Table 1 is a snapshot of the raw bee dataset where each line represents an individual specimen. The yellow block includes information about the site and data collection, the response variables in green are the bumble bee species, richness, and count (interpreted as abundance for the purpose of this website), and the orange block are the predictor variables. Not included in this table are the flower species which were stored in a different, but similarly designed dataset. This dataset was used directly for objective 1. For objective 2, a pivot table was used on the dataset to turn the content of the "BEE_SPP" column into their own columns, thus generating a species matrix. This process was repeated for the flower dataset.
Box plots are an excellent way to compare data distributions between treatments. In Figure 8 we can see that there were some extreme outliers in the data. The bumble bee abundance did not differ significantly between border types for either the first or third sample round (Table 2; Figure 8B, 8C). The second sample round has not yet been processed so it was excluded from this exploration. We can see, however, that the third sample round had significantly higher bumble bee abundance than the first sample round (p = 0.001; Figure 8D). Bumble bee richness had similar trends in the data except for a single outlier found in herbaceous crop borders in the third sample round (Figure 9C). Likewise, the third sample round had significantly higher bumble bee richness than the first sample round (p < 0.001; Table 2).
Figure 8. Bumble bee abundance between crop border types (A), bumble bee abundance between crop border types for the first sampling round (B), bumble bee abundance between crop border types for the third sample round (C), bumble bee abundance between the two sample rounds (D). Lowercase letters indicate significance.
Figure 9. Bumble bee richness between crop border types (A), bumble bee richness between crop border types for the first sampling round (B), bumble bee richness between crop border types for the third sample round (C), bumble bee richness between the two sample rounds (D). Lowercase letters indicate significance.
Figure 10. Distribution of bee abundance at treed crop borders (A), log transformed distribution of bee abundance at treed crop borders (B), distribution of bee abundance at herbaceous crop borders (C), log transformed distribution of bee abundance at herbaceous crop borders (D), bumble bee richness next to treed crop borders (E), and bumble bee richness next to herbaceous crop borders (F). A constant value of 1 was added for the log transformations to account for zero values.
Another way to visualize the distribution can be done using histograms. Here we see that the bumble bee distribution for both treed and herbaceous sites were heavily right-skewed (Figure 10A, 10C). After applying a log-transformation the distribution became roughly normal (Figure 10B, 10D). The bumble bee richness distributions were somewhat normally distributed so no transformation was conducted (Figure 10E, 10F).
Like the bumble bee abundance data, the floral abundance data also had a few extreme outliers (Figure 11). When comparing crop border types and sample rounds, however, there were no significant differences between the datasets (Table 3). This was also true for the flower richness as well (Table 3; Figure 12).
Figure 11. Floral abundance between crop border types (A), floral abundance between crop border types for the first sampling round (B), floral abundance between crop border types for the third sample round (C), floral abundance between the two sample rounds (D). Lowercase letters indicate significance.
Figure 12. Floral richness between crop border types (A), floral richness between crop border types for the first sampling round (B), floral richness between crop border types for the third sample round (C), floral richness between the two sample rounds (D). Lowercase letters indicate significance.
Figure 13. Distribution of floral abundance at treed crop borders (A), log transformed distribution of floral abundance at treed crop borders (B), distribution of floral abundance at herbaceous crop borders (C), log transformed distribution of floral abundance at herbaceous crop borders (D), floral richness next to treed crop borders (E), and floral richness next to herbaceous crop borders. A constant value of 1 was added for the log transformations to account for zero values.
Like the bumble bee distribution, floral distribution for treed and herbaceous sites were heavily right-skewed (Figure 13A, 13C). A log-transformation was also applied to this data. Both became more normalized, although the floral abundance next to treed crop borders still had a large proportion of zero values (Figure 13B, 13D). The floral richness distributions for both crop border types were bimodal but no transformation was conducted (Figure 13E, 13F).
When plotting bumble bee abundance over floral abundance there was no clear trend and each point was clustered close to zero as expected based on the histograms shown in figures 10 and 13 (Figure 14A). The points were more spread out after both bumble bee and floral abundances were log-transformed and still no clear trend was visible (Figure 14B). Models that fit the data (controlled for trap hours) can be found on the Results page of this website (Figure 16).
Similarly, no trend was clearly visible when plotting bumble bee abundance over floral richness (Figure 14C, 14D), bumble bee richness over floral abundance (Figure 14E, 14F), or bumble bee richness over floral richness (Figure 14G). Likewise, models were fitted to the data in the Results page (Figure 16).
Figure 14. Bumble bee abundance over floral abundance (A), log-transformed Bumble bee abundance over log-transformed floral abundance (B), bumble bee abundance over floral richness (C), log-transformed bumble bee abundance over floral richness (D), bumble bee richness over floral abundance (E), bumble bee richness over log-transformed floral abundance (F), and bumble bee richness over floral richness (G). A constant value of 1 was added for the log transformations to account for zero values.
