Publications

Dr. Buchan's Google Scholar: https://scholar.google.com/citations?user=g52YFJEAAAAJ&hl=en 

1. Walton, J. and A. Buchan (2024). Evidence for novel polycyclic aromatic hydrocarbon degradation pathways in culturable marine isolates. Microbiology Spectrum doi.org/10.1128/spectrum.03409

2. Mayers, K.M., C. Kuhlisch, J. T. R. Basso, M. R. Saltvedt, A. Buchan and R-A. Sandaa (2023) Grazing on marine viruses and its biogeochemical implications. mBio. 10.1128/mbio.01921-21

3. Armes, A. C., J. L., Walton. A. Buchan (2022) Quorum sensing and antimicrobial production orchestrates biofilm dynamics in multispecies bacterial communities. Microbiology Spectrum e0261522. doi: 10.1128/spectrum.02615-22

4. Basso, J. T. R., K. A. Jones, K. R. Jacobs, C. J. Christopher, H. B. Fielland, S. R. Campagna and A. Buchan (2022) Substrate and prophage induction collectively influence metabolite profiles in a marine bacterium. MSystems e00585-22.

5. Fremin, B.J., A. S. Bhatt, N.C. Kyrpides and Global Phage Small Open Reading Frame (GP-SmORF) Consortium (2022) Thousands of small, novel genes predicted in global phage genomes. Cell Reports 39(12)110984.

6. Holt, B. H., A. Buchan, J. M. DeBruyn, H. Goodrich-Blair, E. McPherson and V. A. Brown (2022) Breaking barriers with bread: using sourdough starter microbiome to teach high-throughput sequencing techniques. Journal of Microbiology & Biology Education. e00306-21

7. Daly, G., V. Ghini, A. Adessi, M. Fondi, A Buchan and C. Viti (2022) Towards a mechanistic understanding of microalgae-bacteria interactions: integration of metabolomic analysis and computional models. FEMS Microbiology Reviews. https://doi.org/10.1093/femsre/fuac020

8. Elbon, C. E., G. R. LeCleir, M. J. Tuttle, S. K. Jurgensen, T.G. Demas, C. J. Keller, T. Stewart and A. Buchan (2022) Microbiomes and Planctomycete diversity in large-scale aquaria habitats. PLoS One. E0267881

9. Tuttle, M. J., F. S. May, J. T. R. Basso, E. R. Gann, J. Xu and A. Buchan (2022) Plasmid-mediated stabilization of prophages. mSphere. 7:2:603 https://doi.org/10.1128/msphere.00930-21

10. Correa, A.M.S., Howard-Varona, C., Coy, S.R., Buchan, A., Sullivan, M.S., Weitz, J.S. (2021) Revisiting the rules of life for viruses of microorganisms. Nature Reviews Microbiology. 19:501-513. doi.org/10.1038/s41579-021-00530-x

11. Armes, A. C., and Buchan, A. (2021) Cyclic di-GMP is integrated into a hierarchal quorum sensing network regulating antimicrobial production and biofilm formation in Roseobacter clade member Rhodobacterales strain Y4I. Frontiers in Marine Science, 8. doi: 10.3389/fmars.2021.681551

12. Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., . . . Figueroa, I. (2021) A genomic catalog of Earth’s microbiomes. Nature Biotechnology, 39(4), 499-509.doi: 10.1038/s41587-020-0718-6

13. Kieft, K., Zhou, Z., Anderson, R. E., Buchan, A., Campbell, B. J., Hallam, S. J., Hess, M., Sullivan, M.B., Walsh, D. A., Roux, S. and Anantharaman, K. (2021) Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages. Nature Communications 12:3503. doi: 10.1101/2020.08.24.253096

14. Correa, A.M.S., Howard-Varona, C., Coy, S.R., Buchan, A., Sullivan, M.S., Weitz, J.S. (2021) Revisiting the rules of life for viruses of microorganisms. Nature Reviews Microbiology. 19:501-513. doi.org/10.1038/s41579-021-00530-x

