Software and Code

I write code in Matlab and (more recently) R to prototype, validate, motivate, and test my mathematical ideas. Some code is available in my github repository which also includes links to projects with previous collaborators. More details about select codes can be found below.

Information Theory (written in R)

• This code estimates the pairwise mutual information between all pairs of observations of continuous random variables in a dataset and outputs the results in a symmetric array. Options for estimating differential entropy of each observed variable are also implemented. The entropy and mutual information estimators rely on k-nearest neighbors algorithms. Technical details are available in Kraskov et al (2003).

2D Molecular Dynamics (written in MATLAB)