and investigation of anthelmintic resistance
Shaver AO and Andersen EC
(2024 December) Trends in Parasitology [DOI]
Collins_etal_2024_micropub.pdfLack of correlation between parasite burden and key weight metrics in poultry infected with intestinal ascarids
Lack of correlation between parasite burden and key weight metrics in poultry infected with intestinal ascarids
Collins JB, Shaver AO, Schaye ESS, Volpe T, Nunn LR, Zamanian M, and Andersen EC
(2024 August 7) microPublication Biology [DOI]
shaver_etal_2024_PLoSPathogens.pdfQuantifying the fitness effects of resistance alleles with and without anthelmintic selection pressure using Caenorhabditis elegans
Quantifying the fitness effects of resistance alleles with and without anthelmintic selection pressure using Caenorhabditis elegans
Shaver AO, Miller IR, Schaye ES, Moya ND, Collins JB, Wit J, Blanco AH, Shao FM, Andersen EJ, Khan SA, Paredes G, and Andersen EC
(2024 May 20) PLOS Pathogens [DOI]
shaver_etal_2023_PLoSPathogens.pdfVariation in anthelmintic responses are driven by genetic differences among diverse C. elegans wild strains
Variation in anthelmintic responses are driven by genetic differences among diverse C. elegans wild strains
Shaver AO, Wit J, Dilks CM, Crombie TA, Li H, Aroian RV, and Andersen EC
(2023 April 03) PLOS Pathogens [DOI]
asef_2023_AnalyticalChemistry.pdfUnknown metabolite identification using machine learning collision cross-section prediction and tandem mass spectrometry
Unknown metabolite identification using machine learning collision cross-section prediction and tandem mass spectrometry
Asef CK, Rainey MA, Garcia BM, Gouveia GJ, Shaver AO, Leach III FE, Morse AM, Edison AS, McIntyre LM, and Fernández FM
(2023 January 03) Analytical Chemistry [DOI]
shaver_etal_2022_FrontMolBiosci.pdfAn anchored experimental design and meta-analysis approach to address batch effects in large-scale metabolomics
An anchored experimental design and meta-analysis approach to address batch effects in large-scale metabolomics
Shaver AO*, Garcia BM*, Gouveia GJ, Morse AM, Liu Z, Asef CK, Borges RM, Leach FE III, Andersen EC, Amster IJ, Fernández FM, Edison AS, and McIntyre LM (2022 November 08) Frontiers in Molecular Biosciences [DOI]
gouveia_etal_2021_AnalyticalChemistry.pdfLong-term metabolomics reference material
Long-term metabolomics reference material
Gouveia GJ, Shaver AO, Garcia BM, Morse AM, Andersen EC, Edison AS, and McIntyre LM
(2021 June 22) Analytical Chemistry [DOI]
shaver_etal_2021_JoVE.pdfCulture and assay of large-scale mixed-stage Caenorhabditis elegans populations
Culture and assay of large-scale mixed-stage Caenorhabditis elegans populations
Shaver AO, Gouveia GJ, Kirby PS, Andersen EC, and Edison AS
(2021 May 05) Journal of Visualized Experiments [DOI]
snyder-mackler_etal_2016_Science.pdfSocial status alters immune regulation and response to infection in macaques
Social status alters immune regulation and response to infection in macaques
Snyder-Mackler N, Sanz-Remón J, Kohn JN, Brinkworth JF, Morrow S, Shaver AO, Grenier JC, Pique-Regi R, Johnson ZP, Wilson ME, Barreiro LB, and Tung J
(2016 November 25) Science [DOI]
snyder-mackler_etal_2016_Genetics.pdfEfficient genome-wide sequencing and low-coverage pedigree analysis from noninvasively collected samples
Efficient genome-wide sequencing and low-coverage pedigree analysis from noninvasively collected samples
Snyder-Mackler N, Majoros WH, Yuan ML, Shaver AO, Gordon JB, Kopp GH, Schlebusch SA, Wall JD, Alberts SC, Mukherjee S, Zhou X, and Tung J
(2016 June 01) Genetics [DOI]
Hamm_etal_2014_MolecularEcology.pdfWolbachia do not live by reproductive manipulation alone: infection polymorphism in Drosophila suzukii and D. subpulchrella
Wolbachia do not live by reproductive manipulation alone: infection polymorphism in Drosophila suzukii and D. subpulchrella
Hamm CA, Begun DJ, Vo A, Smith CCR, Saelao P, Shaver AO, Jaenike J, and Turelli M
(2014 August 25) Molecular Ecology [DOI]
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