Publication lists of previous laboratories

Dr. Keiichi Konoki

Original Papers, Proceedings, Patents and etc.

(1)           [Corresponding Author] Konoki, K.*, Hashimoto, M., Honda, K., Tachibana, K., Hasegawa, F., Tamate, R., Oishi, T., Murata, M.* Maitotoxin-photoactive probe binds to membrane proteins in blood cells, Heterocycles 2009, in press.

(2)           [Proceeding] Oishi, T.*, Torikai, K., Hasegawa, F., Ujihara, S., Mouri, R., Tamate, R., Konoki, K., Matsumori, N., Murata, M.*, Aimoto, S. Design and synthesis of ladder-shaped polyethers for exploring interaction with transmembrane protein. In Symposium Papers for 50th Symposium on The Chemistry of Natural Products 2008, pp. 65-70.

(3)           Ujihara, S., Oishi, T.*, Torikai, K., Konoki, K., Matsumori, N., Murata, M.*, Oshima, Y., Aimoto, S. Interaction of ladder-shaped polyethers with transmembrane alpha-helix of glycophorin A as evidenced by saturation transfer difference NMR and surface plasmon resonance, Bioorg. Med. Chem. Lett. 2008, 18, 6115-6118.

(4)           Oishi, T.*, Hasegawa, F., Torikai, K., Konoki, K., Matsumori, N., Murata, M.* Convergent synthesis and biological activity of the WXYZA'B'C' ring system of maitotoxin, Org. Lett. 2008, 10, 3599-3602. 

(5)           Torikai, K., Oishi, T.*, Ujihara, S., Matsumori, N., Konoki, K., Murata, M.*, Aimoto, S. Design and synthesis of ladder-shaped tetracyclic, heptacyclic, and decacyclic ethers and evaluation of the interaction with transmembrane proteins. J. Am. Chem. Soc. 2008, 130, 10217-10226.

(6)           Mouri, R., Konoki, K., Matsumori, N., Oishi, T., Murata, M.* Complex formation of amphotericin B in sterol-containing membranes as evidenced by surface plasmon resonance. Biochemistry 2008,47, 7807-7815.

(7)           Morsy, N., Konoki, K., Houdai, T., Matsumori, N., Oishi, T., Murata, M.*, Aimoto, S. Roles of integral protein in membrane permeabilization by amphidinols. Biochim. Biophys. Acta 2008, 1778, 1453-1459.

(8)           Morsy, N., Houdai, T., Konoki, K., Matsumori, N., Oishi, T., Murata, M.* Effects of lipid constituents on membrane-permeabilizing activity of amphidinols. Bioorg. Med. Chem. 2008, 16, 3084-3090.

(9)           [Review] Murata, M.*, Matsumori, N., Konoki, K., Oishi, T. Structural features of dinoflagellate toxins underlying biological activity as viewed by NMR. Bull. Chem. Soc. Japan, 2008, 81, 307-319.

(10)        [Corresponding Author] Sugiyama, N., Konoki, K.*, Tachibana, K.* Isolation and characterization of okadaic acid binding proteins from the marine sponge Halichondria okadai. Biochemistry2007, 46, 11410-11420.

(11)        [Review] Catterall, W. A.*, Cestèle, S., Yarov-Yarovoy, V., Yu, F. H., Konoki, K., Scheuer, T. Voltage-gated ion channels and gating modifier toxins. Toxicon 2007, 49, 124-141.

(12)        [Proceeding] Ujihara, S., Torikai, K., Mouri, R., Mori, M., Konoki, K., Matsumori, N., Oishi, T.*, Murata, M.* Investigation on interaction Between ladder-shaped polyether compounds and membrane protein. In Symposium Papers for 49th Symposium on The Chemistry of Natural Products 2007, pp. 467-472.

(13)        [Proceeding] Bricelj, V. M.*, Connell, L., Konoki, K., Macquarrie, S. P., Scheuer, T., Catterall, W. A., Trainer, V. L. Mya arenaria inhabiting in eastern coast of Canada acquired a defence mechanism against annual paralytic shellfish poisoning. In Symposium Papers for 48th Symposium on The Chemistry of Natural Products 2006, pp. 49-54.

