Publications
Preprints
108. Pigeault R., Dussert Y., Jorge R., Panza M., Raimond M., Delaunay C., Ogereau D., Moumen B., Peccoud J. & Cordaux R. (2024) Within-host environmental heterogeneity is associated with phenotypic but not genomic diversity in Wolbachia endosymbionts. bioRxiv, https://doi.org/10.1101/2024.06.20.599863.
107. Durand S., Pigeault R., Giraud I., Loisier A., Bech N., Grandjean F., Rigaud T., Peccoud J. & Cordaux R. (2023) Temporal stability of sex ratio distorter prevalence in natural populations of the isopod Armadillidium vulgare. bioRxiv, https://doi.org/10.1101/2023.11.27.568845.
106. Moraga C., Branco C., Rougemont Q., Veltsos P., Jedlička P., Muyle A., Hanique M., Tannier E., Liu X., Mendoza-Galindo E., Lemaitre C., Fields P.D., Cruaud C., Labadie K., Belser C., Briolay J., Santoni S., Cegan R., Linheiro R., Rodríguez de la Vega R.C., Adam G., El Filali A., Mossion V., Boualem A., Tavares R., Chebbi A., Cordaux R., Fruchard C., Prentout D., Velt A., Spataro B., Delmotte S., Weingartner L., Toegelová H., Tulpová Z., Cápal P., Šimková H., Štorchová H., Krüger M., Abeyawardana O.A.J., Taylor D.R., Olson M.S., Sloan D.B., Karrenberg S., Delph L.F., Charlesworth D., Giraud T., Bendahmane A., Di Genova A., Madoui A., Hobza R. & Marais G.A.B. (2023) The Silene latifolia genome and its giant Y chromosome. bioRxiv, https://doi.org/10.1101/2023.09.21.558754.
2023
105. Bacela-Spychalska K., Wattier R., Teixeira M., Cordaux R., Quiles A., Grabowski M., Wroblewski P., Ovcharenko M., Grabner D., Weber D., Weigand A.M. & Rigaud T. (2023) Widespread infection, diversification and old host associations of Nosema microsporidia in European freshwater gammarids (Amphipoda). PLoS Pathogens. 19, e1011560.
104. Prigot-Maurice C., Lheraud B., Guéritault S., Beltran-Bech S., Cordaux R., Peccoud J. & Braquart-Varnier C. (2023) Investigating Wolbachia symbiont-mediated host protection against a bacterial pathogen using a natural Wolbachia nuclear insert. Journal of Invertebrate Pathology. 197, 107893.
103. Durand S., Lheraud B., Giraud I., Bech N., Grandjean F., Rigaud T., Peccoud J. & Cordaux R. (2023) Heterogeneous distribution of sex ratio distorters in natural populations of the isopod Armadillidium vulgare. Biology Letters. 19, 20220457.
2021
102. Muller H., Loiseau V., Guillier S., Cordaux R. & Gilbert C. (2021) Assessing the impact of a viral infection on the expression of transposable elements in the cabbage looper moth (Trichoplusia ni). Genome Biology and Evolution. 13, evab231.
101. Simion P., Narayan J., Houtain A., Derzelle A., Baudry L., Nicolas E., Arora R., Cariou M., Cruaud C., Gaudray F.R., Gilbert C., Guiglielmoni N., Hespels B., Kozlowski D.K.L., Labadie K., Limasset A., Lliros M., Marbouty M., Terwagne M., Virgo J., Cordaux R., Danchin E.G.J., Hallet B., Koszul R., Lenormand T., Flot J.F. & Van Doninck K. (2021) Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga. Science Advances. 7, eabg4216.
100. Slawinski L., Israel A., Paillot C., Thibault F., Cordaux R., Atanassova R., Dédaldéchamp F. & Laloi M. (2021) Early response to dehydration six-like transporter family: early origin in Streptophytes and evolution in land plants. Frontiers in Plant Science. 12, 681929.
