Publications
RESEARCH PUBLICATIONS (* = publications prior to being a Professor):
For an up to date publication list with links to articles via PubMed click here. Via Orcid clicke here.
* 1. "Design and Synthesis of a Sequence Specific DNA Cleaving Molecule. (Distamycin‑ EDTA)iron(II)", P.G. Schultz, J.S. Taylor and P.B. Dervan*, J. Am. Chem. Soc. 1982, 104, 6861‑6863.
* 2. "DNA Affinity Cleaving. Sequence Specific Cleavage by Distamycin‑EDTA‑Fe(II) and EDTA‑Distamycin‑Fe(II)", J.S. Taylor, P.G. Schultz and P.B. Dervan*, Tetrahedron 1984, 40, 457‑465.
1987
3. "DNA, Light and Dewar Pyrimidinones: The Structure and Biological Significance of TpT3." John‑Stephen Taylor* and Michael P. Cohrs, J. Am. Chem. Soc., 1987, 109, 2834‑2835.
4. "A Building Block for the Sequence Specific Introduction of cis‑syn Thymine Dimers into Oligonucleotides. Solid Phase Synthesis of TpT[c,s]pTpT." John‑Stephen Taylor*, Ian R. Brockie and Christine L. O'Day, J. Am. Chem. Soc., 1987, 109 6735‑6742.
1988
5. "Models for the Solution State Structure of the (6‑4) Photoproduct of Thymidylyl‑(3'5')‑thymidine Derived via a Distance and Angle Constrained Conformation Search Procedure." John‑Stephen Taylor*, Daniel S. Garrett and Michael J. Wang, Biopolymers, 1988, 27, 1571-1593.
6. "Synthesis of a Trans‑Syn Thymine Dimer Building Block. Solid Phase Synthesis of CGTAT[t,s]TATGC." John‑Stephen Taylor* and Ian R. Brockie, Nucleic Acids Res. 1988, 16, 5123‑5136.
7. "Solution State Structure of the Dewar Pyrimidinone Photoproduct of Thymidylyl‑(3'5')‑thymidine." John‑Stephen Taylor*, Daniel S. Garrett and Michael P. Cohrs, Biochemistry, 1988, 27, 7206‑7215.
1989
8. "Synthesis of a Bacteriophage DNA Containing a Site-Specific Cis‑Syn Thymine Dimer" John‑Stephen Taylor* and Christine L. O'Day, J. Am. Chem. Soc. 1989, 111, 401-402
1990
9. "Cis-Syn Thymine Dimers Are Not Absolute Replication Blocks to DNA Polymerase I of E. Coli." John-Stephen Taylor* and Christine L. O'Day, Biochemistry, 1990, 29, 1624-1632.
10. "Quantitative Conversion of the (6-4) Photoproduct of TpdC to a Dewar Photoproduct upon Exposure to Simulated Sunlight" John-Stephen Taylor*, Hwang-Fun Lu and John Kotyk, Photochem. Photobiol. 1990 51, 161-167.
11. "Electron Paramagnetic Resonance Studies of Pyrimidinones" Yi Lu, Tien-Sung Lin*, and John-Stephen Taylor, J. Phys. Chem. 1990 94, 4067-4068.
12. “DNA, Sunlight and Skin Cancer”, John-Stephen Taylor*, J. Chem. Ed. 1990, 67, 835-841.
13. "1H NMR Assignment and Melting Temperature Study of cis‑syn and trans‑syn Thymine Dimer Containing-Duplexes of d(CGTATTATGC)·d(GCATAATACG)" John‑Stephen Taylor*, Daniel Garrett, Ian R. Brockie, Daniel Svoboda and Joshua Telser, Biochemistry 1990, 29, 8858-8866.
1991
14. "Unraveling the Origin of the Major Mutation Induced by Ultraviolet Light, the CT Transition Mutation at dTpdC Sites. Design and Synthesis of a DNA Synthesis Building Block for the Cis-Syn Cyclobutane Dimer of dTpdU." John-Stephen Taylor* and Sourena Nadji, Tetrahedron 1991 47, 2579-2590.
15. "Site-Specific Effect of Thymine Dimer Formation on A-Tract Bending and Its Biological Implications." Cheng-I. Wang and John-Stephen Taylor*, Proc. Natl. Acad. Sci. U. S. A. 199188, 9072-9077.
1992
16. "In Vitro Evidence that UV-Induced Frameshift and Substitution Mutations at T-Tracts are the Result of Misalignment-Mediated Replication Past a Specific Thymine Dimer". Cheng-I. Wang and John-Stephen Taylor*, Biochemistry 1992, 31 3671-3681.
17. "Synthesis and Characterization of a Series of (dien)Pt(II) Derivatives as Potential Nucleic Acid Conformation and Structure Probes." John-Stephen A. Taylor*, Rushdi Alul and Martin B. Cleaver, Inorg. Chem. 1992 31, 3636-3646.
18. "Photochemically and Photoenzymatically Cleavable DNA" Sourena Nadji, Cheng-I. Wang and John-Stephen Taylor*, J. Am. Chem. Soc.. 1992 114, 9266-9269.
19. "PCNA-Induced DNA Synthesis Past Cis-Syn and Trans-Syn-I Thymine Dimers by Polymerase in vitro" Christine L. O'Day, Peter M. J. Burgers and John-Stephen Taylor*, Nucl. Acids Res. 1992 20, 5403-5406.
