Vfold2D : Predicting RNA 2D structure from sequence (1M NaCl)

VfoldMCPX : Predicting 2D structures of RNA duplex and multi-strand RNA complexes (1M NaCl)

Vfold Pipeline : Predicting RNA 3D structure from 2D structure/sequence (1M NaCl)

IsRNA : 3D structure prediction using coarse-grained molecular dynamics simulation

RLDOCK : A physics-based model for RNA-ligand docking

SPRank : A hybrid machine-learning and knowledge-based scoring function for RNA-ligand docking and binding affinity prediction

uCRISPR : A folding thermodynamics-based prediction for CRISPR/Cas9 cleavage efficiency

SHAPER : Predicting chemical probing reactivity profile from RNA 3D structure

MgNet : Identifying metal ion binding sites on RNA using 3D convolutional neural network.