99. Russel A., Borrelli S., Fontana R., Laricchiuta J., Pascar J., Becking T., Giraud I., Cordaux R. & Chandler C. (2021) Evolutionary transition to XY sex chromosomes associated with Y-linked duplication of a male hormone gene in a terrestrial isopod. Heredity. 127, 266-277.
98. Loiseau V., Peccoud J., Bouzar C., Guillier S., Fan J., Gueli Alletti G., Meignin C., Herniou E.A., Federici B.A., Wennmann J.T., Jehle J.A., Cordaux R. & Gilbert C. (2021) Monitoring insect transposable elements in large double-stranded DNA viruses reveals host-to-virus and virus-to-virus transposition. Molecular Biology and Evolution. 38, 3512-3530.
97. Cordaux R., Chebbi M.A., Giraud I., Pleydell D.R.J. & Peccoud J. (2021) Characterization of a sex-determining region and its genomic context via statistical estimates of haplotype frequencies in daughters and sons sequenced in pools. Genome Biology and Evolution. 13, evab121.
96. Cormier A., Chebbi M.A., Giraud I., Wattier R., Teixeira M., Gilbert C., Rigaud T. & Cordaux R. (2021) Comparative genomics of strictly vertically transmitted, feminizing microsporidia endoymbionts of amphipod crustaceans. Genome Biology and Evolution. 13, evaa245.
95. Cormier A., Wattier R., Giraud I., Teixeira M., Grandjean F., Rigaud T. & Cordaux R. (2021) Draft genome sequences of Thelohania contejeani and Cucumispora dikerogammari, pathogenic microsporidia of freshwater crustaceans. Microbiology Resource Announcements. 10, e01346-20.
94. Gilbert C., Peccoud J. & Cordaux R. (2021) Transposable elements and the evolution of insects. Annual Review of Entomology. 66, 355-372.
2020
93. Loiseau V., Cordaux R., Giraud I., Beby-Defaux A., Lévêque N. & Gilbert C. (2020) Characterization of a new case of XMLV (Bxv1) contamination in the human cell line Hep2 (clone 2B). Scientific Reports. 10, 16046.
92. Becking T., Gilbert C. & Cordaux R. (2020) Impact of transposable elements on genome size variation between two closely related crustacean species. Analytical Biochemistry. 600, 113770.
91. Lewis S., Ross L., Bain S.A., Pahita E., Smith S.A., Cordaux R., Miska E.M., Lenhard B., Jiggins F.M. & Sarkies P. (2020) Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods. PLoS Genetics. 16, e1008864.
90. Grandjean F., Gan H.M., Moumen B., Giraud I., Hatira S., Cordaux R. & Austin C.M. (2020) Dataset for sequencing and de novo assembly of the European endangered white-clawed crayfish (Austropotamobius pallipes) abdominal muscle trancriptome. Data in Brief. 29, 105166.
89. Loiseau V., Herniou E.A., Moreau Y., Lévêque N., Meignin C., Daeffler L., Federici B., Cordaux R. & Gilbert C. (2020) Wide spectrum and high frequency of genomic structural variation, including transposable elements, in large double-stranded DNA viruses. Virus Evolution. 6, vez060.
88. Becking T., Delaunay C., Cordaux R., Berjeaud J.M., Braquart-Varnier C. & Verdon J. (2020) Shedding light on the antimicrobial peptide arsenal of terrestrial isopods: focus on armadillidins, a new crustacean AMP family. Genes. 11, 93.
2019
87. Durand S., Grandjean F., Giraud I., Cordaux R., Beltran-Bech S. & Bech N. (2019) Fine-scale population structure analysis in Armadillidium vulgare (Isopoda: Oniscidea) reveals strong female philopatry. Acta Oecologica. 101, 103478.
86. Ray D.A., Paulat N., An W., Boissinot S., Cordaux R., Kaul T., Freeman B. & Belancio V. (2019) The 2019 FASEB science research conference on the mobile DNA conference: 25 years of discussion and research, June 23-28, Palm springs, California, USA. FASEB Journal. 33, 11625-11628.
