I'm super happy (and lucky) that all the main thesis chapters (except for Introduction and Conclusion) of my thesis are available as published works (either in journals or as preprints for now).
Chapter 2: Singh and Bowman, JCTC, 2017
Chapter 3: Sun and Singh, et al., eLife, 2018
Chapter 4: Cruz and Frederick, et al., 2020
Chapter 5: Cubuk et al, Biorxiv, 2020
Chapter 6: Zimmerman et al, Biorxiv, 2020
Chapter 7: Brown et al, JBC, 2020
I've also embedded the full thesis in PDF form below!