Research
Interests and Publications
Interests and Publications
Dissertations:
Abeer Eshra, "Computing Machine Implementation using DNA", PhD thesis, Menoufia University in collaboration with Duke University, Supervisors: Prof. Nawal El-Fishawy, Prof. John H. Reif, Prof. Ayman El-Sayed, 2019.
Abeer Eshra, "Developing DNA self-assembled computers", MSc thesis, Menoufia University, Supervisors: Prof. Nawal El-Fishawy, Prof. Waiel F. Abdel Wahed, Prof. Ayman El-Sayed, 2013.
Book Chapters:
Sudhanshu Garg, Hieu Bui, Abeer Eshra, Shalin Shah and John H Reif, "Nucleic Acid Hairpins: A Robust and Powerful Motif for Molecular Devices", Soft Nanomaterials, vol. 19, p. 175, (Edited by Ye Zhang), World Scientific, 2019.
Journal Publications:
Tristan Stérin*, Abeer Eshra*, Damien Woods, (* equal contribution), "Thermodynamically Favoured Molecular Computing", In preparation, An early version titled "Algorithmic DNA origami: Scaffolded DNA computation in one and two dimensions" appeared in The 28th International Conference on DNA Computing and Molecular Programming (DNA28) Track B.
Ebtsam Hamdy, Nadia Eshra, Abeer Eshra, Nawal El-Fishawy, "Gis And Remote Sensing In Estimation Of The Agriculture Lands Infringement, Case Study: Kom Hamada, Behiera", International Journal of Agriculture and Environmental Research 9 (2), 192-213 2023.
Tristan Stérin*, Abeer Eshra*, Damien Woods, (* equal contribution), "Algorithmic DNA origami: Scaffolded DNA computation in one and two dimensions", 28th International Conference on DNA Computing and Molecular Programming (DNA28), 2022
Tianqi Song, Shalin Shah, Hieu Bui, Sudhanshu Garg, Abeer Eshra, Daniel Fu, Ming Yang, Reem Mokhtar, and John Reif, "Programming DNA-Based Biomolecular Reaction Networks on Cancer Cell Membranes," Journal of the American Chemical Society, 2019.
Tianqi Song, Abeer Eshra, Shalin Shah, Hieu Bui, Daniel Fu, Ming Yang, R. Mokhtar, and John Reif, "Fast and compact DNA logic circuits based on single-stranded gates using strand-displacing polymerase," Nature nanotechnology, vol. 14, no. 11, pp. 1075-1081, 2019.
Abeer Eshra, Shalin Shah, Tianqi Song and John Reif, "Renewable DNA Hairpin-Based Logic Circuits". IEEE Transactions on Nanotechnology 02/2019; PP(99):1-1., DOI:10.1109/TNANO.2019.2896189
Tianqi Song, Nikhil Gopalkrishnan, Abeer Eshra, Sudhanshu Garg, Reem Mokhtar, Hieu Bui, Harish Chandran and John Reif, "Improving the Performance of DNA Strand Displacement Circuits by Shadow Cancellation", ACS Nano, 10/2018, 12(11)., DOI:10.1021/acsnano.8b07394
Xin Song, Abeer Eshra, Chris Dwyer and John Reif, "Renewable DNA seesaw logic circuits enabled by photoregulation of toehold-mediated strand displacement". RSC Advances, 05/2017, 7(45):28130-28144., DOI:10.1039/C7RA02607B
Abeer Eshra and Ayman El-Sayed, "An Odd Parity Checker Prototype Using DNAzyme Finite State Machine", IEEE/ACM Transactions on Computational Biology and Bioinformatics, 03/2014, 11(2):316-324., DOI:10.1109/TCBB.2013.2295803
Abstracts and Posters:
Abeer Eshra and John Reif: "A Reversible DNA Seesaw Motif with Hairpins", Foundations of Nanoscience Meeting (FNANO 2017), 04/2017, Snowbird, Utah.