85. Becking T., Chebbi M.A., Giraud I., Moumen B., Laverré T., Caubet Y., Peccoud J., Gilbert C.* & Cordaux R.* (2019) Sex chromosomes control vertical transmission of feminizing Wolbachia symbionts in an isopod. PLoS Biology. 17, e3000438. * RC and CG are equal senior authors.
84. Chebbi M.A., Becking T., Moumen B., Giraud I., Gilbert C., Peccoud J. & Cordaux R. (2019) The genome of Armadillidium vulgare (Crustacea, Isopoda) provides insights into sex chromosome evolution in the context of cytoplasmic sex determination. Molecular Biology and Evolution. 36, 727-741.
2018
83. Cormier A., Wattier R., Teixeira M., Rigaud T. & Cordaux R. (2018) The complete mitochondrial genome of Gammarus roeselii (Crustacea, Amphipoda): insights into mitogenome plasticity and evolution. Hydrobiologia. 825, 197-210.
82. Ribardière A., Centanni J., Dano A., Coudret J., Daguin-Thiebaut C., Houbin C., Kerdoncuff E., Jambut S., Cordaux R. & Broquet T. (2018) Female-biased sex ratios unrelated to Wolbachia infection in European species of the Jaera albifrons complex (marine isopods). Journal of Experimental Marine Biology and Ecology. 509, 91-98.
81. Badawi M., Moumen B., Giraud I., Grève P. & Cordaux R. (2018) Investigating the molecular genetic basis of cytoplasmic sex determination caused by Wolbachia endosymbionts in terrestrial isopods. Genes. 9, 290.
80. Gaulin E., Pel M.J.C., Camborde L., San-Clemente H., Courbier S., Dupouy M.A., Lengelle J., Vayssiere M., Le Ru A., Grandjean F., Cordaux R., Moumen B., Gilbert C., Cano L.M., Aury J.M., Guy J., Wincker P., Bouchez O., Klopp C. & Dumas B. (2018) Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation. BMC Biology. 16, 43.
79. Peccoud J., Cordaux R. & Gilbert C. (2018) Analyzing horizontal transfer of transposable elements on a large scale: challenges and prospects. Bioessays. 40, 1700177.
78. Lewis S.H., Quarles K.A., Yang Y., Tanguy M., Frezal L., Smith S.A., Sharma P.P., Cordaux R., Gilbert C., Giraud I., Collins D.H., Zamore P.D., Miska E.A., Sarkies P., Jiggins F.M. (2018) Pan-arthropod analysis reveals somatic piRNAs as an ancestral defence against transposable elements. Nature Ecology and Evolution. 2, 174-181.
2017
77. Peccoud J., Chebbi M.A., Cormier A., Moumen B., Gilbert C., Marcadé I., Chandler C. & Cordaux R. (2017) Untangling heteroplasmy, structure and evolution of an atypical mitochondrial genome. Genetics. 207, 269-280.
76. Gilbert C. & Cordaux R. (2017) Viruses as vectors of horizontal transfer of genetic material in eukaryotes. Current Opinion in Virology. 25, 16-22.
75. Cordaux R. & Gilbert C. (2017) Evolutionary significance of Wolbachia-to-animal horizontal gene transfer: female sex determination and the f element in the isopod Armadillidium vulgare. Genes. 8, 186.
74. Loiseau V., Giraud I., Federici B., Bigot Y., Cordaux R. & Gilbert C. (2017) Iridovirus IIV31: un pathogène d'isopodes terrestres remarquable [Iridovirus IIV31, a remarkable virus infecting terrestrial isopods]. Virologie. 21, 147-149.
73. Peccoud J., Loiseau V., Cordaux R. & Gilbert C. (2017) Massive horizontal transfer of transposable elements in insects. Proceedings of the National Academy of Sciences of the USA. 114, 4721-4726.
72. Becking T., Giraud I., Raimond M., Moumen B., Chandler C., Cordaux R.* & Gilbert C.* (2017) Diversity and evolution of sex determination systems in terrestrial isopods. Scientific Reports. 7, 1084. * RC and CG are equal senior authors.
