Docker

... the image is running a container ...

Clean:

docker rm -v $(docker ps -a -q -f status=exited)     

docker ps -a | grep Exit | cut -d ' ' -f 1 | xargs docker rm     

docker rmi $(docker images -f "dangling=true" -q)     

docker rmi $(docker images | grep "^<none>" | awk "{print $3}") 

OSX:

 rm ~/Library/Containers/com.docker.docker/Data (logout, login)

Open X:

open -a XQuartz     socat TCP-LISTEN:6000,reuseaddr,fork UNIX-CLIENT:\"$DISPLAY\"     

docker run -ti --rm -u metocean -e DISPLAY=192.168.99.1:0 -v /code:/code <image>     

ifconfig | grep vboxnet0 

Jupyter Notebook with UID/GID:

https://github.com/rosatrancoso/test_jupyter

docker run -it --rm -p 8888:8888 -e JUPYTER_ENABLE_LAB=yes -e NB_UID=`id -u` -e NB_GID=`id -g`  -v $PWD:/home/jovyan/work jupyter/scipy-notebook

My Jupyer with xarray and all the tools I need:  https://github.com/rosatrancoso/docker-scipy-notebook

Docker and Conda:

https://github.com/rosatrancoso/docker-condatests

Creating a new environment from scratch:

FROM conda/miniconda3-centos7

ADD .condarc /root/.condarc 

RUN conda init bash &&\  

           conda create -n myenv wget &&\        

           echo "conda activate myenv" >> ~/.bashrc 

Creating a new environment from yml file:

Note: The yaml file is created by conda env export > environment.yml.

FROM conda/miniconda3-centos7     

ADD environment.yml /tmp/environment.yml     

RUN conda init bash &&\         

            conda env create -f /tmp/environment.yml &&\         

             echo "conda activate myenv" >> ~/.bashrc