Preprint
Dora L Cano-Ramirez, Haruki Nishio, Tomoaki Muranaka, Luiza Lane de Barros Dantas, Mie N Honjo, Jiro Sugisaka, Hiroshi Kudoh, Antony Dodd (2022), Circadian and environmental signal transduction in a natural population of Arabidopsis, bioRxiv, https://doi.org/10.1101/2022.09.10.507414
Peer-reviewed papers
Emiri Watanabe, Tomoaki Muranaka, Shunji Nakamura, Minako Isoda, Yu Horikawa, Tsuyoshi Aiso, Shogo Ito, Tokitaka Oyama (2023), A non-cell-autonomous circadian rhythm of bioluminescence reporter activities in individual duckweed cells, Plant Physiology in press https://doi.org/10.1093/plphys/kiad218
Naoko Emura, Tomoaki Muranaka, Takaya Iwasaki, Mie N. Honjo, Atsushi J. Nagano, Yuji Isagi, Hiroshi Kudoh (2022), Effects of fruit dimorphism on genetic structure and gene flow in the coastal shrub Scaevola taccada, Annals of Botany 130:1029-1040 Journal Pubmed
Ken-ichiro Taoka, Ikumi Kawahara, Shoko Shinya, Ken-ichi Harada, Eiki Yamashita, Zenpei Shimatani, Kyoko Furuita, Tomoaki Muranaka, Tokitaka Oyama, Rie Terada, Atsushi Nakagawa, Toshimichi Fujiwara, Hiroyuki Tsuji, Chojiro Kojima (2022), Multifunctional chemical inhibitors of the florigen activation complex discovered by structure-based high-throughput screening. Plant Journal 112:1337-1349. Journal Pubmed
Tomoaki Muranaka, Shogo Ito, Hiroshi Kudoh, Tokitaka Oyama (2022), Circadian-period variation underlies the local adaptation of photoperiodism in the short-day plant Lemna aequinoctialis, iScience 25(7), 104634 Jouranl, Pubmed, bioRxiv
Akiko Yoshida, Ken-ichiro Taoka, Aoi Hosaka, Keisuke Tanaka, Hisato Kobayashi, Tomoaki Muranaka, Kiminori Toyooka, Tokitaka Oyama, Hiroyuki Tsuji (2021), Characterization of Frond and Flower Development and Identification of FT and FD Genes From Duckweed Lemna Aequinoctialis Nd, Frontiers in Plant Science 12: 2088. Journal
Emiri Watanabe, Minako Isoda, Tomoaki Muranaka, Shogo Ito, Tokitaka Oyama (2021), Detection of Uncoupled Circadian Rhythms in Individual Cells of Lemna minor using a Dual-Color Bioluminescence Monitoring System, Plant and Cell Physiology, pcab037 Journal Pubmed
Naouki Nomura, Koichiro Matsuno, Tomoaki Muranaka, Jun Tomita (2020), Toward a Practical Theory of Timing: Upbeat and E-Series Time for Organisms, Biosemiotics 13 (3), 347-367 Journal
Tomoaki Muranaka, Tokitaka Oyama (2020), Application of Single-Cell Bioluminescent Imaging to Monitor Circadian Rhythms of Individual Plant Cells, Bioluminescent Imaging. Methods in Molecular Biology, vol 2081 Journal Pubmed
Paige Panter, Tomoaki Muranaka, David Cuitun-Coronado, Calum Graham, Aline Yochikawa, Hiroshi Kudoh, Antony Dodd (2019), Circadian regulation of the plant transcriptome under natural conditions, Frontiers in Genetics, in press Journal
Naoki Nomura, Koichiro Matsuno, Tomoaki Muranaka, Jun Tomita (in press), How Does Time Flow in Living Systems? Retrocausal Scaffolding and E-series Time, Biosemiotics. Journal
Naoki Nomura, Tomoaki Muranaka, Jun Tomita, Koichiro Matsuno (2018), Time from Semiosis: E-series Time for Living Systems, Biosemiotics, 11(1):65-83. Journal
Tomoaki Muranaka, Tokitaka Oyama (2018), Monitoring circadian rhythms of individual cells in plants, Journal of Plant Research, 131 (1), 15-21 Journal
Masaaki Okada, Tomoaki Muranaka, Shogo Ito, Tokitaka Oyama (2017), Synchrony of plant cellular circadian clocks with heterogeneous properties under light/dark cycles, Scientific Reports, 22;7(1):317 Journal
Anna-Malin Linde, D. Magnus Eklund, Akane Kubota, Eric R. A. Pederson, Karl Holm, Niclas Gyllenstrand, Ryuichi Nishihama, Nils Cronberg, Tomoaki Muranaka, Tokitaka Oyama, Takayuki Kohchi, Ulf Lagercrantz (2017), Early evolution of the land plant circadian clock, New Phytologist, 216(2):576-590 Journal
Tomoaki Muranaka, Tokitaka Oyama (2016), Heterogeneity of cellular circadian clocks in intact plants and its correction under light-dark cycles, Science Advances, 2(7): e1600500 Journal
Tomoaki Muranaka, Masaaki Okada, Jun Yomo, Saya Kubota, Tokitaka Oyama (2015), Characterization of circadian rhythms of various duckweeds, Plant Biology, 17 (s1) 66-74 Journal
Tomoaki Muranaka, Saya Kubota, Tokitaka Oyama (2013), A single-cell bioluminescence imaging system for monitoring cellular gene expression in a plant body, Plant Cell Physiology, 54 (12): 2085-2093 Journal