1993
20. "In Vivo Evidence that UV-Induced CT Mutations at Dipyrimidine Sites Could Result from the Replicative Bypass of Cis-Syn Cyclobutane Dimers or Their Deamination Products", John-Stephen Taylor* and Nan Jiang, Biochemistry, 1993, 32, 472-481.
21. "Further characterization of eukaryotic nucleotide excision nuclease: Removal of thymine dimer and psoralen monoadduct by HeLa cell free extract and of thymine dimer by xenopus laevis oocytes", Daniel L. Svoboda, John-Stephen Taylor, John E. Hearst, and Aziz Sancar*, J. Biol. Chem., 1993, 268, 1931-1936
22. "Preparation and Characterization of a Set of Oligonucleotide 49-mers Containing Site-Specific Cis-Syn, Trans-Syn-I, (6-4) and Dewar Photoproducts of TpT Sites." Colin Smith and John-Stephen Taylor*, J. Biol. Chem., 1993, 268, 11143-11151.
23. "Effect of Sequence, Adduct Type, and Opposing Lesions on the Binding and Repair of UV Photodamage by DNA Photolyase and (A)BC Excinuclease", Daniel L. Svoboda, Colin A. Smith, John-Stephen A. Taylor, and Aziz Sancar*, J. Biol. Chem., 1993, 268, 10694-10700.
24. "The Trans-Syn-I Thymine Dimer Bends DNA by 22o and Unwinds DNA by 15o", Cheng-I. Wang and John-Stephen Taylor*, Chem. Res. Toxicol., 1993, 6, 519-523.
25. "Identification and Structure Determination of a Third Cyclobutane Dimer of Thymidylyl-(3'5')-Thymidine: The Trans-Syn-II Product" Jeffrey Kao, Sourena Nadji, John-Stephen Taylor*, Chemical Research in Toxicology, 1993, 6, 561-567.
26. "DNA Photolyase Repairs the Trans-Syn Cyclobutane Thymine Dimer" Sang-Tae Kim, Khushbeer Malhotra, Colin A. Smith, John-Stephen Taylor and Aziz Sancar*, Biochemistry, 1993, 32, 7065-7068.
27. "Comparative analysis of binding of human damaged DNA-binding protein (XPE) and Escherichia coli UvrA Damage recognition protein (uvrA) to the major UV photoproducts: T[c,s]T, T[t,s]T, T[6-4]T, and T[Dewar]T" Joyce T. Reardon, Anne F. Nichols, Scott Keeney, Colin A. Smith, John-Stephen Taylor, Stuart Linn, and Aziz Sancar*, J. Biol. Chem. 1993, 268, 21301-21308.
1994
28. "Unraveling the Molecular Pathway from Sunlight to Skin Cancer", John-Stephen Taylor*, Accounts Chem. Res., 1994, 27, 76-82.
29. “Characterization of (6-4) photoproduct DNA photolyase”, Kim, S.T., Malhotra, K.; Smith, Colin A.; Taylor, John-Stephen; Sancar*, Aziz, J. Biol. Chem., 1994, 269, 8535-8540.
30. “Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template”, Brian A. Donahue, Shang Yin, John-Stephen Taylor, Daniel Reines, and Phillip C. Hanawalt*, Proc. Natl. Acad. Sci. 1994 91, 8502-8506
31. “Eliciting a DNA Photoproduct-Specific Antibody with a Dinucleotide Photoproduct Antigen”, Xiaodong Zhao and John-Stephen Taylor*, J. Am. Chem. Soc., 1994 116 8870-8876.
32. “A new ATP-independent DNA endonuclease from Schizosaccharomyces pombe that recognizes cyclobutane pyrimidine dimers and 6-4 photoproducts.” Bowman K K; Sidik K; Smith C A; Taylor J S; Doetsch* P W; Freyer, G A, Nucleic Acids Res, 1994 22, 3026-32
33. “DNA, Sunlight annd Skin Cancer”, John-Stephen Taylor*, Int. Union Pure Appl. Chem., 1995 67,183-190.
1995
34. “Preparation and Characterization of a Deoxyoligonucleotide 49-mer Containing a Site-specific Thymidylyl-(3'-5')-deoxyadenosine Photoproduct”, Xiaodong Zhao and John-Stephen A. Taylor*, Biochemistry, 1995 34, 1386-1392.
35. “T4 endonuclease V protects the DNA strand opposite a thymine dimer from cleavage by the footprinting reagens DNase I and 1,10-phenanthroline.” Latham, K. A., Taylor, J-S., Lloyd*, RS. J. Biol. Chem. 1995, 270, 3765-3771.
36. “Design and synthesis of a versatile photocleavable DNA building block. Application to phototriggered hybridization.” Ordoukhanian, P; Taylor*, J-S., J. Am. Chem. Soc. 1995 117, 9571-2.
1996
37. "Mutation Spectra of M13 Vectors Containing Site-Specific Cis-Syn, Trans-Syn-I, Trans-Syn-II, (6-4) and Dewar Pyrimidinone Photoproducts of Thymidylyl-(3'5')-Thymidine in Escherichia coli Under SOS Conditions." Colin A. Smith, Mu Wang, Linda Che, Nan Jiang, and John-Stephen Taylor*, Biochemistry, 1996, 35, 4146-4154.
