SOHYEON JEON
M.S. in Cognitive Science @Seoul National University
Portfolio Keywords : Computer-assisted annotation using Semi-supervised Learning Algorithm,
Mask R-CNN Architecture, Deep Learning, Computer Vision, Image Processing, Neuroscience
Embedded Files
A Web-based Mouse Lemur Brain Explorer & 3D Digital Brain Atlas
A Web-based Mouse Lemur Brain Explorer & 3D Digital Brain Atlas
Non-human Primate Brain Research and Technical Development from annotation to 3D Reconstruction
Detailed Pipeline
1. ROI Selection & Modification
1. ROI Selection & Modification
Input : Mouse Lemur 2D coronal images
Output : Manually modified ROIs
2. Build Ontology
2. Build Ontology
Input : Brain structure data
Output : Ontology file & data
3. Convert ROIs for Tagging
3. Convert ROIs for Tagging
Input : Manually modified ROIs
Output : Tag-able ROIs
4. Intermittent Tagging
4. Intermittent Tagging
Input : Tag-able ROIs
Output : Manually tagged ROIs
5. Interpolation
5. Interpolation
Input : Manually tagged ROIs
Output : Interpolated ROIs
6. Training
6. Training
Input : Interpolated ROIs
Output : Fully tagged ROIs
7. Tagging Modification
7. Tagging Modification
Input : Interpolated ROIs
Output : Modified ROIs with full tagging
8. Construct Reference Template
8. Construct Reference Template
Input : Blockface images
Output : Reconstructed 3D volumetric blockface image
9. Register to Reference Blockface Template
9. Register to Reference Blockface Template
Input : Blockface images
Output : Reconstructed 3D blockface image
10. 3D Reconstruction
10. 3D Reconstruction
Input : Reconstructed 3D blockface image
Output : Smoothed 3D model
Page updated
Google Sites
Report abuse