Thermal Adaptive Laboratory Evolution (TALE) is a method used to help microbial cells adapt to high-temperature environments through gradual, lab-based evolution. Instead of altering genes directly, scientists grow cells under increasingly warm temperatures over many generations. Each round of growth selects for cells that are better at surviving and reproducing in heat. Over time, these evolutionary pressures lead to a genetically adapted, heat-tolerant strain. This technique is valuable in synthetic biology, where many engineered enzymes work best at higher temperatures than their host cells normally tolerate.
Chosen Genes and their working temperature
One of the key enzymes in our synthetic carbon fixation pathway—the POAP cycle—is PFOR (pyruvate:ferredoxin oxidoreductase), which operates best around 40-44°C. However, the JCVI Syn3.0b minimal cell typically grows at 37°C and does not naturally tolerate higher temperatures. To test our pathway under optimal conditions for enzyme activity, we used a TALE strain of the minimal cell that had previously been evolved to grow at elevated temperatures.
The process involved serial passaging of the minimal cells in liquid SP4 media, with a gradual increase in incubation temperature across multiple generations. Cells were initially cultured at 37°C, their native optimal temperature, and once growth was observed, small aliquots were transferred to fresh media and incubated at slightly higher temperatures (e.g., 38°C, 39°C, 40°C, etc.). This stepwise thermal selection continued over time, ultimately reaching 43.7°C. All culturing was performed inside a thermocycler, which allowed precise control of temperature conditions throughout the adaptation process. At each stage, only the cultures that showed healthy growth (pH indicator in culture turning yellow) were carried forward, effectively selecting for spontaneous mutations that supported thermal tolerance.
Minimal Cell Cultures ranging from 37C (Left) to 43.7C (Right)
Thermocycler with temperature gradient
After evolving these TALE strain and confirmed its viability at 43.7°C, we then transformed these cells with two POAP sub-pathway constructs:
TALE A1: Containing ACS + PFOR, designed to convert acetate into pyruvate.
TALE B1: Containing PYC + OAH, designed to convert pyruvate into acetate.
The cells showed consistent and robust growth at 41.5°C, but no visible growth at 43.7°C. This confirmed that the strain was successfully adapted to grow above its native 37°C limit, with 41.5°C identified as its new optimal growth temperature.
The TALE strain grew at 41.5°C but failed to grow at 43.7°C, which may still fall short of the optimal range for certain heat-sensitive enzymes like PFOR.
The specific mutations responsible for thermal adaptation were not identified, leaving open the possibility of unintended genetic effects.
As a highly reduced organism, JCVI Syn3.0b may have limited capacity to manage thermal stress compared to more complex cells.
The TALE process successfully expanded the thermal tolerance of JCVI Syn3.0b, enabling consistent growth at 41.5°C. This adaptation allows the minimal cell to serve as a more suitable chassis for testing temperature-sensitive enzymes like PFOR, which are central to the POAP carbon fixation pathway. While the strain did not reach growth at 43.7°C, its ability to thrive above the native 37°C limit marks an important step toward optimizing minimal cells for synthetic biology applications that require elevated temperatures.
Made by Licha Tatiyaratana