38. "Remarkable Photoreversal of a Thio Analog of the Dewar Valence Isomer of the (6-4) Photoproduct of DNA to the Parent Nucleotides. Jianquan Liu and John-Stephen Taylor*, J. Am. Chem. Soc. 1996, 118, 3287-3288.
39. “Structure of d(TpA)*, the major photoproduct of thymidylyl-(3’-5’)-deoxyadenosine. Xiaodong Zhao, Sourena Nadji, Jeffrey Kao, John-Stephen Taylor*, Nucl. Acids Res., 1996, 24, 1554-1560.
40. “Mutation spectra of TA*, the major photoproduct of thymidylyl(3'-5')-adenosine, in E. coli under SOS induction” Xiaodong Zhao and John-Stephen Taylor*, Nucleic Acids Res. 1996, 24, 1561-1565.
41. "Purification and partial characterization of (6-4) photoproduct DNA photolyase from Xenopus laevis." Kim, S.-T., Malhotra, K., Taylor, J.-S., and Sancar, A. 1996 Photochem. Photobiol. 63, 292-295.
1997
42. "Ultraviolet irradiation produces novel endonuclease III-sensitive cytosine photoproducts at dipyrimidine sites" J. Jen, D. L. Mitchell, R. P. Cunningham, C. A. Smith, J-S Taylor, and J. E. Cleaver*, Photochem. Photobiol. 1997 65 323-329.
43. "Solid phase supported thymine dimers for the construction of dimer-containing DNA by combined chemical and enzymatic synthesis. A potentially general method for the efficient incorporation of modified nucleotides into DNA." Phillip Ordoukhanian, John-Stephen Taylor*,1997, Nucl. Acids Res. 25, 3783-3786.
44. Reaction mechanism of (6-4) photolyase. Xiaodong Zhao, Jianquan Liu, David S. Hsu, Shaying Zhao, John-Stephen Taylor, and Aziz Sancar*. 1997, J. Biol. Chem., 272, 32580-32590.
45. Structural determination of isomeric hexadeoxynucleotide photoproducts by fast atom bombardment and tandem mass spectrometry. David Vollmer, Xiaodong Zhao, John-Stephen Taylor, and Michael L. Gross*, 1997, International Journal of Mass Spectrometry and Ion Processes, 165/166, 487-496.
1998
46. Bypass of a Site-specific cis-syn thymine dimer in an SV40 vector during in vitro replication by HeLa and XPV cell free extracts. Ingrid Ensch-Simon, Peter M. J. Burgers, and John-Stephen Taylor,* 1998 Biochemistry, 37, 8218-8226.
47. Template-directed photoligation of oligonucleotides via 4-thiothymidine. Jianquan Liu and John-Stephen Taylor*, 1998 Nucleic Acids Res., 26, 3300-3304..
48. "The ability of a variety of polymerases to synthesize past site-specific cis-syn, trans-syn-II, (6-4), and Dewar photoproducts of thymidylyl-(3'-5')-thymidine." Colin A. Smith, Jared Baeten, and John‑Stephen Taylor*. 1998 J. Biol. Chem., 273, 21933-21940.
49. Thermodynamic and base-pairing studies of matched and mismatched DNA dodecamer duplexes containing cis-syn, (6-4) and Dewar photoproducts of TT. Yeuqing Jing, Jeffrey F.-L. Kao, and John-Stephen Taylor*, 1998 Nucl. Acids. Res., 26, 3845-3853.
50. Solution-state structure of a DNA dodecamer duplex containing a cis-syn thymine cyclobutane dimer, the major UV photoproduct of DNA. K. McAteer, Y. Jing, J. Kao, J-S. Taylor, M. A. Kennedy*, 1998 J. Mol. Biol., 282, 1013-1032
51. Characterization of a novel cis-syn and trans-syn-II pyrimidine dimer glycosylase/AP lyase from a eukaryotic algal virus, Paramecium bursaria chlorella virus-1. McCullough A.K., Romberg M.T., Nyaga S., Wei Y., Wood T. G., Taylor J.-S., Van Etten J. L., Dodson M. L., Lloyd R. S.*, 1998 J. Biol. Chem. 273, 13136-42
52. Structure and fragmentation mechanisms of isomeric T-rich oligodeoxynucleotides: a comparison of four tandem mass spectrometric methods. Wang, Z., Wan, K. X., Ramanathan, R., Taylor, J. S., and Gross*, M. L. 1998. J. Am. Soc. Mass Spectrom. 9, 683-691.
1999
53. Differentiation of Isomeric Photomodified Oligodeoxynucleotides by fragmentation of Ions Produced by Matrix-assisted Laser Desorption Ionization and Electrospray Ionization. Yinsheng Wang, John-Stephen Taylor, and Michael L. Gross*. 1999 J. Am. Soc. Mass Spectrom. 10, 329-338.
54. Substrate specificity of ultraviolet DNA endonuclease (UVDE/Uve1p) from Schizosaccharomyces pombe.Avery, A. M., Kaur, B., Taylor, J.-S., Mello, J. A., Essigmann, J. M., Doetsch*, P. W. 1999 Nucleic Acids Res. 27, 2256-2264.
55. Preparation and Characterization of DNA Containing a Site-Specific Non-Adjacent Cyclobutane Thymine Dimer of theType Implicated in UV-Induced -1 Frameshift Mutagenesis. Jody Lingbeck, John-Stephen Taylor, 1999 Biochemistry, 38, 13717-24.