15. Tuttle, M. & Buchan, A (2020) Lysogeny in the oceans: Lessons from cultivated model systems and reanalysis of its prevalence. Environmental Microbiology. 22(12):4919-4933. doi.org/10.1111/1462-2920.15233

16. Basso, J. T. R., Ankrah, N. Y. D., Tuttle, M. J., Grossman, A. S., Sandaa, R. -A., & Buchan, A. (2020) Genetically similar temperate phages form coalitions with their shared host that lead to niche-specific fitness effects. ISME Journal, 14(7), 1688-1700. doi: 10.1038/s41396-020-0637-z

17. Quigley, L.N.M, Edwards, A., Steen A.D. and Buchan, A.. (2019) Characterization of the interactive effects of labile and recalcitrant organic matter on microbial growth and metabolism. Frontiers in Microbiology-Aquatic Sciences. doi: 10.3389/fmicb.2019.00493

18. Frank, A.M., Chua, M.J., Gulvik, C.A and  Buchan, A.. (2018) Functional Redundancy in the Hydroxycinnamate Catabolic Pathways of the Salt Marsh Bacterium Sagittula stellata E-37. Applied and Environmental Microbiology. 84:e02027-18. doi.org/10.1128/AEM.02027-18

19. Moran, M.A., Kujawinksi, E. B., Stubbins, A., Fatland, R., Aluwihare, L. I., Buchan, A., Crump, B. C., Dorrestein, P. C., Dhyrman, S. T., Hess, N. J., Howe, B. , Longnecker, K., Medeiros, P. M., Niggemann, J., Obernosterer, I., Repeta, D. J., Waldbauer, J. R.. (2016) Deciphering Ocean Carbon in a Changing World. Proceedings of the National Academy of Sciences. 113(12);3143-3151

20. Steen, A. D., Quigley, L. M. and Buchan, A. (2016) Evidence for the priming effect in a planktonic estuarine microbial community. Frontiers in Marine Science doi 10.3389/fmars.2016.00006

21. Wigington, C., Sonderegger, D., Brussaard, C., Buchan, A., Coleman, M., Fuhrman, J., Lennon, J., Middelboe, M., Suttle, C. Stock, C., Wilson, W., Wommack, K. E., Wilhelm, S. W. and Weitz, J. S. (2016) Re-examination of the “10:1 ratio” of virus-like particles to microbes in the global oceans. Nature Microbiology doi:10.1038/nmicrobiol.2015.24

22. Zhan, Y., Buchan, A., and Chen, F. (2015) Novel N4 bacteriophages prevail in the cold biosphere. Applied and Environmental Microbiology. 81:5196-5202

23. Weitz, J.S., C. A. Stock, S.W. Wilhelm, L. Bourouiba, M. L. Coleman, A. Buchan, M. J. Follows, J. A. Fuhrman, L.F. Jover, J.T. Lennon, M. Middelboe, D. L. Sonderegger, C.A. Suttle, B. P. Taylor, T. Frede Thingstad, W. H. Wilson, and K. E. Wommack (2015) A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes. International Society for Microbiology Ecology Journal 9:1352-1364

24. Xiuzhen, H., S. Jennings, B. Bruce, A. Buchan, L. Cai, P. Chen, C. Congdon, C. Cramer, W. Guan, U. Hilgert, H. Jiang, Z. Li, G. McClure, D. McMullen, B. Nanduri, J. Peckham, A. Perkins, B. Rekepalli, S. Salem, J. Specker, K. Walker. D. Wunsch, D. Xiong, S. Zhang, Y. Zhang, Z. Zhao and J. H. Moore. (2015) Big Data – a 21 st Century Science Maginot Line? No-Boundary Thinking: Shifting from the Big Data Paradigm. BioData Mining 8:7 doi:10.1186/s13040-015-0037-5

