Publications

ORCID (0000-0001-8775-5251), ResearcherID (G-3294-2012), Scopus (23466600500), Google Scholar

Most recent first, for citations statistics see the links above.

The E-prints provided below may be downloaded for personal use only. Any other use requires prior permission of the authors and the publisher. 

1. A. Córdoba, D. Becerra, and J. D. Schieber, “Stable upstream swimming of a swarmcroswimmers,” Physics of Fluids, vol. 37, no. 6, 2025.

2. A. Córdoba, D. Becerra, and J. D. Schieber, “Reëntanglement dynamics in polymer melts can be explained by fast dangling end retraction without resorting to nonuniversality,” ACS Macro Letters, vol. 14, pp. 385–390, 2025.

3. A. Córdoba, J. M. Montes de Oca, S. B. Darling, and J. J. de Pablo, “Influence of the dielectric constant on the ionic current rectification of bipolar nanopores,” ACS nano, vol. 18, no. 19, pp. 12569–12579, 2024.

4. S. M. Arzideh, A. Córdoba, J. G. Ethier, J. D. Schieber, and D. C. Venerus, “Equibiaxial elongation of entangled polyisobutylene melts: Experiments and theoretical predictions,” Journal of Rheology, vol. 68, no. 3, pp. 341–353, 2024. Featured.

5. A. Córdoba and J. D. Schieber, “The effects of hydrodynamic interactions on the swimming velocity and stability of a swarm of microswimmers,” Physics of Fluids, vol. 35, no. 11, p. 111901, 2023. Featured. E-print. SI.

6. A. R. Motezakker, A. Córdoba, T. Rosén, F. Lundell, and L. D. Söderberg, “Effect of stiffness on the dynamics of entangled nanofiber networks at low concentrations,”  Macromolecules, vol. 56, no. 23, pp. 9595–9603, 2023.

7. D. Becerra, A. Córdoba, J. H. Walther, and H. A. Zambrano, “Water flow in a polymeric nanoslit channel with graphene and hexagonal boron nitride wall coatings: An atomistic study,” Physics of Fluids, vol. 35, no. 10, p. 102009, 2023.

8. J. G. Ethier, A. Córdoba, and J. D. Schieber, “pyDSM: GPU-accelerated rheology predictions for entangled polymers in python,” Computer Physics Communications, vol. 290, p. 108786, 2023.

9. A. Córdoba, J. M. M. M. de Oca, J. Dhanasekaran, S. Darling, and J. J. de Pablo, “Current rectification by nanoparticles in bipolar nanopores,” Mol. Syst. Des. Eng., vol. 8, pp. 289–299, 2023.

10. J. M. Montes de Oca, J. Dhanasekaran, A. Córdoba, S. B. Darling, and J. J. de Pablo, “Ionic transport in electrostatic Janus membranes. an explicit solvent molecular dynamic simulation,” ACS Nano, vol. 16, no. 3, pp. 3768–3775, 2022.

11. A. E. Rojano, A. Córdoba, J. H. Walther, and H. A. Zambrano, “Effect of charge inversion on nanoconfined flow of multivalent ionic solutions,” Phys. Chem. Chem. Phys., vol. 24, pp. 4935–4943, 2022.

12. A. Córdoba and J. D. Schieber, “MUnCH: a calculator for propagating statistical and other sources of error in passive microrheology,” Rheologica Acta, vol. 61, pp. 49–57, 2022. E-print. Download code here.

13.  J. D. Schieber and A. Córdoba, “Nonequilibrium thermodynamics for soft matter made easy(er),” Physics of Fluids, vol. 33, no. 8, p. 083103, 2021. Featured. E-print.

14. D. Becerra, A. Córdoba, and J. D. Schieber, “Examination of nonuniversalities in entangled polymer melts during the start-up of steady shear flow,” Macromolecules,  vol. 54, pp. 8033–8042, 2021. Featured on cover.

15. D. Becerra, A. Córdoba, M. Katzarova, M. Andreev, D. Venerus, and J. Schieber, “Polymer rheology predictions from first principles using the slip-link model,” Journal of Rheology, vol. 64, no. 5, pp. 1035–1043, 2020. E-print. SI.

16. A. Córdoba, J. D. Schieber, and T. Indei, “A simple micro-swimmer model inspired by the general equation for nonequilibrium reversible-irreversible coupling,” The Journal of Chemical Physics, vol. 152, no. 19,  p. 194902, 2020. E-print. SI.

17. J. Lequieu, A. Córdoba, J. Moller, and J. J. de Pablo, “1CPN: A coarse-grained multi-scale model of chromatin,” The Journal of Chemical Physics, vol. 150, no. 21, p. 215102, 2019.

18. A. Córdoba, “The effects of the interplay between motor and brownian forces on the rheology of active gels,” The Journal of Physical Chemistry B, vol. 122, no. 15, pp. 4267–4277, 2018. ArXiv link. Download code here. 

19. A. Córdoba, D. M. Hinckley, J. Lequieu, and J. J. de Pablo, “A molecular view of the dynamics of dsDNA packing inside viral capsids in the presence of ions,” Biophysical Journal, vol. 112, no. 7, pp. 1302–1315, 2017.

20.  J. Lequieu, A. Córdoba, D. Hinckley, and J. J. de Pablo, “Mechanical response of DNA–nanoparticle crystals to controlled deformation,” ACS Central Science, vol. 2, no. 9, pp. 614–620, 2016.