56. Nuclease P1 Digestion Combined with Tandem Mass Spectrometry for the Structure Determination of the DNA Photoproducts. Yinsheng Wang, John-Stephen Taylor, and Michael L. Gross, 1999 Chem. Res. Toxicol., 12, 1077-1082.
57. Interactions of Human Nucleotide Excision Repair Protein XPA with DNA and RPA70DC327: Chemical Shift Mapping and 15N NMR Relaxation Studies. Buchko, G. W., Daughdrill, G. W., de Lorimier, R., Sudha Rao, K. B., Isern, N. G., Lingbeck, J. M., Taylor, J.-S., Wold, M. S., Gochin, M., Spicer, L. D., Lowry, D. F., and Kennedy, M. A. 1999 Biochemistry 38, 15116-15128.
58. A Caged Ligatable DNA Strand Break. Kaijiang Zhang and John-Stephen Taylor, 1999 J. Am. Chem. Soc. 121, 11579-11580.
2000
59. "PhrA, the major photoreactivating factor in the cyanobacterium Synechocystis sp. strain PCC 6803 codes for a cyclobutane-pyrimidine-dimer-specific DNA photolyase" Ng WO, Zentella R, Wang Y, Taylor JS, Pakrasi* HB., 2000 Arch Microbiol 173, 412-7.
60. Replication Protein A Interactions with DNA. III. Molecular Basis of Recognition of Damaged DNA. Lao, Y., Gomes, X. V., Ren, Y., Taylor, J.-S., and Wold, M. S. 2000 Biochemistry 39, 850-859.
61. Caged Single and Double Strand Breaks. Ordoukhanian, P., and Taylor, J.-S. 2000 Bioconjugate Chem. 11, 94-103.
62. Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis, Tang, M., Pham, P., Shen, X., Taylor, J.-S., O'Donnell, M., Woodgate, R. & Goodman*, M. F. 2000 Nature 404, 1014 - 1018.
63. Quantum Chemical Study of the Electron-Transfer-Catalyzed Splitting of Oxetane and Azetidine Intermediates Proposed in the Photoenzymatic Repair of (6-4) Photoproducts of DNA. Yinsheng Wang, Peter P. Gaspar, and John-Stephen Taylor* 2000 J. Am. Chem. Soc., 5510-5519.
64. Nucleic Acid Triggered Catalytic Drug Release. Ma, Z., and Taylor, J.-S. 2000 Proc. Natl. Acad. Sci. USA, 97, 11159-11163.
65. Specificity of DNA lesion bypass by the yeast DNA polymerase eta, Yuan, Fenghua; Zhang, Yanbin; Rajpal, Deepak K.; Wu, Xiaohua; Guo, Dongyu; Wang, Mu; Taylor, John-Stephen; Wang*, Zhigang. 2000 J. Biol. Chem., 275, 8233-8239.
66. Pyrene Nucleotide as a Mechanistic Probe: Evidence for a Transient Abasic-Like Site in the Bypass of DNA Photoproducts by T7 DNA Polymerase. Liping Sun, Mu Wang, Eric Kool, John-Stephen Taylor*, 2000 Biochemistry 39, 14603-10.
67. Error-free and error-prone lesion bypass by human DNA polymerase kappa in vitro. Nucleic Acids Res 2000 28, 4138-46, Zhang Y, Yuan F, Wu X, Wang M, Rechkoblit O, Taylor JS, Geacintov NE, Wang Z.
68. "Error-prone lesion bypass by human DNA polymerase eta" Zhang Y, Yuan F, Wu X, Rechkoblit O, Taylor JS, Geacintov NE, Wang Z 2000 Nucleic Acids Res. 28, 4717-24
2001
69. Phototriggered Formation and Repair of DNA Containing a Site-Specific Single Strand Break of the Type Produced by Ionizing Radiation or AP Lyase Activity, Kaijiang Zhang, John-Stephen Taylor*, Biochemistry 2001 40, 153-159.
70. A Method for Quantification from Composite Spectra: Application to the Determination of Isomeric DNA Photoproducts by Tandem Mass Spectrometry, Yinsheng Wang, Don L. Rempel, John-Stephen Taylor, and Michael L. Gross* Analytical Chemistry 2001 Anal. Chem. 73, 185-91.
71. The Reaction Mechanism of DNA Glycosylase/AP Lyases at Abasic Sites, Amanda K. McCullough, Ana Sanchez, M. L. Dodson, Praveen Marapaka, John-Stephen Taylor and R. Stephen Lloyd*, 2001 Biochemistry 40, 561-8
72. "Response of human DNA polymerase iota to DNA lesions" Zhang, Y., Yuan, F., Wu, X., Taylor, J.S., Wang*, Z. 2001 Nucleic Acids Res. 29, 928-35.
73. "Translesion synthesis by yeast DNA polymerase zeta from templates containing lesions of ultraviolet radiation and acetylaminofluoreneGuo, D., Wu, X., Rajpal, D. K., Taylor, J. S., and Wang*, Z. 2001 Nucleic Acids Res. 29, 2875-83.
74. "Fragmentation of electrospray-produced oligodeoxynucleotide ions adducted to metal ions" Wang, Y., Taylor, J. S., and Gross*, M. L. 2001 J. Am. Soc Mass Spectrom. 12, 550-6.
75. "Isolation and mass spectrometric characterization of dimeric adenine photoproducts in oligodeoxynucleotides" Wang, Y., Taylor, J. S., and Gross*, M. L. 2001, Chem. Res. Toxicol. 14, 738-45.