25. Cude, W. N., C. W. Prevatte, M. K. Hadden, A. L. May, R. T. Smith, C. L. Swain, S. R. Campagna, A. Buchan. (2015) Phaeobacter sp. strain Y4I utilizes two separate cell-to-cell communication systems to regulate the production of the antimicrobial indigoidine. Applied and Environmental Microbiology 81:1417-1425

26. Ankrah, N. Y. D., C. Budinoff, M. K. Hadden, and A. Buchan. (2014) Draft genome sequence of Sulfitobacter sp. CB2047, a member of the Roseobacter clade of marine bacteria. Genome Announcements. 2:e01125-14

27. Buchan, A., G. R. LeCleir, C. A. Gulvik and J. M. Gonzalez. (2014) Master recyclers: the biogeochemical contributions and physiological attributes of bacteria associated with marine phytoplankton blooms. Nature Reviews Microbiology. 12:686-698.

28. Jover, L. F., T. C. Effler, A. Buchan, S. W. Wilhelm, J. S. Weitz. (2014) The elemental composition of virus particles: implications for marine biogeochemical cycles. Nature Reviews Microbiology. 12:519-528.

29. Ankrah, N. Y. D., C. R. Budinoff, W. H. Wilson, S. W. Wilhelm and A. Buchan. (2014) Genome sequence of two temperate phage, pCB2047-A and pCB2047-C, infecting Sulfitobacter sp. strain 2047. Genome Announcements. 2:e00108-14

30. Ankrah, N. Y. D., A. L. May, J. L., Middleton, D. R. Jones, M. Hadden, J. R. Gooding, G. R. LeCleir, S. W. Wilhelm, S. R. Campagna and A. Buchan. (2014) Metabolic response of a marine bacterium to phage infection provides insights into bacterial physiology and ocean biogeochemistry. International Society for Microbiology Ecology Journal. 8:1089-1100

31. Ankrah, N. Y.D. , C.R. Budinoff, W. H. Wilson, S. W. Wilhelm, A Buchan (2014) Genome sequence of the Sulfitobacter sp. 2047 infecting lytic phage pCB2047-B Genome Announcements. 2:e00945-13

32. Huang, X, B. Bruce, A. Buchan, C.B. Congdon, C. L. Cramer, S. F. Jennings, H. Jiang, Z. Li, G. McClure, R. McMullen, J. H. Moore, B. Nanduri, J. Peckham, A. Perkins, S. W. Polson, B. Rekepalli, S. Salem, J. Specker, D. Wunsch, D. Xiong, S. Zhang and Z. Zhao. (2013) No-Boundary Thinking in Bioinformatics Research. BioData Mining. 6:19

33. Cude WN and A Buchan (2013) Acyl homoserine lactone-based quorum sensing in the Roseobacter clade: complex cell-to-cell communication controls multiple physiologies. Frontiers in Aquatic Microbiology 4:336. doi: 10.3389/fmicb.2013.00336

34. Gulvik, C. A. and A. Buchan (2013) Simultaneous catabolism of plant-derived aromatic compounds results in enhanced growth for members of the Roseobacter lineage. Applied and Environmental Microbiology 79:3716-3723

35. Gulvik, C. A., T. C. Effler, S. W. Wilhelm and A. Buchan (2012) De-MetaST-BLAST: A tool for the validation of degenerate primer sets and data mining of publicly available metagenomes. PLoS ONE 7(11): e50362. doi:10.1371/journal.pone.0050362

36. Cude, W. N., J. Mooney, A. A. Tavanaei*, M. K. Hadden, A. Frank, C. A. Gulvik, A. L. May and A. Buchan (2012) The production of the secondary metabolite indigoidine contributes to competitive surface colonization in the marine roseobacter Phaeobacter sp. strain Y4I. Applied and Environmental Microbiology. 78:4771-4780

37. Magalhães, C., R. P. Kiene, A. Buchan, A. Machado, C. Teixeria, W. J. Wiebe, and A. A. Bordalo. (2012) A novel inhibitory interaction between dimethylsulfoniopropionate (DMSP) and the denitrification pathway. Biogeochemistry. 107:393-408

38. Budinoff, C. R., M. K. Hadden, J. R. Dunlap, A. Buchan. (2011) Marivita roseacus sp. nov., of the family Rhodobacteraceae, isolated from a temperate estuary and an emended description of the genus Marivita. Journal of General and Applied Microbiology. 57:259-267.

