JMDE

Model-based Distance Embedding (MDE) and Joint Model-based Distance Embedding (JMDE) methods developed in the papers:

Zhang, Y., Mao, D. and Ouyang, Z. (2022) Model-based distance embedding with applications to chromosomal conformation biology. The Annals of Applied Statistics, 16(3), pp.1253-1267.

Zhang, Y. and Ouyang, Z. (2023) Joint model-based distance embedding of multi-track Hi-C data for chromosomal conformation learning. Accepted at Statistics and Its Interface.

https://github.com/Zhang-Data-Science-Lab/JMDE