76. Fragmentation of photomodified oligodeoxynucleotides adducted with metal ions in an electrospray-ionization ion-trap mass spectrometer. Wang, Y., Taylor, J.S., and Gross, M.L. 2001 J Am Soc Mass Spectrom 12, 1174-1179.
77. "Use of a Combined Enzymatic Digestion/ESI Mass Spectrometry Assay to Study the Effect of TATA-Binding Protein on Photoproduct Formation in a TATA Box" Wang, Y., Gross, M. L., and Taylor*, J.-S. 2001 Biochemistry 40, 11785-93.
78. "Nucleic Acid Triggered Catalytic Drug and Probe Release: A New Concept for the Design of Chemotherapeutic and Diagnostic Agents" Ma, Z., Taylor*, J.-S. 2001 Bioorg. Med. Chem. 9, 2501-10.
79. "Determination of photomodified oligodeoxynucleotides by exonuclease digestion, matrix-assisted laser desorption/ionization and post-source decay mass spectrometry" Zhang, L. K., Ren, Y., Rempel, D., Taylor, J. S. & Gross*, M. L. 2001 J Am Soc Mass Spectrom 12, 1127-35.
2002
80. "Lesion Bypass Activities of Human DNA Polymerase m" Y. Zhang, X. Wu, D. Guo, O. Rechkoblit, J.S. Taylor, N.E. Geacintov and Z. Wang* 2002 J. Biol. Chem. 277 44582-44587.
81. "Crystal Structure of a DNA Decamer Containing a Thymine-Dimer" Park, H. Zhang, K., Ren, Y., Nadji, S., Sinha, N., Taylor, J. S. and Kang, C. H.* 2002 Proc. Natl. Acad. 99, 15965-15970.
82. "New structural and mechanistic insight into the A-rule and the instructional and non-instructional behavior of DNA photoproducts and other lesions" Taylor*, J.S., 2002 Mut. Res. 510, 55-70.
2003
83. "PNA-based RNA-triggered Drug Releasing System" Ma, Z., Taylor*, J.S. 2003 Bioconj. Chem. 14, 679.
84. “Yeast Pol h Holds a Cis-Syn Thymine Dimer Loosely in the Active Site During Elongation Opposite the 3'-T of the Dimer, but Tightly Opposite the 5'-T. Liping Sun‡, Kaijiang Zhang, Lilly Zhou, Paul Hohler, Eric T. Kool, X., F. Yuan, Zhigang Wang, John-Stephen Taylor*, 2003 Biochemistry, 42, 9431-7.
85. “General Strategy for the Preparation of Membrane Permeable Fluorogenic Peptide Ester Conjugates for in vivo Studies of Ester Prodrug Stability”, Xiaoxu Li, John-Stephen Taylor*, 2003 Bioorg. Med. Chem., 12 pp 545-552.
2004
86. “DNA-Thumb Interactions and Processivity of T7 DNA Polymerase in Comparison to Yeast Polymerase h.Vincent J. Cannistraro and John-Stephen Taylor* 2004 J. Biol. Chem. 18288-18295.
87. Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S. and Ellenberger*, T., Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. 2004 Nat Struct Mol Biol. 784-90.
88. Hwang, H., Taylor*, J. S., Role of base stacking and sequence context in the inhibition of yeast DNA polymerase h by pyrene nucleotide. 2004 Biochemistry, 43, 14612-23.
89. Cai, J., Li, X., Yue, X., Taylor*, J. S., Nucleic Acid Triggered Fluorescent Probe Activation by the Staudinger Reaction. 2004 J. Am. Chem. Soc., 126,16324-5.
2005
90. Hwang, H., Taylor*, J. S. Evidence for Watson-Crick and not Hoogsteen or Wobble base pairing in the selection of nucleotides for insertion opposite pyrimidines and a thymine dimer by yeast DNA pol eta 2005 Biochemistry, 44, 4850-60.
91. Cai, J., Li, X., Taylor*, J. S., Improved Nucleic Acid Triggered Probe Activation Through the Use of a 5-Thiomethyluracil Peptide Nucleic Acid (PNA) Building Block, 2005 Org. Letters, 7, 751-4
92. Sun, X., Fang, H., Li, X., Rossin, R., Welch, M. J., Taylor*, J. S., MicroPET imaging of MCF-7 tumor in mice via unr mRNA-targeted peptide nucleic acids, 2005 Bioconjug. Chem.16, 294-305
93. Turner, J. L., Becker, M. L., Li, X., Taylor, J. S., Wooley, K. L.*, PNA Directed Solution and Surface Assembly of Shell Crosslinked (SCK) Nanoparticle Conjugates, 2005, Soft Matter, 1, 69-78.
94. Huafeng Fang, Xuan Yue, Xiaoxu Li, and John-Stephen Taylor* Identification and characterization of high affinity antisense PNAs for the human unr (upstream of N-ras) mRNA which is uniquely overexpressed in MCF-7 breast cancer cells 2005 Nucleic Acids Res. 33 6700-6711.
2006
95. Bdour, H. M., Kao, J. L., and Taylor, J. S. Synthesis and characterization of a [3-(15)N]-labeled cis-syn thymine dimer-containing DNA duplex 2006 J. Org. Chem. 71, 1640-6.