39. Budinoff, C.R., S. Loar, G. R. LeCleir, S. W. Wilhelm and A. Buchan. (2011) Comparison of membrane filters for enumeration of marine viruses by epifluorescence microscopy. BMC Microbiology 11:168

40. Magalhães C., R. P. Kiene, A. Buchan, A. Machado, W. J. Wiebe and A. A. Bordalo. (2011) Methanethiol accumulation exacerbates release of N 2 O during denitrification in estuarine sediments and bacterial cultures. Environmental Microbiology Reports 3:308-314

41. Yao, D., A. Buchan and M. T. Suzuki (2011) In situ activity of NAC11-7 roseobacters in coastal waters based on ftsZ expression. Environmental Microbiology 13:1032-1041.

42. Fernández-Guerra, A., A. Buchan, X. Mou, E. O. Casamayor, and J. M. González. (2010) T-RFPred: a nucleotide sequence size prediction tool for microbial community description based on terminal-restriction fragment length polymorphism chromatograms. BMC Microbiology 10:262

43. Matteson, A. R., C. R. Budinoff, C.E. Campbell, A. Buchan and S.W. Wilhelm. (2010) Estimating virus production rates in aquatic systems. Journal of Visualized Experiments. 43:e2196.

44. Buchan, A., B. Crombie, and G. M. Alexandre. (2010) Temporal dynamics and genetic diversity of chemotactic-competent microbial populations in the rhizosphere. Environmental Microbiology 12:3171-3184.

45. Fu, Y., D. M. MacLeod, R. B. Rivkin, F. Chen, A. Buchan, and A. S. Lang. (2010) High diversity of Rhodobacterales in the subartic North Atlantic Ocean and gene transfer protein expression in isolated strains. Aquatic Microbial Ecology 59:283-293.

46. Buchan, A., M. K. Hadden, M. T. Suzuki. (2009) Development and application of quantitative PCR tools for subgroups of the Roseobacter clade. Applied and Environmental Microbiology 75:7542-7547.

47. Slightom, R. N., and A. Buchan. (2009) Surface colonization by marine roseobacters: integrating genotype and phenotype (MiniReview) Applied and Environmental Microbiology 75:6027-6037

48. Zhao, Y., K. Wang, C. Budinoff, A. Buchan, A. Lang, N. Jiao, and F. Chen. 2009. Gene transfer agent (GTA) genes reveal diverse and dynamic Roseobacter and Rhodobacter populations in Chesapeake Bay. The International Society for Microbial Ecology Journal. 3: 364-373.

49. Moran, M. A., R. Belas, M. A. Schell, J. M. Gonzaléz, F. Sun, B. J. Binder, J. Edmonds, W. Ye, B. Orcutt, E. C. Howard, C. Meile, W. Palefsky, A. Goesmann, Q. Ren, I. Paulsen, L. E. Ulrich, L. S. Thompson, E. Saunders and A. Buchan. (2007) Ecological genomics of marine roseobacters. Applied and Environmental Microbiology 73:4559-4569.

50. LeCleir, G. R., A. Buchan, J. Maurer, M.A. Moran, and J. T. Hollibaugh. (2007) Comparison of chitinolytic enzymes from an alkaline, hypersaline lake and an estuary. Environmental Microbiology 9:197-205.

