The purpose of an animal breeding plan is to look at and improve genetic diversity, increase the efficiency of an animal for its specific purpose, obtain a desired breed, obtain desired traits and reduce undesirable traits, breed for disease resistance or to avoid lethal traits. In reproductive physiology, it is important to create breeding plans to select for traits that can help for successful reproduction such as conformation, specific reproductive anatomy traits, temperament, selection against disease, etc.
Due to high numbers of stray/feral cats, many cats mating randomly on their own without selection for certain traits. They are not specifically bred by cat breeders for a purpose. This are where most of our domestic shirt/long hairs and companion cats come from (6).
Preserving a breed and its characteristics: For show cats and companion cats, specific breed characteristics are important to preserve and pass on in future generations. This is achieved through genetic selection and inbreeding/pure breeding.
Having a healthy animal and preventing diseases: It is important to ensure all cats, specifically companion animals, are healthy and free of disease which can be achieved through specific selection against certain genetic traits such as flat chested kitten syndrome (5)
Cross breeding to improve specific characteristics: Crossing two breeds of cat can be done to improve specific characteristics such as temperament, eye color, hair color and pattern, ear placement, etc.
While this website focuses on reproduction in the domestic cat, it should be noted that increasing species numbers for exotic cats is a major breeding objective in zoo and sanctuary settings. The purpose of these large exotic cat breeding plans is to produce genetically diverse and healthy offspring in large cat species that are endangered, in the hopes to increase population numbers (10).
The purpose of creating a breeding plans for cats is to produce offspring that can be used for show, as a pet/companion or as a hunting cat for rodent control. As an example, creating a breeding plan for a show cat may put emphasis on selection for traits like coat color and length whereas a breeding plan for a companion cat may put emphasis on selection for a good temperament.
Hunting skills and temperament are polygenic traits which means many genes effect the performance of these traits. They are quantitative traits.
Fur color and eye color are simply-inherited traits which means one or a few genes effect the performance of these traits. They are more qualitative or categorial traits and more influenced by environmental factors.
Figure 1: Genetic locus determining coat color in domestic cats
One favorable trait breeders often target is coat color. Determining the coat color genes may require multiple breedings, however, DNA testing can also be used instead (8). As shown in Table 1 (below) and Figure 1, coat color and pattern phenotypes are controlled by a variety of genes (8). The brown locus (B/b/bl) controls the production of eumelanin, the type of melanin responsible for the brown and black colors. The dilution locus (D/d) controls the distribution of pigmentation in the fur shaft. The O locus (O/o) on the X chromosome produces pheomelanin instead of eumelanin, resulting in orange fur. Another common trait favored by breeders is hair length, which, like color, is simply inherited via the fibroblast growth factor 5 (FGF5) gene. Short hair is a dominant trait, long hair is recessive, and a heterozygous cat results in mid-length hair (2).
Table 1. The genes that control coat color phenotypes in domestic cats.
Modified from Source: The Veterinary Genetics Laboratory of the School of Veterinary Medicine at UC Davis
Some unfavorable traits exist that breeders should attempt to avoid. Blood typing is crucial when mating, as pairing a Type B Queen with a Type A Tom can result in neonatal isoerythrolysis (Ni). Breeders should take special care to test blood types with high type B breeds like British Shorthairs, Devon Rexes, and Birmans (4). Behavioral traits also play a significant role in the selection process. Behavioral traits can often be polygenetic and may correlate to other genes affecting fur or eye color (polygenetic) (5). For example, heritable behavioral traits can influence a cat's level of extraversion, shyness, and aggression toward humans and other cats (7). Since breed differences in these behavioral traits are common, pre-mating behavioral observations are invaluable to inform selection.