96. Vu, B., Cannistraro, V.J., Sun, L. and Taylor*, J.S. DNA synthesis past a 5-methylC-containing cis-syn-cyclobutane pyrimidine dimer by yeast pol eta is highly nonmutagenic. Biochemistry, 2006 45, 9327-35.
2007
97. Fiala, K.A., Brown, J.A., Ling, H., Kshetry, A.K., Zhang, J., Taylor, J.S., Yang, W. and Suo*, Z. Mechanism of Template-independent Nucleotide Incorporation Catalyzed by a Template-dependent DNA Polymerase. J Mol Biol, 2007 365, 590-602.
98. Cannistraro, V.J. and Taylor, J.S. Ability of polymerase eta and T7 DNA polymerase to bypass bulge structures. J Biol Chem, 2007 282, 11188-96.
2008
99. Li, X., Higashikubo, R. & Taylor, J. S. Use of Multiple Carboxylates to Increase Intracellular Retention of Fluorescent Probes Following Release From Cell Penetrating Fluorogenic Conjugates. 2008 Bioconjug Chem. 50-56.
100. Agarwal, M., Pandita, S., Hunt, C. R., Gupta, A., Yue, X., Khan, S., Pandita, R. K., Pratt, D., Shay, J. W., Taylor, J. S., Pandita, T. J., Inhibition of Telomerase Activity Enhances Hyperthermia-Mediated Radiosensitization, Cancer Res. 2008, 3370-8.
101. Su, D.; Kao, J.; Gross, M.; Taylor, J. S. Structure Determination of an Inter-strand-type cis-anti Cyclobutane Thymine Dimer Produced in High Yield by UVB Light in an Oligodeoxynucleotide at Acidic pH, J. Am. Chem. Soc. 2008, 11328-37.
102. Zhang, K.; Fang, H.; Chen, Z.; Taylor, J.-S.; Wooley*, K. Shape effects of nanoparticles conjugated with cell-penetrating peptides (HIV Tat PTD) on CHO cell uptake. Bioconjug. Chem. 2008 1880-1887.
103. Oquare, B. Y. and Taylor,* J.-S. Synthesis of PNA FRET Probes via an Orthogonally Protected Building Block for Post-Synthetic Labeling of PNAs at the 5-Position of U. Bioconjug. Chem. 2008 2196–2204.
104. Fang, H., Taylor* J.-S., Serial analysis of mutation spectra (SAMS). A new approach for the determination of mutation spectra of site-specific DNA damage and their sequence dependence. Nucleic Acids Res. 2008 6004-12.
105. Asgatay, S.; Petermann, C.; Harakat, D.; Guillaume, D.; Taylor, J. S.; Clivio, P. Evidence that the (6-4) photolyase mechanism can proceed through an oxetane intermediate. J Am Chem Soc 2008, 130, 12618-12619.
2009
106. Sun, G.; Fang, H.; Cheng, C.; Lu, P.; Zhang, K.; Walker, A. V.; Taylor, J. S.; Wooley, K. L. Benzaldehyde-functionalized polymer vesicles. ACS Nano 2009, 3, 673-681.109.
107. Zhang K, Fang H, Wang Z, Taylor J-SA, & Wooley KL Cationic shell-crosslinked knedel-like nanoparticles for highly efficient gene and oligonucleotide transfection of mammalian cells 2009 Biomaterials 30, 968-77.
108. Fang, H., Zhang, K., Shen, G., Wooley, K.L. and Taylor, J.S. Cationic Shell-crosslinked Knedel-like (cSCK) Nanoparticles for Highly Efficient PNA Delivery. 2009 Mol. Pharm., 615-626.
109. Wang, R. E.; Kao, J. L.-F.; Hilliard, C. A.; Pandita, R. K.; Roti Roti, J. L.; Hunt, C. R.; Taylor, J.-S. Inhibition of Heat Shock Induction of Heat Shock Protein 70 and Enhancement of Heat Shock Protein 27 Phosphorylation by Quercetin Derivatives J. Med. Chem. 2009, 1912-1921.107.
110. Su DG, Fang H, Gross ML, Taylor JS. Photocrosslinking of human telomeric G-quadruplex loops by anti cyclobutane thymine dimer formation. Proc. Natl. Acad. Sci. U. S. A. 2009 106 12861-6. PMID: 19628696. PMCID: PMC2722299 [Available on 2010/02/04].
111. Zhang, K., Fang, H., Shen, G., Taylor, J. S., and Wooley, K. L. Well-defined cationic shell crosslinked nanoparticles for efficient delivery of DNA or peptide nucleic acids. Proc Am Thorac Soc 2009 6, 450-7. PMID: 19687218.
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112. Shen G, Fang H, Song Y, Bielska AA, Wang Z, Taylor JS., Phospholipid Conjugate for Intracellular Delivery of Peptide Nucleic Acids., Bioconjug. Chem. 2009, 1729-36. PMID: 19678628.
113. Cannistraro VJ, Taylor JS., Acceleration of 5-Methylcytosine Deamination in Cyclobutane Dimers by G and Its Implications for UV-Induced C-to-T Mutation Hotspots. J. Mol. Biol.2009, 1145-57. PMID: 19631218.
114. Kranz RG, Richard-Fogal C, Taylor JS, Frawley ER., Cytochrome c biogenesis: mechanisms for covalent modifications and trafficking of heme and for heme-iron redox control. Microbiol Mol Biol Rev. 2009 73, 510-28.
