Welcome to Dr. Vipin's Classroom
* Facilitating Biologists Transition to Data Science *
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for live, participatory, non-mandatory assignment based learning with a personal touch
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Break the mental block !
YOU CAN CODE TOO !!!
BEGIN FROM SCRATCH !
For strong foundations in Bioinformatics and coding in R, Python & Next Generation Sequencing
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PYTHON FOR BIOLOGISTS
Biology today is fast transforming into data-science - curtsey the high-throughput technologies. Manual analysis of this data is neither feasible nor possible anymore.
With the data deluge in Life Science Research, programming is fast becoming a desirable and essential skill, even for wet lab researchers, for data wrangling, analysis, and data visualization.
Coding is simple, intuitive, easy to learn and truly a universal skill today with vast applications in data analysis, data visualization, automation, scaleup and precession. Unleash the power of coding -
Make a confident start by writing your first few of the many codes you may potentially write ... with me! Rediscover yourself !
Break the mental block ... you can code too !
**** UPCOMING WORKSHOPS ****
R FOR BIOLOGISTS
Biology today is fast transforming into data-science - curtsey the high-throughput technologies. Manual analysis of this data is neither feasible nor possible anymore. With the data deluge in Life Science Research, programming is fast becoming a desirable and essential skill, even for wet lab researchers, for data wrangling, analysis, and data visualization.
Coding is simple, intuitive, easy to learn and truly a universal skill today with vast applications in data analysis, data visualization, automation, scaleup and precession. Unleash the power of coding -
Make a confident start by writing your first few of the many codes you may potentially write ... with me! Rediscover yourself !
NGS Fundamentals and Data Analysis
DNASeq - Variant Calling
As Next Generation Sequencing becomes a first stop for most analysis downstream - DNASeq, RNASeq, ChIPSeq, ATACSeq, FARESeq .... etc, here is an elaborate take on the evolution of sequencing techniques - from the first to second to the third Generation, from intermediate read length (Sanger) to short reads - Illumina and Ion Torrent, to finally long read sequencing - Be my guest on this journey most remarkable as i take you through the basics of NGS Data Analysis - we extensively cover
1. The Basics of Next Generation Sequencing - Illumina, IonTorrent, Nanopore and PacBio
2. The Installations - Linux, Anaconda, Conda and tools for NGS -DNASeq analysis -Basic Linux, FASTQC, MULTIQC, SAMtools, BCFtools, IGV etc.
3. Steps involved in Genome Sequence Analysis - Quality Control, Reference Based Assembly, Variant Calling and
4.Sequencing Data Visualization with Integrated Genomics Viewer
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