Certain specific unfavorable simply inherited traits are actively selected against by breeders, such as kinked tails, hemophilia, and flat-chested kitten syndrome, which are recessive (5). Meanwhile, simply inherited dominant traits like hypodactyly (split-foot) and polydactyly are also selected against (5). Polydactyly is a condition where cats have extra digits and can range from one or two extra toes to an entire foot growing out of that leg. Hypodactyly is the fusion of two or more digits (3). The most common form of hypodactyly is called ectrodactyly and is characterized by a central "split" and two toes, hence, the term "split-foot" (3). Though often benign, polydactyly and hypodactyly are commonly considered in the selection process.
Figure 2: A. Polydactyly in a kitten. B. Hypodactyly in a kitten. C. Radiograph of the forepaws of a cat with hypodactyly.
Image Sources: A: rover.com; B & C: Hartwell (2022)
Figure 3: Retained testicle (Cryptorchidism) in a tom cat.
Image Source: Modified from VCACanada
Because preserving breeds and preventing diseases are central to our breeding objectives, health concerns form a significant part of the selection criteria. While rare, some congenital and inherited defects can still occur, such as cerebellar hypoplasia, often caused by prenatal exposure to feline panleukopenia (parvovirus), requiring virus testing in queens (1). Other concerns like eye and eyelid defects, cardiac defects, cleft palates, and cryptorchidism (Figure 3) can be identified through physical exams of the queen and tom (1). Special considerations also include other traits like polydactyly or the association of deafness with white fur and blue eyes, the latter requiring a hearing test (1).
Inbreeding is mating two animals that are closely related. This increases uniformity and homozygosity. Inbreeding is used more for breeding show cats to acquire more breed specific traits (9).
Line Breeding - mating animals with common ancestors (5)
Pure Breeding - mating animals with registered ancestry (5)
(Because of cats history of random breeding and the range or traits different breeds have, there are not many purebred cats. Around 98% of cats are classified as Domestic shorthairs or longhairs which are "mixed" breeds. Thus, in cats, pure breeding is mostly inbreeding (6).)
Outbreeding is mating two animals that are not closely related. This increases diversity and heterozygosity. Outbreeding is used more for breeding hunting cats and companion cats to obtain traits from a range of options.
Outcrossing - mating animals not closely related but are within the same breed
Crossbreeding - mating animals of different breeds
*all information was from source 9
Allen, D. (2018). Congenital and Inherited Disorders Affecting Multiple Body Systems of Cats. Merk Veterinary Manual. https://www.msdvetmanual.com/cat-owners/disorders-affecting-multiple-body-systems-of-cats/congenital-and-inherited-disorders-affecting-multiple-body-systems-of-cats
Drögemüller, C., Rüfenacht, S., Wichert, B., and Leeb, T. (2007). Mutations within the FGF5 gene are associated with hair length in cats. Animal Genetics. 38: 218-221. https://doi.org/10.1111/j.1365-2052.2007.01590.x
Hansen, R. R. (2019). Congenital and Inherited Anomalies of the Musculoskeletal System in Dogs and Cats. Merk Veterinary Manual. https://www.merckvetmanual.com/musculoskeletal-system/congenital-and-inherited-anomalies-of-the-musculoskeletal-system/congenital-and-inherited-anomalies-of-the-musculoskeletal-system-in-dogs-and-cats
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Moreland, S., Lacey, J. (2022) Basic Cat Genetics GCCF https://www.gccfcats.org/wp-content/uploads/2021/09/BasicCatgenetics.January2022.pdf
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Salonen, M., Vapalahti, K., Tiira, K., Mäki-Tanila, A., and Lohi, H. (2019). Breed Differences of Heritable Behavior Traits in Cats. Scientific Reports. https://doi.org/10.1038/s41598-019-44324-x
The Veterinary Genetics Laboratory. (2022). Feline Coat Color. The Veterinary Genetics Laboratory, School of Veterinary Medicine, University of California, Davis. https://vgl.ucdavis.edu/resources/cat-coat-color
VanKlompenberg, M. (2022) Animal Breeding Plans
Pukazhenthi B. (2013) Saving the African Lion in North American Zoos https://nationalzoo.si.edu/conservation/news/saving-african-lion-north-american-zoos