51. Howard, E. C., J. R. Henrikson, A. Buchan, C. R. Reisch, H. Bürgmann, R. Welsh, W. Ye, J. M. Gonzalez, K. Mace, S. B. Joye, R. P. Kiene, W. B. Whitman, and M. A. Moran. (2006) Bacterial taxa limiting sulfur flux from the ocean. Science 314:649-652.

52. Buchan, A., J. M. Gonzáléz, and M. A. Moran. (2005) An Overview of the Marine Roseobacter Lineage (MiniReview) Applied and Environmental Microbiology 71:5665-5677.

53. Buchan, A. and L. N. Ornston. (2005) When coupled to natural transformation, PCR-mutagenesis is made less random by mismatch repair. Applied and Environmental Microbiology 71:7610-7612.

54. Poretsky, R. S., N. Bano, A. Buchan, G. LeCleir, J. Kleikemper, M. Pickering, M.A. Moran, and J. T. Hollibaugh. (2005) Analysis of microbial gene transcripts in environmental samples. Applied and Environmental Microbiology 71:4121-4126.

55. Moran, M A., A. Buchan, J. M. Gonzáléz, J. F. Heidelberg, J. Henriksen, W. B. Whitman, R. P. Kiene, J. A. Eisen, G. King, M. R. Belas, C. Fuqua, E. Rahe, W. Sheldon, W. Ye, J. Carlton, L. Brinkac, M. Lewis, S. Johri, B. Weaver, D. Rasko, I. Paulsen, Q. Ren, and N. Ward. (2004) Genome Sequence from an Ecologically Significant Marine Bacterial Taxon. Nature 432:910-913.

56. LeCleir, G. R., A. Buchan, and J. T. Hollibaugh. (2004) Chitinase gene sequences retrieved from diverse aquatic habitats reveal environment-specific distributions. Applied and Environmental Microbiology 70:6977-6983.

57. Buchan, A., E. L. Neidle, and M. A. Moran. (2004) Organization of the -ketoadipate pathway in members of the marine Roseobacter lineage. Applied and Environmental Microbiology 70: 1658-1668.

58. Buchan, A., S. Y. Newell, M. Butler, E. J. Biers, J. T. Hollibaugh and M. A. Moran. (2003) Dynamics of bacterial and fungal communities on decaying salt marsh grass. Applied and Environmental Microbiology 69:6676-6687.

59. J. M. Gonzalez, J. S. Covert, W. B. Whitman, J. R. Henriksen, F. Mayer, B. Scharf, R. Schmitt, A. Buchan, J. A. Fuhrman, R. P. Kiene and M. A. Moran. (2003) Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. Nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments. International Journal of Systematic Bacteriology 53:1261-1269.

60. Moreta, J. I. L., S. Y. Newell, A. Buchan, and M. A. Moran. (2003) Diversity of ascomycete laccase gene sequences in a southeastern U.S. saltmarsh. Microbial Ecology 45:270-281.

61. Buchan, A., S. Y. Newell , J. I. Moreta, and M. A. Moran. (2002) Analysis of internal transcribed spacer (ITS) regions of rRNA genes in fungal communities in a southeastern US salt marsh . Microbial Ecology 43: 329-340.

62. Buchan, A., E. L. Neidle and M. A. Moran. (2001) Diversity of the ring-cleaving dioxygenase gene pcaH in a salt marsh bacterial community. Applied and Environmental Microbiology 67:5801-5809.

63. Buchan, A., M. Alber, and R. E. Hodson. (2001) Strain specific differentiation of environmental Escherichia coli isolates via denaturing gradient gel electrophoresis (DGGE) analysis of the 16S-23S intergenic spacer region. FEMS Microbial Ecology 35: 313-321.

64. Buchan, A., L. Collier, E. Neidle, and M. A. Moran. (2000) Key aromatic-ring-cleaving enzyme, protocatechuate 3,4-dioxygenase, in the ecologically important marine Roseobacter lineage. Applied and Environmental Microbiology 66:4662-4672