2016
71. Leclercq S., Thézé J., Chebbi M.A., Giraud I., Moumen B., Ernenwein L., Grève P., Gilbert C. & Cordaux R. (2016) Birth of a W sex chromosome by horizontal transfer of Wolbachia bacterial symbiont genome. Proceedings of the National Academy of Sciences of the USA. 113, 15036–15041.
70. Gilbert C., Peccoud J., Chateigner A., Moumen B., Cordaux R.* & Herniou E.A.* (2016) Continuous influx of genetic material from host to virus populations. PLoS Genetics. 12, e1005838. * RC and EAH are equal senior authors.
2015
69. Comandatore F., Cordaux R., Bandi C., Blaxter M.L., Darby A., Makepeace B., Montagna M. & Sassera D. (2015) Supergroup C Wolbachia, mutualist symbionts of filarial nematodes, have a distinct genome structure. Open Biology. 5, 150099.
68. Metegnier G., Becking T., Chebbi M.A., Giraud I., Moumen B., Schaack S., Cordaux R. & Gilbert C. (2015) Comparative paleovirological analysis of crustaceans identifies multiple widespread viral groups. Mobile DNA. 6, 16.
67. Hoen D.R., Hickey G., Bourque G., Casacuberta J., Cordaux R., Feschotte C., Fiston-Lavier A.S., Hua-Van A., Hubley R., Kapusta A., Lerat E., Maumus F., Pollock D.D., Quesneville H., Smit A., Wheeler T.J., Bureau T.E. & Blanchette M. (2015) A call for benchmarking transposable element annotation methods. Mobile DNA. 6, 13.
66. Chandler C.H., Badawi M., Moumen B., Grève P. & Cordaux R. (2015) Multiple conserved heteroplasmic sites in tRNA genes in the mitochondrial genomes of terrestrial isopods (Onisicidea). G3: Genes Genomes Genetics. 5, 1317-1322.
65. Cerveau N., Gilbert C., Liu C., Garrett R.A., Grève P., Bouchon D. & Cordaux R. (2015) Genomic context drives transcription of insertion sequences in the bacterial endosymbiont Wolbachia wVulC. Gene. 564, 81-86.
64. Badawi M., Grève P. & Cordaux R. (2015) Feminization of the isopod Cylisticus convexus after transinfection of the wVulC Wolbachia strain of Armadillidium vulgare. PLoS One. 10, e0128660.
2014
63. Badawi M., Giraud I., Vavre F., Grève P. & Cordaux R. (2014) Signs of neutralization in a redundant gene involved in homologous recombination in Wolbachia endosymbionts. Genome Biology and Evolution. 6, 2654-2664.
62. Masson S., Faivre C., Giraud I., Souty-Grosset C., Cordaux R., Delaunay C., Bouchon D. & Bech N. (2014) Development of a microsatellite primer set to investigate the genetic structure of Armadillidium nasatum (Crustacea, Oniscidea). Journal of Genetics. 93, 545-549.
61. Thézé J., Leclercq S., Moumen B., Cordaux R. & Gilbert C. (2014) Remarkable diversity of endogenous viruses in a crustacean genome. Genome Biology and Evolution. 6, 2129-2140.
60. Leclercq S., Dittmer J., Bouchon D. & Cordaux R. (2014) Phylogenomics of 'Candidatus Hepatoplasma crinochetorum', a lineage of Mollicutes associated with non-insect arthropods. Genome Biology and Evolution. 6, 407-415.
59. Gilbert C., Chateigner A., Ernenwein L., Barbe V., Bézier A., Herniou E.A.* & Cordaux R.* (2014) Population genomics supports baculoviruses as vectors of horizontal transfer of insect transposons. Nature Communications. 5, 3348. * RC and EAH are equal senior authors.
2013
58. Giraud I., Valette V., Bech N., Grandjean F. & Cordaux R. (2013) Isolation and characterization of microsatellite loci for the isopod crustacean Armadillidium vulgare and transferability in terrestrial isopods. PLoS One. 8, e76639.