(14)        Bricelj, V. M.*, Connell, L., Konoki, K., Macquarrie, S. P., Scheuer, T., Catterall, W. A., Trainer, V. L. 2005. Sodium channel mutation leading to saxitoxin resistance in clams increases risk of PSP.Nature 2005, 434, 763-767.

(15)        Hulme, J. T., Konoki, K., Lin, T. W., Gritsenko, M. A., Camp 2nd, D. G., Bigelow, D. J., Catterall, W. A.* Sites of proteolytic processing and noncovalent association of the distal C-terminal domain of CaV1.1 channels in skeletal muscle. Proc. Natl. Acad. Sci. USA 2005, 102, 5274-5279.

(16)        Konoki, K., Sugiyama, N., Murata, M., Tachibana, K.*, Hatanaka Y. Development of biotin-avidin technology to investigate okadaic acid-promoted cell signaling pathway. Tetrahedron 2000, 56, 9003-9014.

(17)        Konoki, K., Sugiyama, N., Murata, M., Tachibana, K.* Direct observation of binding between biotinylated okadaic acids and protein phosphatase 2A monitored by surface plasmon resonance. Tetrahedron Lett. 1999, 40, 887-890.

(18)        Konoki, K., Hashimoto, M., Murata, M.*, Tachibana, K. Maitotoxin-induced calcium influx in erythrocyte ghosts and rat glioma C6 cells, and blockade by gangliosides and other membrane lipids.Chem. Res. Toxicol. 1999, 12, 993-1001.

(19)        Konoki, K., Hashimoto, M., Nonomura, T., Sasaki, M., Murata, M.*, Tachibana, K. Inhibition of maitotoxin-induced Ca2+ influx in rat glioma C6 cells by brevetoxins and synthetic fragments of maitotoxin. J. Neurochem. 1998, 70, 409-416.

(20)        Paul, G. K., Matsumori, N., Konoki, K., Murata, M., Tachibana, K.* Chemical structures of amphidinol 5 and 6 isolated from marine dinoflagellate Amphidinium klebsii and their cholesterol-dependent membrane disruption. J. Mar. Biotech. 1997, 5, 124-128.

(21)        Konoki, K., Hashimoto, M., Murata, M., Tachibana, K.*, Yasumoto, T. Blockade of MTX-induced Ca2+ influx in rat glioma C6 cells by alkylamines. J. Nat. Toxins 1996, 5, 209-217.

(22)        Hu, M., Konoki, K., Tachibana, K.* Cholesterol-independent membrane disruption caused by triterpenoid saponins. Biochim. Biophys. Acta 1996, 1299, 252-258.

(23)        [Proceeding] Paul, G. K., Matsumori, N. Konoki, K., Murata, M., Tachibana, K.* 1996．Structure of amphidinol 3 and its cholesterol-independent membrane perturbation: A strong antifungal metabolites produced by dinoflagellate Amphidinium klebsii．In Harmful and Toxic Algal Blooms, eds. T. Yasumoto, Y. Oshima and Y. Fukuyo (Intergovernmental Oceanographic Commission of UNESCO, Paris), 1996, pp. 503-506.

(24)        [Proceeding] Konoki, K., Sasaki, M., Tachibana, K.* Membrane perturbation of pardaxins, defensive peptides of flatfish. In Peptide Chemistry 1992, ed. N. Yanaihara (ESCOM Science Pub., Leiden), 1993, pp. 402-405.

Dr. Yuko Cho

Original Papers, Proceedings, Patents and etc. (26th February, 2011)

１．Effects of mitomycin C and colchicine on toxin production and cell cycle regulation in the dinoflagellate, Alexandrium tamarense, Yuko Cho*, Motoo Ogawa, Mayumi Hirota, and Yasukatsu Oshima, Harmful Algae, 10 (2011), pp. 235-244 

.

2． Purification and characterization of paralytic shellfish toxin transforming enzyme, sulfocarbamoylase I, from Japanese bivalve, Peronidia venulosa. Biochimica et Biophysica Acta - Proteins and Proteomics, Yuko Cho*, Noriyuki Ogawa, Miyako Takahashi, His-Pin Lin, Yasukatsu Oshima, 2008, BBA - Proteins and Proteomics 1784 (2008), pp. 1277-85.

