Publications

For a complete list of publications, please click here for PubMed.

All 3D maps are published in the Electron Microscopy Data Bank.

Representative publications, including all software descriptions

Zhou A, Rohou A, Schep DG, Bason JV, Montgomery MG, Walker JE, Grigorieff N,

Rubinstein JL (2015). Structure and conformational states of the bovine mitochondrial ATP

synthase by cryo-EM. eLife e10180. doi: 10.7554/eLife.10180 (bioRxiv http://dx.doi.org/10.1101/023770).

Zhao J, Brubaker MA, Benlekbir S, Rubinstein JL (2015). Description and comparison of

algorithms for correcting anisotropic magnification in cryo-EM images. J Struct Biol 192,

209-15 (ArXiv 1501.05928).

Rubinstein JL, Brubaker MA (2014). Alignment of cryo-EM movies of individual particles by

optimization of image translations. J Struct Biol 192, 188-95 (ArXiv 1409.6789).

Zhao J, Brubaker MA, Rubinstein JL (2013). TMaCS: A hybrid template matching and

classification system for partially-automated particle selection. J Struct Biol 181, 231-42.

Benlekbir S, Bueler SA, Rubinstein JL (2012). Structure of the vacuolar-type ATPase

from Saccharomyces cerevisiae at 11 Å resolution. Nature Structural and Molecular

Biology 19, 1356-62.

Baker LA, Watt IN, Runswick MJ, Walker JE, Rubinstein JL (2012). Arrangement of

subunits in intact mammalian mitochondrial ATP synthase determined by cryo-EM.

Proc Natl Acad Sci U S A 109, 11675-80.

Lau WC, Rubinstein JL (2012). Subnanometre-resolution structure of the intact Thermus

thermophilus H+-driven ATP synthase. Nature 481, 214-8.

Henderson R, Chen S, Chen JZ, Grigorieff N, Passmore LA, Ciccarelli L,

Rubinstein JL, Crowther RA, Stewart PL, Rosenthal PB (2011). Tilt-pair analysis of

images from a range of different specimens in single-particle electron

cryomicroscopy. J Mol Bio 413, 1028-46.

Baker LA, Rubinstein JL (2011). Edged watershed segmentation: a semi-interactive

algorithm for segmentation of low-resolution maps from electron cryomicroscopy. J

Struct Biol 176, 127-32.

Baker LA, Rubinstein JL (2010). Radiation damage in electron cryomicroscopy. Methods

Enzymol 481, 371-88.

Jaitly N, Brubaker MA, Rubinstein JL, Lilien RH (2010). A Bayesian method for 3D

macromolecular structure inference using class average images from single

particle electron microscopy. Bioinformatics 26, 2406-15.

Schmidt-Krey I, Rubinstein JL (2011). Electron cryomicroscopy of membrane proteins:

specimen preparation for two-dimensional crystals and single particles. Micron 42, 107-16.

Lau WC, Rubinstein JL (2010). Structure of intact Thermus thermophilus V-ATPase by

cryo-EM reveals organization of the membrane-bound V(O) motor. Proc Natl Acad Sci

U S A 107, 1367-72.

Baker LA, Smith EA, Bueler SA, Rubinstein JL (2010). The resolution dependence of

optimal exposures in liquid nitrogen temperature electron cryomicroscopy of

catalase crystals. J Struct Biol 169, 431-7.

Lau WC, Baker LA, Rubinstein JL (2008). Cryo-EM structure of the yeast ATP synthase.

J Mol Biol 382, 1256-64.

Baker LA, Rubinstein JL (2008). Angle determination for side views in single

particle electron microscopy. J Struct Biol 162, 260-70.

Rubinstein JL (2007). Structural analysis of membrane protein complexes by single

particle electron microscopy. Methods 41, 409-16.

Rubinstein JL, Walker JE, Henderson R (2003). Structure of the mitochondrial ATP

synthase by electron cryomicroscopy. EMBO J 22, 6182-92.