Abdus Samad - Publications

Journal Publications

First & Co-First Author:

1. Samad A, Meghla NS, Nain Z, Karpiński TM, Rahman MS. Immune epitopes identification and designing of a multi-epitope vaccine against bovine leukemia virus: a dynamics and immune simulation approaches. 2022. Cancer Immunology, Immunotherapy. doi: https://doi.org/10.1007/s00262-022-03181-w

2. Samad A, Huq MA, Rahman MS. Bioinformatics approaches identified dasatinib and bortezomib inhibit the activity of MCM7 protein as a potential treatment against human cancer. Scientific Reports. 2022. doi: 10.1038/s41598-022-05621-0. PMID: 35087187.

3. Pokhrel S, Bouback TA, Samad A, Nur SM,..... Karpiński TM, Ahammad F, Qadri I, Rahman MS. Spike protein recognizer receptor ACE2 targeted identification of potential natural antiviral drug candidates against SARS-CoV-2. International Journal of Biological Macromolecules. 2021 Nov 30;191:1114-1125. doi: 10.1016/j.ijbiomac.2021.09.146. PMID: 34592225.

4. Samad A, Haque F, Nain Z, Alam R, Al Noman MA, Rahman Molla MH, Hossen MS, Islam MR, Khan MI, Ahammad F. Computational assessment of MCM2 transcriptional expression and identification of the prognostic biomarker for human breast cancer. Heliyon. 2020 Oct 1;6(10):e05087. doi: 10.1016/j.heliyon.2020.e05087. PMID: 33024849.

5. Samad A, Jafar T, Rafi JH. Identification of angiotensin-converting enzyme 2 (ACE2) protein as the potential biomarker in SARS-CoV-2 infection-related lung cancer using computational analyses. Genomics. 2020 Nov;112(6):4912-4923. doi: 10.1016/j.ygeno.2020.09.002. PMID: 32916258.

6. Samad A, Ahammad F, Nain Z, Alam R, Imon Raihan Rahman, Hasan Mahedi, Rahman MS. Designing a multi-epitope vaccine against SARS-CoV-2: an immunoinformatics approach. Journal of Biomolecular Structure and Dynamics. 2020 Jul;40(1):14-30. doi: 10.1080/07391102.2020.1792347. PMID: 32677533.

7. Karim MA, Samad A, Adhikari UK, Kader MA, Kabir MM, Islam MA, Hasan MN. A Multi-Omics Analysis of Bone Morphogenetic Protein 5 (BMP5) mRNA Expression and Clinical Prognostic Outcomes in Different Cancers Using Bioinformatics Approaches. Biomedicines. 2020 Jan 21;8(2):19. doi: 10.3390/biomedicines8020019. PMID: 31973134.

Corresponding Author:

1. Alam, R., Biswas, S., Haque, F., Pathan, M.T., Imon, R.R., Talukder, M.E.K., Samad, A., Asseri, A.H. and Ahammad, F., 2022. A systematic analysis of ATPase Cation transporting 13A2 (ATP13A2) transcriptional expression and prognostic value in human brain cancer. Biomedical Signal Processing and Control, 71, p.103183. doi: 10.1016/j.bspc.2021.103183

2. Tabassum A, Samdani MN, Dhali TC, Alam R, Ahammad F, Samad A, Karpiński TM. Transporter associated with antigen processing 1 (TAP1) expression and prognostic analysis in breast, lung, liver, and ovarian cancer. Journal of Molecular Medicine. 2021 Sep;99(9):1293-1309. doi: 10.1007/s00109-021-02088-w. PMID: 34047812.

3. Ahammad F, Alam R, Mahmud R, Akhter S, Talukder EK, Tonmoy AM, Fahim S, Al-Ghamdi K, Samad A, Qadri I. Pharmacoinformatics and molecular dynamics simulation-based phytochemical screening of neem plant (Azadiractha indica) against human cancer by targeting MCM7 protein. Briefings in Bioinformatics. 2021 Sep 2;22(5):bbab098. doi: 10.1093/bib/bbab098. PMID: 33834183.

4. Mou MA, Keya NA, Islam M, Hossain MJ, Al Habib MS, Alam R, Rana S, Samad A, Ahammad F. Validation of CSN1S1 transcriptional expression, promoter methylation, and prognostic power in breast cancer using independent datasets. Biochemistry and Biophysics Reports. 2020 Dec 2;24:100867. doi: 10.1016/j.bbrep.2020.100867. PMID: 33381666.

