bayesGO: Bayesian ontology fingerprint, a statistical framework for biomedical literature mining.

GGPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture.

GPA: Genetic analysis incorporating Pleiotropy and Annotation.

PICS: Pathway-guided Identification of Cancer Subgroups.

MOSAiCS: MOdel-based one and two Sample Analysis and Inference for ChIP-Seq data.

: High Resolution TFBS Identification using ChIP-exo, PET and SET ChIP-Seq data.

CSEM: Multi-read allocation of ChIP-Seq data.

: Sparse Partial Least Squares (SPLS) Regression and Classification.