Data Sources
At present much of the COVID-19 datas available are in the form of daily or weekly reports, not made immediately available as datasets. Many of the main visualization and tracking sites (NYT) are doing the work to format these reports into a useful format. So the available data is of three general types: text reports (usually the most up to date, from primary sources), datasets (presented here, please contact if others are found) and/or visualizations/dashboards (WHO does this, eg. maps, charts).
Note: https://github.com/search?q=covid contains 20,000+ results ranging from the NYT (included in our list) to individuals and organizations internationally. We cannot verify these sources, please proceed with caution.
Google COVID-19 Public Datasets
(added 3/30)
COVID-19 Public Datasets program to make data more accessible to researchers, data scientists and analysts. The program will host a repository of public datasets that relate to the COVID-19 crisis and make them free to access and analyze. These include the Johns Hopkins Center for Systems Science and Engineering (JHU CSSE) dataset, Global Health Data from the World Bank, and OpenStreetMap data.
COVID-19 #Coronavirus Data-Pack from Information is Beautiful
(added 3/30)
Regularly updated google spreadsheet: % infections mild, severe, critical, recoveries, deaths by age group, mortality rate by existing conditions, cumulative cases, incubation period, fatality rate by country, mentions in the media, average deaths per day, other data/work progress.
COVID Act Now-US Model for Response Variables
(added 3/30)
Model available via google spreadsheets and interactive map
Kaggle: a Data Science Community's COVID-19 Response
(added 3/30)
The goal of this page is to bring together the most useful contributions from the Kaggle community's COVID-19 work into a single place. It is organized into literature review, tools and datasets.
https://www.kaggle.com/covid-19-contributions
World Health Organization (WHO)
(added 3/30)
COVID-19 data displayed by region in dashboards, link to a search by keyword, API, indicators, country and publications from this link.
COVID Tracking Project
(added 3/30)
COVID Tracking Project collects information(spreadsheet, API, CSV) from 50 US states, the District of Columbia, and 5 other US territories to provide the most comprehensive testing data we can collect for the novel coronavirus, SARS-CoV-2. We attempt to report positive and negative results, pending tests, and total people tested for each state or district currently reporting that data.
New York Times Dataset
(added 3/30)
Cumulative counts of coronavirus cases in the United States, at the state and county level, over time. We are compiling this time series data from state and local governments and health departments. The data begins with the first reported coronavirus case in Washington State on Jan. 21, 2020. We will publish regular updates to the data in this repository. Each row of data reports cumulative counts based on our best reporting up to the moment we publish an update. We do our best to revise earlier entries in the data when we receive new information.
https://github.com/nytimes/covid-19-data
COVID-19 Data for Australia
(added 3/30)
Australia: volunteer managed data on case numbers, travel histories, transmission sources and people affected. graphs and contact form.
https://www.covid19data.com.au/
Italian Government COVID Data
(added 3/30)
Italian Government COVID data. Dipartimento della Protezione Civile, in Italian w/ English metadata file.
https://github.com/pcm-dpc/COVID-19
COVID-19 Healthcare Coalition - Datasets and studies
(added 3/30)
Regularly updated data and studies from private healthcare institutions and partners.
https://c19hcc.org/resource-library
1Point3Acres Real-time COVID-19 Tracker
(added 3/30)
Privately run data aggregate, must request data directly. Real-time tracker for COVID-19 in US & Canada.
https://coronavirus.1point3acres.com/en/about
Coronavirus Testing - Source Data
(added 3/30)
A manual review of data across national reports, and included the most recent estimates that we could find as of 20 March 2020, 18:00 GMT.
https://ourworldindata.org/coronavirus-testing-source-data
COCIV-2019 Data Working Group
(added 3/30)
Includes colleagues from the University of Oxford, publishes epidemiological data from the outbreak via this global dashboard. From this dashboard it is possible to obtain the underlying data; list of cases includes individual travel history and key dates for each patient, date of onset of symptoms, date of hospitalization and date of laboratory confirmation of whether the person was infected with the COVID-19 virus or not.
This data is intended to be helpful in the estimation of key statistics for the disease: Incubation period, basic reproduction number (R0), age-stratified risk, risk of importation.
https://healthmap.org/covid-19/
John Hopkins University Coronavirus COVID-19 Global Cases, by Country
(added 3/30)
Includes the location and number of confirmed COVID-19 cases, deaths, and recoveries for all affected countries, aggregated at the appropriate province/state. It was developed to enable researchers, public health authorities and the general public to track the outbreak.
Repository of aggregated coronavirus COVID-19 cases by JHU
Global Health Data Exchange
(added 3/30)
World’s most comprehensive catalog of surveys, censuses, vital statistics, and other health-related data. It’s the place to start your health data search.