5. Rafi JH, Jafar T, Pathan MT, Reza R, Islam S, Sourna IJ, Alam R, Samad A, Ahammad F. High expression of bone morphogenetic protein 1 (BMP1) is associated with a poor survival rate in human gastric cancer, a dataset approaches. Genomics. 2021 Jan;113(1 Pt 2):1141-1154. doi: 10.1016/j.ygeno.2020.11.012. PMID: 33189777.

6. Rahman, F., Mahmood, T.B., Amin, A., Alam, R., Jharna, J.F., Samad, A. and Ahammad, F., 2020. A multi-omics approach to reveal the key evidence of GDF10 as a novel therapeutic biomarker for breast cancer. Informatics in Medicine Unlocked, 21, p.100463. doi: 10.1016/j.imu.2020.100463.

7. Bhuiyan, M.A., Quayum, S.T., Ahammad, F., Alam, R., Samad, A. and Nain, Z., 2020. Discovery of potential immune epitopes and peptide vaccine design-a prophylactic strategy against Rift Valley fever virus. F1000Research. doi: 10.12688/f1000research.24975.1.

Co-Author:

1. Islam MA, Zilani MNH, Biswas P, Khan DA, Rahman MH, Nahid R, Nahar N, Samad A, Ahammad F, Hasan MN. Evaluation of in vitro and in silico anti-inflammatory potential of some selected medicinal plants of Bangladesh against cyclooxygenase-II enzyme. Journal of Ethnopharmacology. 2022 Mar 1;285:114900. doi: 10.1016/j.jep.2021.114900. PMID: 34896569.

2. Bouback TA, Pokhrel S, Albeshri A, Aljohani AM, Samad A, Alam R, Hossen MS, Al-Ghamdi K, Talukder MEK, Ahammad F, Qadri I, Simal-Gandara J. Pharmacophore-Based Virtual Screening, Quantum Mechanics Calculations, and Molecular Dynamics Simulation Approaches Identified Potential Natural Antiviral Drug Candidates against MERS-CoV S1-NTD. Molecules. 2021 Aug 17;26(16):4961. doi: 10.3390/molecules26164961. PMID: 34443556.

3. Nain Z, Barman SK, Sheam MM, Syed SB, Samad A, Quinn JMW, Karim MM, Himel MK, Roy RK, Moni MA, Biswas SK. Transcriptomic studies revealed pathophysiological impact of COVID-19 to predominant health conditions. Briefings in Bioinformatics. 2021 Nov 5;22(6):bbab197. doi: 10.1093/bib/bbab197. PMID: 34076249.

4. Islam MS, Sana S, Haque ME, Rahman SMM, Samad A, Al Noman A, Alam R, Rana S, Meem RI, Mondol D, Islam MS, Islam MT, Mazumder K. Methanol, ethyl acetate and n-hexane extracts of Tragia involucrata L. leaves exhibit anxiolytic, sedative and analgesic activity in Swiss albino mice. Heliyon. 2021 Jan 2;7(1):e05814. doi: 10.1016/j.heliyon.2020.e05814. PMID: 33426350.

5. Barman, U.D., Saha, S.K., Kader, M.A., Jamal, M.A.H.M., Sharma, S.P., Samad, A. and Rahman, M.S., 2020. Clinicopathological and prognostic significance of GPC3 in human breast cancer and its 3D structure prediction. Network Modeling Analysis in Health Informatics and Bioinformatics, 9(1), pp.1-18. doi: 10.1007/s13721-020-00234-x

6. Saha, S.K., Kader, M.A., Samad, A., Biswas, K.C., Rahman, M.A., Parvez, M.A.K. and Rahman, M.S., 2020. Prognostic and clinico-pathological significance of BIN1 in breast cancer. Informatics in Medicine Unlocked, 19, p.100327. doi: 10.1016/j.imu.2020.100327.

Submitted Manuscripts:

1. Samad A, Pathan MT, Nain Z, Alam R, Karim MA, Alam MA, Imon RR, Ahammad F*. Homologs of Chromodomain-containing Chromobox Family Proteins Are Potential Biomarker for Human Gastric Cancer- A Comprehensive Multi-Omics Study for Novel Biomarker Identification. [Revision Submitted; PLOS ONE]

2. Samad A, Huq MA, Rahman, MS. Transcriptional Expression, Prognostic, and Immunological Roles of MCM7 in Human Bladder, Breast, and Lung Cancers: A Multi-omics Analysis. [Under-Review; Cancers]

3. Alam R, Samad A, Suza MN, Rahman MM, Imon RR, Nain Z, Ahammad F. Contriving next generation multiepitope vaccine as an excellent prophylactic candidate against crimean-congo hemorrhagic fever. [Under-Review; RSC Advances].

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