Across both sampling rounds I observed 13 bumble bee species and 28 flower species (Table 4). The Golden northern bumble bee and Frigid bumble bee were unique to the first sampling round, while the Yellow-banded bumble bee, American bumble bee and Cryptic bumble bee were unique to the third sampling round. Likewise, the first floral survey and third floral survey had 5 and 8 species unique to them, respectively (Table 4).
To visualize community structures I ran principal component analyses on the flower and bumble bee species matrices for both sample rounds (Figure 15). Before I ran the principal component analyses I removed species with no observations in a given sample round and Hellinger transformed the data to reduce the importance of common species and to meet the principal component analysis assumption of no outliers. I also attempted Wisconsin double standardization which is another common transformation that is useful for making rare species more important. The Wisconsin double standardized principal component proportion of variance explained was far lower than Hellinger transformation principal component proportion of variance explained which is another reason I opted for Hellinger transformed data.
The principal component proportions explained for the flower communities and the bumble bee communities were quite low (<40%) indicating that there was low species correlations within their respective communities. Regardless, we can still interpret what we have from the principal component analyses, we just have to take the correlations in Figure 15 with a grain of salt. Note that Figure 15 only shows species with loading values above 0.1, Table 5 (Results page) includes the principal component loading values for each species.
In the first floral survey Alfalfa and Yellow sweet clover were positively correlated with one another. Trefoil clovers were not positively correlated with any other flowering species. However, they, along with Alfalfa and Yellow sweet clover, were slightly negatively correlated with Canada goldenrod, Field pennycress, Dandelion, and Tufted vetch, which they themselves were all positively correlated with one another. There was no clear grouping for the treed and herbaceous sites which indicates that trees did not affect the floral community in this setting (Figure 15A).
For the third floral survey, Canada thistle and Field sowthistle were positively correlated and both were negatively correlated with Tansy and somewhat negatively correlated with Alfalfa. Alfalfa was also negatively correlated with Western showy aster and Canada goldenrod, but slightly positively correlated with Tansy and Trefoil clovers. Trefoil clovers were strongly negatively correlated with Western showy aster and Canada goldenrod (Figure 15C).
Like in the first floral survey, the third floral survey also observed no flower species being correlated with either crop border type (Figure 15C). This is where the similarities end, however. The floral communities observed changed over time. The first floral survey had 8 unique species observed, meanwhile the third floral survey had 5 unique species (Table 4). Notably, no Tufted vetch was observed in the third floral survey which drove it's community in the first floral survey (Figure 15A). Another difference between the two is that in the first floral survey Trefoil clovers and Yellow sweet clover were not correlated positively or negatively, but in the third floral survey, the two flowering species were slightly positively correlated as mentioned in the previous paragraphs (Figure 15A, 15C).
As for the first sampling round of bumble bees, Yellow-banded bumble bee and Yellow-fronted bumble bee are highly positively correlated with one another and are slightly positively correlated with Central bumble bee and Half-black bumble bee but slightly negatively correlated with Red belted bumble bee. Central bumble bee and Half-black bumble bee are highly positively correlated to one another but slightly positively correlated with Red belted bumble bee. Central bumble bee, Half-black bumble bee, and Red belted bumble bee are slightly negatively correlated with both Frigid bumble bee and Northern amber bumble bee which they themselves are strongly positively correlated with one another (Figure 15B).
The principal component analysis for the second bumble bee sampling round was far simpler than the first. Here Sanderson bumble bee, Yellow-fronted bumble bee, and Central bumble bee were strongly positively correlated and were all slightly negatively correlated with Yellow-banded bumble bee, Red-belted bumble bee, and Northern amber bumble bee. Red-belted bumble bee and Northern amber bumble bee were positively correlated with each other, with Northern amber bumble bee being slightly negatively correlated with Half-black bumble bee and Yellow-banded bumble bee which they themselves were positively correlated with one another. No bumble bee species appeared to be associated with either crop border type (Figure 15D).
Like the flower communities, the bumble bee communities changed over time. Both the first and third sample rounds had 2 and 3 unique bumble bee species, respectively (Table 4). Interestingly, the species correlations changed between the two sample rounds as well. For example, in the first sampling round Northern amber bumble bee and Red belted bumble bee are negatively correlated (Figure 15B) but are quite positively correlated in the third sample round (Figure 15D).
Figure 15. Principal component analyses on the first floral survey (A), the first bumble bee sampling round (B), the third floral survey (C), and the third bumble bee sampling round (D). Columns with no observations were removed and matrices were Hellinger transformed. Species with loading values <0.1 were excluded from the biplots to avoid clutter.