3. Non-toxic and toxic subclones obtained from a toxic clonal culture of Alexandrium tamarense (Dinophyceae): toxicity and molecular biological feature.　Harmful Algae, 2008, Yuko Cho*, Kaori Hiramatsu, Motoo Ogawa, Takuo Omura, Takashi Ishimaru and　Yasukatsu Oshima, Harmful Algae 7 (2008), pp. 740-751.

4. Genetic Characteristics of nontoxic subclones obtained from toxic clonal culture of Alexandrium tamarense (Dinophyceae).Yuko Cho, Kaori Hiramatsu, Motoo Ogawa, Takuo Omura, Takashi Ishimaru　and Yasukatsu Oshima, Proceedings of 12th International Conference on Harmful Algae, 2006, 59-61.

5. Purification and characterization of paralytic shellfish toxin transforming enzyme from Mactra chinensis

His-Pin Lin, Yuko Cho, Hitoshi Yashiro, Tomoko Yamada and Yasukatsu Oshima

Toxicon, 44 (2004) 657-668.

6. Molecular Characterization of Short-Chain Acyl-CoA Synthetase

Takahiro Fujino, Hiroyuki Sato, Yuko Cho and Tokuo T. Yamamoto

144-145 , T. Kita, M. Yokode (eds.), in Lipoprotein Metabolism and Atherogenesis

Springer-Verlag Tokyo 2000July.

7. Role of Apolipoprotein E Receptors in Lopoprotein Metabolism

Tokuo T. Yamamoto, Yousuke Inagaki, Ryoichi X. Ioka, Shiroh Z. Yoshioka, Kenta Magoori, Man-Jong Kang, Yuko Cho, Akira Z. Nakano, Qiong Liu, Takahiro Fujino, and Dong-Ho Kim

104 - 107, T. Kita, M. Yokode (eds.), in Lipoprotein Metabolism and Atherogenesis

Springer-Verlag Tokyo 2000July.

8. A New Low Density Lipoprotein Receptor Related Protein, LRP5, Is Expressed in Hepatocytes and Adrenal Cortex, and Recognizes Apolipoprotein E

Dong-Ho Kim, Yousuke Inagaki, Takashi Suzuki, Ryoich X. Ioka, Shiroh Z. Yoshioka, Kenta Magoori, Man-Jong Kang, Yuko Cho, Akira Nakano, Qiong Liu, Takahiro Fujino, Hiroyuki Suzuki, Hironobu Sasano, and Tokuo T. Yamamoto

J. Biochem., 124, 1072-1076 (1998).

9. Optimal Operating Conditions for b-Carotene Production Using Carrot Cells Cultivated in an External Loop Airlift Bubble Column

Katsumi Nakao, Yoshinori Keyaki, Yasuhiro Yamamoto, Yuko Cho, Hitoshi Funahashi and Kimitoshi Fukunaga 

Proceedings of 7th International Conference on Computer Applications in Biotechnology, pp. 195 - 200, 1998.

10. A Kinetic Model for b-Carotene Production by Carrot Cells Cultivated in an Airlift Bubble Column

Katsumi Nakao, Yasuhiro Yamamoto, Yuko Cho, Hitoshi Funahashi and Kimitoshi Fukunaga

Chemical Engineering Symposium Series, 1998, Sep., No. 61, pp. 154-158.

11. Influence of Culture Conditions on the Production of b- and a-Carotenes by Carrot Cells

Yuko Cho, Hitoshi Funahashi, Kimitoshi Fukunaga and Katsumi Nakao

Chemical Engineering Symposium Series, 1998, Sep., No. 61, pp. 149-153.

12. Determination of Organophosphorus Pesticides in Biological samples of Acute Poisoning by HPLC with Diode-Array Detector 

Yuko Cho, Nancy Matsuoka and Akira Kamiya

Chem. Pharm. Bull. 1997, 45 (4) 737-740.

13. Biologically Active Glycosides from Asteroidea, XXIX

X-Ray Crystallographic Analysis of Desulfated Asterosaponin P1 Isolated from the Starfish Asterina pectinifera 

Yuko Cho, Ryuichi Higuchi, Nobuhiro Marubayashi, Ikuhiko Ueda and Tetsuya Komori

Liebigs Ann. Chem. 1992, 79-81.