115. Zhang K, Fang H, Li Z, Ma J, Hohlbauch, SV, Taylor, JSA, Wooley KL Composite soft-matter nanoscale objects: Nanocylinder-templated assembly of nanospheres Soft Matter 20095, 3585-3589.
2010
116. Ke Zhang, Huafeng Fang, Zhenghui Wang, Zhou Li, John-Stephen A. Taylor,* and Karen L. Wooley,* Structure-Activity Relationships of Cationic Shell-crosslinked Knedel-like Nanoparticles: Shell Composition and Transfection Efficiency/Cytotoxicity, Biomaterials, 2010, 1805-13. PMID: 19687218 PMCID: PMC2731805 Free PMC Article
117. Kenjiro Asagoshia, Yuan Liua, Aya Masaokaa, Li Lanb, Rajendra Prasada, Julie K. Hortona, Ashley R. Brown, Xiao-hong Wang, Hussam M. Bdour, Robert W. Sobol, John-Stephen Taylor, Akira Yasui, and Samuel H. Wilson "DNA polymerase b-dependent long patch base excision repair of UVinduced pyrimidine photoproducts in nucleotide excision repair deficient cells" DNA Repair 2010 9, 109-19.
118. Dian Su, John-Stephen Taylor, Michael Gross. HPLC and Mass Spectrometric Characterization of a New Class of DNA Photoproducts Involving Reaction of Adjoining mC and A, Chem. Res. Toxicol. 2010 23, 474-9. PMCID: PMC2838963 [Available on 2011/3/15]
119. Huafeng Fang, Yuefei Shen, John-Stephen A. Taylor, Native mRNA antisense-accessible sites library for the selection of highly effective antisense oligonucleotides, PNAs, and siRNAs" RNA 2010, 1429-35.
120. Vincent Cannistraro, John-Stephen Taylor, Methyl CpG binding protein 2 (MECP2) enhances photodimer formation at methyl-CpG sites but suppresses dimer deamination, Nucl. Acids Res. 2010, 38:6943-55 PMID: 20601406. Free article.
121. Brown, J. A.; Zhang, L.; Sherrer, S. M.; Taylor, J. S.; Burgers, P. M.; Suo, Z. Pre-Steady-State Kinetic Analysis of Truncated and Full-Length Saccharomyces cerevisiae DNA Polymerase Eta. J Nucleic Acids 2010 in press. PMCID: PMC2925389. Free PMC article. http://www.hindawi.com/journals/jna/2010/871939/
122. Brown JA, Pack LR, Sherrer SM, Kshetry AK, Newmister SA, Fowler JD, Taylor JS, Suo Z.Identification of critical residues for the tight binding of both correct and incorrect nucleotides to human DNA polymerase λ. 2010 J Mol Biol. 2010 403:505-15.
2011
123. Song, Q., Cannistraro, V. J., and Taylor, J. S. Rotational position of a 5-methylcytosine-containing cyclobutane pyrimidine dimer in a nucleosome greatly affects its deamination rate. J Biol Chem. 2011, 6329, PMID: 21160086. Free Article
124. Identification of Quercetin Binding Proteins In Vivo with a Biotinylated Quercetin Photoaffinity Reagent, Rongsheng E.Wang, Clayton R. Hunt, Jiawei Chen, John-Stephen Taylor, Bioorg. Biomed. Chem. 2011 4710-20.
125. Inhibition of Heat Shock Transcription Factor Binding and Heat Shock Protein 70 Induction in vivo by a Linear Polyamide Binding in an Unusual 1:1 Mode, Rongsheng E. Wang, Raj K.
2012
126. Preparation of site-specific T=mCG cis-syn cyclobutane dimer-containing template and its error-free bypass by yeast and human polymerase η. Song Q, Sherrer SM, Suo Z, Taylor JS. J Biol Chem. 2012 8021-8.
127. Dual peptide nucleic acid- and peptide-functionalized shell cross-linked nanoparticles designed to target mRNA toward the diagnosis and treatment of acute lung injury. Shrestha R, Shen Y, Pollack KA, Taylor JS, Wooley* KL. 2012 Bioconjug Chem. 2012 574-85.
128. Imaging mRNA Expression in Live Cells via PNA·DNA Strand Displacement-Activated Probes, ZhenghuiWang, Ke Zhang, Karen L.Wooley, and John-Stephen Taylor*, J. Nucl. Acids2012 2012:962652. doi: 10.1155/2012/962652.
2013
130. Efficient protection and transfection of siRNA by cationic shell-crosslinked knedel-like nanoparticles (cSCKs) Yuefei Shen, Huafeng Fang, Ke Zhang, Ritu Shrestha, Karen L.Wooley, and John-Stephen A. Taylor, Nucleic Acid Therapeutics 2013, 23, 95-108 DOI: 10.1089/nat.2012.0390.
131. Imaging mRNA expression levels in living cells with PNA∙DNA binary FRET probes delivered by cationic shell-crosslinked nanoparticles Zhenghui Wang, Ke Zhang, Jillian Smith, Sharon Bloch, Samuel Achilefu, Karen L. Wooley, John-Stephen Taylor* Org. Biomol. Chem. 2013, 2013, 11, 3159-67 DOI: 10.1039/c3ob26923j.