Tableau COVID-19 Workbooks and Data
(added 3/30)
Very easy multiple format data download with global stats ready to be plugged into a tableau visualization. also available in excel.
https://www.tableau.com/covid-19-coronavirus-data-resources
COVID-19 (2019-nCoV) Data Repository
(added 4/10)
This is the data repository for the 2019 novel coronavirus visual dashboard operated by the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE). Also, supported by ESRI Living Atlas Team and the Johns Hopkins University Applied Physics Lab (JHU APL).
github.com/CSSEGISandData/COVID-19
MIDIAS: Online Portal for COVID-19 Modeling Research
(added 4/13)
Since late December 2019, a new Coronavirus infectious disease (COVID-19) has spread around the world. This global outbreak has been characterized as a pandemic by the World Health Organization. Researchers, students, and others in the Models of Infectious Disease Agent Study (MIDAS) create and use computational models to study transmission dynamics of a broad range of infectious diseases. Many MIDAS members are conducting research on COVID-19 and are contributing to an extraordinary international collection of data and information regarding the outbreak.
https://midasnetwork.us/covid-19/
MIDIAS: Online Portal for COVID-19 Modeling Research
(added 4/13)
In response to the COVID-19 pandemic, the Allen Institute for AI has partnered with leading research groups to prepare and distribute the COVID-19 Open Research Dataset (CORD-19), a free resource of over 51,000 scholarly articles, including over 40,000 with full text, about COVID-19 and the coronavirus family of viruses for use by the global research community.
This dataset is intended to mobilize researchers to apply recent advances in natural language processing to generate new insights in support of the fight against this infectious disease. The corpus will be updated weekly as new research is published in peer-reviewed publications and archival services like BioRxiv, MedRxiv, and others.
https://pages.semanticscholar.org/coronavirus-research
COVID-19 Open Dataset
(added 4/13)
For fighting against COVID-19 pandemic, open and comprehensive big data may help researchers, officials and medical staffs to understand the virus and pandemic more. We have been collecting all kinds of open datasets about COVID-19 and keep updating everyday.
https://www.aminer.cn/data-covid19/
Novel Coronavirus (COVID-19) Cases Data
(added 4/13)
Novel Corona Virus (COVID-19) epidemiological data since 22 January 2020. The data is compiled by the Johns Hopkins University Center for Systems Science and Engineering (JHU CCSE) from various sources including the World Health Organization (WHO), DXY.cn. Pneumonia. 2020, BNO News, National Health Commission of the People’s Republic of China (NHC), China CDC (CCDC), Hong Kong Department of Health, Macau Government, Taiwan CDC, US CDC, Government of Canada, Australia Government Department of Health, European Centre for Disease Prevention and Control (ECDC), Ministry of Health Singapore (MOH). JSU CCSE maintains the data on the 2019 Novel Coronavirus COVID-19 (2019-nCoV) Data Repository on github.
https://data.humdata.org/dataset/novel-coronavirus-2019-ncov-cases
Novel Coronavirus (COVID-19) Cases Data
(added 4/13)
gonglab.pratt.duke.edu/google-dataset
India COVID-19 Tracker
(added 4/13)
See How Your Community Is Moving Around Differently due to COVID-19
(added 4/13)
As global communities respond to COVID-19, we've heard from public health officials that the same type of aggregated, anonymized insights we use in products such as Google Maps could be helpful as they make critical decisions to combat COVID-19. These Community Mobility Reports aim to provide insights into what has changed in response to policies aimed at combating COVID-19. The reports chart movement trends over time by geography, across different categories of places such as retail and recreation, groceries and pharmacies, parks, transit stations, workplaces, and residential.
https://www.google.com/covid19/mobility/
COVID-19 Data Science Resources
(added 4/13)
The Academic Data Science Alliance is working with partners to pull together data and data science resources related to the COVID-19 pandemic. This is a living list of resources and we welcome additions, suggestions, and collaborations. Please send additions, corrections, comments, and suggestions to us using this feedback form.
https://www.academicdatascience.org/covid
CDCCOVIDVIEW: Weekly Surveillance Summary of U.S. COVID-19 Activity
(added 4/13)
The U.S. Centers for Disease Control provides weekly summary and interpretation of key indicators that have been adapted to track the COVID-19 pandemic in the United States. Tools are provided to retrieve data from both COVIDVIEW www.cdc.gov/coronavirus/2019-ncov/covid-data/covidview/index.html and COVID-NET (gis.cdc.gov/grasp/COVIDNet/COVID19_3.html.
https://cinc.rud.is/web/packages/cdccovidview/
Cuebig: COVID-19 Mobility Insights
(added 4/13)
In response to the COVID-19 crisis, Cuebiq is providing insights to academic and humanitarian groups through a multi-stakeholder data collaborative for timely and ethical analysis of aggregate human mobility patterns.
https://www.cuebiq.com/visitation-insights-covid19/
IDSS COVID-19 Collaboration (Isolat)
(added 4/20)
IDSS COVID-19 Collaboration (Isolat) is an initiative organized by IDSS that takes a data-driven approach to addressing the COVID-19 pandemic. This volunteer effort brings together the broader community affiliated with IDSS and aims at providing systematic and rigorous analyses of data associated with this crisis in order to inform policy makers. While the specific questions are evolving as more data is collected, there are three broad areas that this group is addressing: 1) creating a data structure of heterogeneous data sets (e.g., spread of virus, mobility, interventions), 2) performing prediction of various critical time-dependent variables, and 3) understanding the effects of intervention and policies on the spread of this virus. We recognize that much of the data is noisy and that testing is evolving slowly, hence the quantification of uncertainty of our results is key to providing actionable outcomes.
https://idss.mit.edu/research/idss-covid-19-collaboration-isolat/