Publications

Kajal Chaudhary, Bhumika Agrahari, Bhumika Biswas, Niranjan Chatterjee, Ayushi Chaudhary, Ashwini Kumar, Himanshu Sonker, Sayari Dewan, Deepanshi Saxena, Abdul Akhir, Nidhi Malhotra, Sidharth Chopra, Santosh Misra, Saravanan Matheswaran, Ritika Gautam Singh*; Pyridine‐2,6‐Dicarboxamide Proligands and their Cu(II)/Zn(II) Complexes Targeting Staphylococcus Aureus for the Attenuation of In Vivo Dental Biofilm, Advanced Healthcare Materials, 13, 2024, 2400378 

Gourav Shrivastav, Subhomoi Borkotoky, Debajit Dey, Bhumika Singh, Nidhi Malhotra, Kimi Azad, B. Jayaram, Manish Agarwal*, Manidipa Banerjee*; Structure and energetics guide dynamic behaviour in a T= 3 icosahedral virus capsid, Biophysical Chemistry, 305, 2024, 107152 

Nidhi Malhotra, Shantanu Khatri, Ajit Kumar, Akanksha Arun, Purba Daripa, Saman Fatihi , Sureshkumar Venkadesan, Niyati Jain, Lipi Thukral*; AI-based AlphaFold2 significantly expands the structural space of the autophagy pathway, Autophagy, 19, 2023, 3201-3220 

Jodi Kraus, Ryan W. Russell, Elena Kudryashova, Chaoyi Xu, Nidhi Katyal, Juan R. Perilla, Dmitri S. Kudryashov, Tatyana Polenova*; Magic Angle Spinning NMR Structure of Human Cofilin-2 Assembled on Actin Filaments Reveals Isoform-Specific Conformation and Binding Mode, Nature Communications, 13, 2022, 2114 

Nidhi Katyal, Shilpa Sharma, Shashank Deep*; Delving into controversial dichotomy of direct and indirect mechanisms of Trehalose: In search of unanimous consensus, Journal of Molecular Liquids, 338, 2021, 116656 

 Nidhi Katyal, Rahila Sardar, Shahzaib Ahamad, Dhananjay D. Jade, Shakir Ali, Dinesh Gupta*; In-silico profiling and structural insights into the impact of nSNPs in the P. falciparum acetyl-CoA transporter gene to understand the mechanism of drug resistance in malaria, Journal of Biomolecular Structure and Dynamics, 39, 2021, 558-569

Nidhi Katyal, Chaoyi Xu, Tanya Nesterova, Juan R. Perilla*; Molecular determinants of Ebola nucleocapsid stability from molecular dynamics simulations, Journal of Chemical Physics, 153, 2020, 155102 

 Carolina Perez-Segura, Nidhi Katyal, Fabio Gonzalez-Arias, Alexander J Bryer, Juan R Perilla Jodi A Hadden-Perilla*; Cronavirus through Delaware’s computational microscope, Delaware Journal of Public Health, 6, 2020, 6-9 

Nidhi Katyal, Shashank Deep*; Computational approach to get insights into multiple faces of additives in modulation of protein aggregation pathway, Physical Chemistry Chemical Physics, 21, 2019, 24269-24285

Nidhi Katyal, Manish Agarwal, Raktim Sen, Vinay Kumar, Shashank Deep*; Paradoxical effect of trehalose on the aggregation of α-synuclein: Expedites onset of aggregation yet reduces fibril load, ACS Chemical Neuroscience, 9, 2018, 1477-1491           

 Nidhi Katyal, Shashank Deep*; Inhibition of GNNQQNY prion peptide aggregation by trehalose: a mechanistic view, Physical Chemistry Chemical Physics, 19, 2017, 19120-19138

Nidhi K. Bhatia, Shyam Kishor, Nidhi Katyal, Pankaj Gogoi, Payal Narang, Shashank Deep*; Effect of pH and temperature on conformational equilibria and aggregation behavior of curcumin in aqueous binary mixtures of ethanol, RSC Advances, 6, 2016, 103275-103288

Nidhi K Bhatia, Ankit Srivastava, Nidhi Katyal, Nidhi Jain, M Ashhar I Khan, Bishwajit Kundu, Shashank Deep*; Curcumin binds to the pre-fibrillar aggregates of Cu/Zn superoxide dismutase (SOD1) and alters amyloidogenic pathway resulting in reduced cytotoxicity, Biochimica et Biophysica Acta Proteins and Proteomics, 1854, 2015, 426-436

Nidhi Katyal, Shashank Deep*; Revisiting the conundrum of trehalose stabilization, Physical Chemistry Chemical Physics, 16, 2014, 26746-61

Nidhi Katyal, Unnati Ahluwalia, Shashank Deep*; Models of protein folding, Journal of proteins and proteomics, 3, 2012, 85-93