57. Comandatore F., Sassera D., Montagna M., Kumar S., Koutsovoulos G., Thomas G., Repton C., Babayan S.A., Gray N., Cordaux R., Darby A., Makepeace B. & Blaxter M. (2013) Phylogenomics and analysis of shared genes suggest a single transition to mutualism in Wolbachia of nematodes. Genome Biology and Evolution. 5, 1668-1674.
56. Gilbert C. & Cordaux R. (2013) Horizontal transfer and evolution of prokaryote transposable elements in eukaryotes. Genome Biology and Evolution. 5, 822-832.
2012
55. Leclercq S. & Cordaux R. (2012) Selection-driven extinction dynamics for group II introns in Enterobacteriales. PLoS One. 7, e52268.
54. Darby A.C., Armstrong S.D., Bah G.S., Kaur G., Hughes M.A., Kay S.M., Koldkjaer P., Rainbow L., Radford A.D., Blaxter M.L., Tanya V.N., Trees A.V., Cordaux R., Wastling J.M. & Makepeace B.L. (2012) Analysis of gene expression from the Wolbachia genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis. Genome Research. 22, 2467-2477.
53. Ainouche K., Bétermier M., Chandler M., Cordaux R., Cristofari G., Deragon J.M., Lesage P., Quesneville H., Panaud O.,Vaury C., Vieira C. & Vitte C. (2012) International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories. Mobile DNA. 3, 17.
52. Leclercq S., Gilbert C. & Cordaux R. (2012) Cargo capacity of phages and plasmids and other factors influencing horizontal transfers of prokaryote transposable elements. Mobile Genetic Elements. 2, 115-118.
51. Cordaux R., Pichon S., Ben Afia Hatira H., Doublet V., Grève P., Marcadé I., Braquart-Varnier C., Souty-Grosset C., Charfi-Cheikhrouha F. & Bouchon D. (2012) Widespread Wolbachia infection in terrestrial isopods and other crustaceans. Zookeys. 176, 123-131.
2011
50. Cerveau N., Leclercq S., Leroy E., Bouchon D. & Cordaux R. (2011) Short and long-term evolutionary dynamics of bacterial insertion sequences: insights from Wolbachia endosymbionts. Genome Biology and Evolution. 3, 1175-1186.
49. Leclercq S. & Cordaux R. (2011) Do phages efficiently shuttle transposable elements among prokaryotes? Evolution. 65, 3327-3331.
48. Cordaux R., Bouchon D. & Grève P. (2011) The impact of endosymbionts on the evolution of host sex-determination mechanisms. Trends in Genetics. 27, 332-341.
47. Cerveau N., Leclercq S., Bouchon D. & Cordaux R. (2011) Evolutionary dynamics and genomic impact of prokaryote transposable elements. In Evolutionary Biology: concepts, biodiversity, macroevolution and genome evolution, P. Pontarotti Ed. Springer, Berlin, pp. 291-312.
46. Bouchon D., Cordaux R. & Grève P. (2011) Rickettsiella, intracellular pathogens of arthropods. In Manipulative tenants: bacteria associated with arthropods, E. Zchori-Fein and K. Bourtzis Eds. Taylor and Francis Group LLC, Boca Raton, FL, pp. 127-148.
45. Leclercq S., Giraud I. & Cordaux R. (2011) Remarkable abundance and evolution of mobile group II introns in Wolbachia bacterial endosymbionts. Molecular Biology and Evolution. 28, 685-697.
2010
44. Ling A. & Cordaux R. (2010) Insertion sequence inversions mediated by ectopic recombination between terminal inverted repeats. PLoS One. 5, e15654.
43. Cordaux R., Sen S.K., Konkel M.K. & Batzer M.A. (2010) Computational methods for the analysis of primate mobile elements. In Methods in Molecular Biology - Genetic Variation, Volume 628, M.R. Barnes and G. Breen Eds. Humana Press Inc, Totowa, NJ, pp. 137-151.