132. A high-throughput and quantitative method to assess the mutagenic potential of translesion DNA synthesis. Taggart, D. J., Camerlengo, T. L., Harrison, J. K., Sherrer, S. M., Kshetry, A. K., Taylor, J. S., Huang, K., and Suo*, Z. (2013) Nucleic Acids Research 2013 41, e96.
133. Nucleic Acid-directed Self-assembly of Multifunctional Gold Nanoparticle Imaging Agents Ziyan Zhang, Yongjian Liu, Chad Jarreau, Michael J. Welch, and John-Stephen A. Taylor*, Biomaterials Science. 2013, 1055
134. Antisense peptide nucleic acidfunctionalized cationic nanocomplex for in vivo mRNA detection. Yuefei Shen, Ritu Shrestha, Aida Ibricevic, Sean P. Gunsten, Michael J. Welch, Karen L. Wooley, Steven L. Brody, John-Stephen A. Taylor and Yongjian Liu, Interface Focus 2013, in press.
135. Roles of Free Radicals in Type 1 Phototherapeutic Agents: Aromatic Amines, Sulfenamides, and Sulfenates .Lin*, T. S., Rajagopalan, R., Shen, Y., Park, S., Poreddy, A. R., Asmelash, B., Karwa, A., and Taylor, J. S. J Phys Chem A. 2013, in press.
136. A Simple and Efficient Synthesis of an Acid-labile Polyphosphoramidate by Organobase-catalyzed Ring-Opening Polymerization and Transformation to Polyphosphoester Ionomers by Acid Treatment, Zhang, Shiyi; Wang, Hai; Shen, YueFei; Zhang, Fuwu; Seetho, Kellie; Zou, Jiong; Taylor, John-Stephen; Dove, Andrew; Wooley*, Karen, Macromolecules 2013 in press.
137. Polyphosphoester-based cationic nanoparticles serendipitously release integral biologically-active components to serve as novel degradable inducible nitric oxide synthase inhibitors. Shen Y, Zhang S, Zhang F, Loftis A, Pavía-Sanders A, Zou J, Fan J, Taylor JS, Wooley KL. Adv Mater. 2013, 25, 5609-14.
2014
138. Effect of sequence and metal ions on UVB-induced anti cyclobutane pyrimidine dimer formation in human telomeric DNA sequences. Smith JE, Lu C, Taylor* JS. Nucleic Acids Res. 2014 Apr;42(8):5007-19. doi: 10.1093/nar/gku163. Epub 2014 Mar 4. PMID: 24598261.
139. Synergistic Modulation of Cyclobutane Pyrimidine Dimer Photoproduct Formation and Deamination at a TmCG Site Over a Full Helical DNA Turn in a Nucleosome Core Particle, Song, Q., Cannistraro, V. Taylor,* J.-S.Nucl. Acids Res. 2014 13122-33. PMID: 25389265. PMCID: PMC4245940.
2015
140. Biomolecules. The dark side of sunlight and melanoma. JS Taylor* Science, 2015, 824. PMID: 25700500.
141. Design, synthesis, and characterization of nucleosomes containing site-specific DNA damage, JS Taylor*, DNA Repair, 2015 59-67. PMID: 26493358
142. Rapid deamination of cyclobutane pyrimidine dimer photoproducts at TCG sites in a translationally and rotationally positioned nucleosome in vivo. Vincent J. Cannistraro, Santhi Pondugula, Qian Song, and John-Stephen Taylor*, J. Biol. Chem., 2015, 26597-609.
2017
143. Modulation of cyclobutane thymine photodimer formation in T11-tracts in rotationally phased nucleosome core particles and DNA minicircles. Kesai Wang and Taylor,* J.S., Nucleic Acids Res. 2017 7031-7041. PMID: 28525579 PMCID: PMC5499554 doi: 10.1093/nar/gkx427.
2018
144. Evidence for Reverse Hoogsteen Hairpin Intermediates in the Photocrosslinking of Human Telomeric DNA Sequences, Lu, Chen; Smith, Jillian; Taylor,* J.S.Photochem. Photobiol. 2018 685-697, PMID: 29418001 PMCID: PMC6031464 DOI: 10.1111/php.12898.
2019
145. Photocrosslinking of G-Quadruplex Forming Sequences found in Human Promoters. Smith-Carpenter JE, Taylor JS. Photochem Photobiol. 2019 doi: 10.1111/php.12991. PMID: 30084501.
2021
146. The effect of flanking bases on direct and triplet sensitized cyclobutane pyrimidine dimer formation in DNA depends on the dipyrimidine, wavelength and the photosensitizer. Lu C, Gutierrez-Bayona NE, Taylor JS. Nucleic Acids Res. 2021 May 7;49(8):4266-4280. doi: 10.1093/nar/gkab214. PMID: 33849058
147. Ability of the Putative Decomposition Products of 2,3-dioxetanes of Indoles to Photosensitize Cyclobutane Pyrimidine Dimer (CPD) Formation and its Implications for the "Dark" (Chemisensitized) Pathway to CPDs in Melanocytes. Wang Y, Cacchillo EM, Niedzwiedzki DM, Taylor JS. Photochem Photobiol. 2021 Sep 24. doi: 10.1111/php.13529. PMID: 34558720.
2022
148. Adjacent and Nonadjacent Dipyrimidine Photoproducts as Intrinsic Probes of DNA Secondary and Tertiary Structure. Taylor JS. Photochem Photobiol. 2022 PMID: 35980594 DOI: 10.1111/php.13694