Please visit the official site:
Please visit the official site:
CTF Determination and Correction
Package for CTF determination and correction in electron cryotomography
Tilt-series Alignment and Tomographic Reconstruction with Motion Correction and 3D-CTF Correction
Package to deal with beam-induced sample motion and 3D-CTF in cryoET
Tomographic Reconstruction
Package for removing contamination-induced reconstruction artefacts in cryo electron tomograms from FIB-milled samples
Package for fast tomographic reconstruction on standard multicore computers
Denoising
Package for feature-preserving noise filtering in electron tomography
Package for fast denoising of tomographic volumes based on Anisotropic Non-linear Diffusion (AND)
Segmentation
Package for robust membrane segmentation based on Tensor Voting
Scipion plugin
Plugins for Scipion: Tomo3D and TomoSegMemTV
Image enhancement
Package for image enhancement and sharpening in FIB-SEM Tomography.
Image interpolation
Package for generating isotropic FIB-SEM stacks by Optical Flow.
Denoising
Package for structure-preserving noise reduction in FIB-SEM stacks.
B-factor estimation and correction
Package for sharpening high resolution information in single particle electron cryomicroscopy
People interested in the following packages should request them by email.
Tomographic Reconstruction
TOMO3DGPU - tomo3dgpu.pdf
Package for matrix tomographic reconstruction on GPUs
TOMO3Dhybrid - tomo3dhybrid.pdf
Package for fast tomographic reconstruction with CPU+GPU co-processing
Denoising
TOMOAND 1.0 - tomoand_1.0.pdf
Package for noise reduction in electron cryotomography with anisotropic nonlinear diffusion
Segmentation
TOMOSEGMEM - tomosegmem.pdf
Package for segmentation of membranes in tomograms
CTF Determination in single particle cryoEM
EMCTF - emctf.pdf
Package for CTF determination of non-astigmatic images in electron cryomicroscopy