Name
Yasuo Tabei
tabei (at)cb.k.u-tokyo.ac.jp
twitter id
tb_yasu
Affiliation
Research Scientist at
Computational Biology Research Center
National Institute of Advanced Industrial Science and Technology Japan
Employment
2009- JSPS Research Fellow (PD)
2008-2009 JSPS Research Fellow (DC2)
2006-2008 AIST Research Staff
Bioinformatics
Structural alignment algorithm for RNA sequences (Wikipedia)
Machine Learning (Wikipedia)
Conditional Random Fields(CRFs)
Boosting
Data Mining
Frequent Pattern Mining
Yasuo Tabei and Kiyoshi Asai: A local multiple alignment method for detection of non-coding RNA sequences, Bioinformatics, 25(12), 1498-1505 (2009).Link
Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai and Totai Mituyama: Software.ncrna.org: web servers for analyses of RNA sequences, Nucl. Acids Res., 36, W75-W78 (2008).Link
Yasuo Tabei, Hisanori Kiryu, Taishin Kin and Kiyoshi Asai: A fast structural multiple alignment method for long RNA sequences, BMC Bioinformatics, 9(33) (2008).Link
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, and Kiyoshi Asai: Murlet: A practical multiple alignment tool for structural RNA sequences, Bioinformatics, 23(13), 1588-1598 (2007).Link
Yasuo Tabei, Koji Tsuda, Taishin Kin, and Kiyoshi Asai: SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments, Bioinformatics, 22(14), 1723-1729 (2006).Link
Yasuo Tabei and Kiyoshi Asai, A local multiple alignment method for detection of non-coding RNA sequences, RNA meeting 2009, 27--29 July, Niigata, Japan, 2009.
Yasuo Tabei, Daisuke Okanohara, Koji Tsuda, Mining Frequent Patterns from Linear Graphs, The Fourth International Workshop on Data-mining Statistical Science(DMSS2009), 7--8 July, Kyoto, Japan, 2009.
Mining Structured Patterns from Linear Graphs, IBM Tokyo Research Laboratory, Hosted by Dr. Hisashi Kashima, January 7, 2009, (Wed.)
A fast structural multiple alignment method for long RNA sequeces, Max Planck Institute for Informatics, Hosted by Dr. Hiroto Saigo, September 11, 2008 (Thr.) pdf
A local alignment model for non-coding RNA sequences and its application of local multiple alignment, Computational Biology Research Center (CBRC), July 11, 2008 (Fri.) pdf
SCARNA(fast and accurate structural pairwise alignment software for RNA sequences)
MXSCARNA(Multiple alignment software for RNA sequences)
SCARNA_LM(Local multiple alignment software for RNA sequences)
LCM(Linear time Closed itemset Miner)
PrefixSpan(Frequent Sequential Pattern Miner)
iboost (Itemset Boosting)