14. Biologically Active Glycosides from Asteroidea, XVIII

1H-NMR Spectroscopy and Biological Activities of Polyhydroxylated Steroids from the Starfish Asterina pectinifera Muller et Troschel

Ryuichi Higuchi, Yuko Noguchi, Tetsuya Komori and Takuma Sasaki

Liebigs Ann. Chem. 1988, 1185-1189.

15. Thermal Degradation of Glycosides, II

Thermal Effect on Acetates of Typical Triterpenoid and Steroid Glycosides

Ryuichi Higuchi, Yuko Noguchi, Yoichi Kitamura, Youn Chul Kim and Tetsuya Komori

Liebigs Ann. Chem. 1988, 775-779.

16. Biologically Active Glycosides from Asteroidea, XIV

Steroid Oligoglycosides from the Starfish Asterina pectinifera Muller et Troschel, 2

Structures of Two New Oligoglycoside Sulfates: Pectinioside C and Pectinioside D

Marie-Aleth Dubois, Yuko Noguchi, Ryuichi Higuchi and Tetsuya Komori

Liebigs Ann. Chem. 1988, 495-500.

17. Biologically Active Glycosides from Asteroidea, XII

Steroid Oligoglycosides from the Starfish Asterina pectinifera Muller et Troschel, 1

Structures of Two New Sapogenins and Two New Oligoglycoside Sulfates: Pectinioside A and Pectinioside B

Yuko Noguchi, Ryuichi Higuchi, Nobuhiro Marubayashi and Tetsuya Komori

Liebigs Ann. Chem. 1987, 341-348.

2. Colums

(1)               二枚貝の麻痺性貝毒変換酵素・長由扶子，小川徳之，大島泰克．化学と生物　2009, 47, 80-82.

Dr. Yuta  Kudo(工藤雄大)　Paper list in the previous laboratory (UCSD) (15st May, 2021)

Kaitlin E. Creamer, Yuta Kudo, Bradley S. Moore and Paul R. Jensen*, Phylogenetic analysis of the salinipostin γ-butyrolactone gene cluster uncovers new potential for bacterial signalling-molecule diversity, Microb. Genom., 2021, 7, 000568. 

https://doi.org/10.1099/mgen.0.000568

Yuta Kudo, Takayoshi Awakawa, Yi-Ling Du, Peter A. Jordan, Kaitlin E. Creamer, Paul R. Jensen, Roger G. Linington, Katherine S. Ryan, and Bradley S. Moore,* Expansion of Gamma-Butyrolactone Signaling Molecule Biosynthesis to Phosphotriester Natural Products, ACS Chem. Biol. 2020, 15, 12, 3253–3261. 

https://doi.org/10.1021/acschembio.0c00824

Xiaoyu Tang,‡ Yuta Kudo,‡ Jonathon L. Baker,‡ Sandra LaBonte, Peter A. Jordan, Shaun M. K. McKinnie, Jian Guo, Tao Huan, Bradley S. Moore,* Anna Edlund* (‡ contributed equally to this work), Cariogenic Streptococcus mutans produces tetramic acid strain-specific antibiotics that impair commensal colonization, ACS Infect. Dis., 2020, 6, 4, 563–571.  

https://dx.doi.org/10.1021/acsinfecdis.9b00365

Christian Schlawis, Simone Kern, Yuta Kudo, Jörg Grunenberg, Bradley S. Moore, Stefan Schulz,* Structural elucidation of trace components combining GC/MS, GC/IR, DFT‐calculation and synthesis—Salinilactones, unprecedented bicyclic lactones from Salinispora bacteria, Angew. Chem. Int. Ed., 2018, 57, 14921-14925.

https://doi.org/10.1002/anie.201807923

Gregory C. A. Amos, Takayoshi Awakawa, Robert N. Tuttle, Anne-Catrin Letzel, Min Cheol Kim, Yuta Kudo, William Fenical, Bradley S. Moore, Paul R. Jensen,* Comparative transcriptomics as a guide to natural product discovery and biosynthetic gene cluster functionality, Proc. Natl. Acad. Sci. USA, 2017, 114, 11121-11130.

https://doi.org/10.1073/pnas.1714381115