21. J. Lequieu, A. Córdoba, D. C. Schwartz, and J. J. de Pablo, “Tension-dependent free energies of nucleosome unwrapping,” ACS Central Science, vol. 2, no. 9, pp. 660–666, 2016.

22. A. Córdoba, T. Stieger, M. G. Mazza, M. Schoen, and J. J. de Pablo, “Anisotropy and probe-medium interactions in the microrheology of nematic fluids,” Journal of Rheology, vol. 60, no. 1, pp. 75–95, 2016. E-print.

23. A. Córdoba, J. D. Schieber, and T. Indei, “The role of filament length, finite-extensibility and motor force dispersity in stress relaxation and buckling mechanisms in non-sarcomeric active gels,” Soft Matter, vol. 11, no. 1, pp. 38–57, 2015. Featured on cover.

24.  A. Córdoba Uribe, “The role of molecular motors in the mechanics of active gels and the effects of inertia, hydrodynamic interaction and compressibility in passive microrheology ”(Doctoral dissertation, Illinois Institute of Technology), ProQuest Dissertations and Theses (ISBN: 9781321552959), 2014.

25. H. Feng, A. Córdoba, F. Hernandez, T. Indei, S. Li, X. Li, and J. Schieber, “A boundary integral method for computing forces on particles in unsteady Stokes and linear viscoelastic fluids,” International Journal for Numerical Methods in Fluids, vol. 82, no. 4, pp. 198–217, 2016.

26. M. Katzarova, L. Yang, M. Andreev, A. Córdoba, and J. D. Schieber, “Analytic slip-link expressions for universal dynamic modulus predictions of linear monodisperse polymer melts,” Rheologica Acta, vol. 54, no. 3, pp. 169–183, 2015.

27. A. Córdoba, J. Schieber, and T. Indei, “A single-chain model for active gels I: Active dumbbell model,” RSC Advances, vol. 4, no. 34, pp. 17935–17949, 2014. Download code here.

28. A. Córdoba, T. Indei, and J. D. Schieber, “The effects of compressibility, hydrodynamic interaction and inertia on two-point, passive microrheology of viscoelastic materials,” Soft Matter, vol. 9, no. 13, pp. 3521–3534, 2013.

29. J. D. Schieber, A. Córdoba, and T. Indei, “The analytic solution of Stokes for time-dependent creeping flow around a sphere: Application to linear viscoelasticity as an ingredient for the generalized Stokes–Einstein relation and microrheology analysis,” Journal of Non-Newtonian Fluid Mechanics, vol. 200, pp. 3–8, 2013.

30. A. Córdoba, J. D. Schieber, and T. Indei, “The effects of hydrodynamic interaction and inertia in determining the high-frequency dynamic modulus of a viscoelastic fluid with two-point passive microrheology,” Physics of Fluids, vol. 24, no. 7, p. 073103, 2012. E-print.

31. A. Córdoba, T. Indei, and J. D. Schieber, “Elimination of inertia from a generalized Langevin equation: Applications to microbead rheology modeling and data analysis,” Journal of Rheology, vol. 56, no. 1, pp. 185–212, 2012. E-print. Download code here and here or on github.

32. T. Indei, J. D. Schieber, and A. Córdoba, “Competing effects of particle and medium inertia on particle diffusion in viscoelastic materials, and their ramifications for passive microrheology,” Physical Review E, vol. 85, no. 4, p. 041504, 2012.

33. T. Indei, J. D. Schieber, A. Córdoba, and E. Pilyugina, “Treating inertia in passive microbead rheology,” Physical Review E, vol. 85, no. 2, p. 021504, 2012.

34. D. M. Carrero, J. M. Morales, A. C. Garcia, N. Florez, P. A. Delgado, J. Dussan, A. Córdoba Uribe, and A. F. González Barrios, “Comparative analysis for three different immobilisation strategies in the hexavalent chromium biosorption process using bacillus Sphaericus S-layer,” The Canadian Journal of Chemical Engineering, vol. 89, no. 5, pp. 1281–1287, 2011.

35. A. Córdoba, “Quantitative fit of a model for proving of bread dough and determination of dough properties,” Journal of Food Engineering, vol. 96, no. 3, pp. 440–448, 2010.

36. J. C. Naranjo, A. Córdoba, L. Giraldo, V. S. García, and J. C. Moreno-Piraján, “Lipase supported on granular activated carbon and activated carbon cloth as a catalyst in the synthesis of biodiesel fuel,” Journal of Molecular Catalysis B: Enzymatic, vol. 66, no. 1, pp. 166–171, 2010.

37. A. Córdoba Uribe and J. A. Medina Perilla, “Optimización de formulaciones de PVC flexible: Sistema plastificante DOP-ESBO,” Revista Iberoamericana de Polímeros, vol. 9, p. 3, 2009.

38. A. Córdoba, N. Cuéllar, M. González, and J. Medina, “The plasticizing effect of alginate on the thermoplastic starch/glycerin blends,” Carbohydrate Polymers, vol. 73, no. 3, pp. 409–416, 2008.

39. A. Córdoba, P. Vargas, and J. Dussan, “Chromate reduction by Arthrobacter Cr47 in biofilm packed bed reactors,” Journal of Hazardous Materials, vol. 151, no. 1, pp. 274–279, 2008.

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