2009
42. Cordaux R. & Batzer M.A. (2009) The impact of retrotransposons on human genome evolution. Nature Reviews Genetics. 10, 691-703.
41. Pichon S., Bouchon D., Cordaux R., Chen L., Garrett R.A. & Grève P. (2009) Conservation of the type IV secretion system throughout Wolbachia evolution. Biochemical and Biophysical Research Communications. 385, 557-562.
40. Cordaux R. (2009) Gene conversion maintains non-functional transposable elements in an obligate mutualistic endosymbiont. Molecular Biology and Evolution. 26, 1679-1682.
2008
39. Cordaux R. (2008) The human genome in the LINE of fire. Proceedings of the National Academy of Sciences of the USA. 105, 19033-19034.
38. Bouchon D., Cordaux R. & Grève P. (2008) Feminizing Wolbachia and the evolution of sex determination in isopods. In Insect Symbiosis, Volume 3, K. Bourtzis and T. Miller Eds. Taylor and Francis Group LLC, Boca Raton, FL, pp. 273-294.
37. Cordaux R., Pichon S., Ling A., Pérez P., Delaunay C., Vavre F., Bouchon D. & Grève P. (2008) Intense transpositional activity of insertion sequences in an ancient obligate endosymbiont. Molecular Biology and Evolution. 25, 1889-1896.
36. Cordaux R. & Bouchon D. (2008) Reorganization and monophyly of the genus Rickettsiella: all in good time - Authors' reply. Applied and Environmental Microbiology. 74, 5264.
35. Doublet V., Souty-Grosset C., Bouchon D., Cordaux R.* & Marcadé I.* (2008) A thirty million year-old inherited heteroplasmy. PLoS One. 3, e2938. * RC and IM are equal senior authors.
34. Cordaux R. & Batzer M.A. (2008) Evolutionary emergence of genes through retrotransposition. In Encyclopedia of Life Sciences: Handbook of Human Molecular Evolution, Volume 2, D.N. Cooper & H. Kehrer-Sawatzki Eds. John Wiley & Sons Ltd., Chichester, UK, pp. 996-1003.
33. Cordaux R. (2008) ISWpi1 from Wolbachia pipientis defines a novel group of insertion sequences within the IS5 family. Gene. 409, 20-27.
2007
32. Marcadé I., Cordaux R., Doublet V., Debenest C., Bouchon D. & Raimond R. (2007) Structure and evolution of the atypical mitochondrial genome of Armadillidium vulgare (Isopoda, Crustacea). Journal of Molecular Evolution. 65, 651-659.
31. Cordaux R., Paces-Fessy M., Raimond M., Michel-Salzat A., Zimmer M. & Bouchon D. (2007) Molecular characterization and evolution of arthropod pathogenic Rickettsiella bacteria. Applied and Environmental Microbiology. 73, 5045-5047.
30. Cordaux R., Srikanta D., Lee J., Stoneking M. & Batzer M.A. (2007) In search of polymorphic Alu insertions with restricted geographic distributions. Genomics. 90, 154-158.
29. Herke S.W., Xing J., Ray D.A., Zimmerman J.W., Cordaux R. & Batzer M.A. (2007) A SINE-based dichotomous key for primate identification. Gene. 390, 39-51.
28. Lee J.*, Cordaux R.*, Han K.*, Wang J., Hedges D.J., Liang P. & Batzer M.A. (2007) Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons. Gene. 390, 18-27. * JL, RC and KH contributed equally to this work.
2006
27. Xing J., Wang H., Belancio V.P., Cordaux R., Deininger P.L. & Batzer M.A. (2006) Emergence of new primate genes by retrotransposon-mediated sequence transduction. Proceedings of the National Academy of Sciences of the USA. 103, 17608-17613.
26. Kayser M., Brauer S., Cordaux R., Casto A., Lao O., Zhivotovsky L.A., Moyse-Faurie C., Rutledge R.B., Schiefenhoevel W., Gil D., Lin A.A., Underhill P.A., Oefner P.J., Trent R.J. & Stoneking M. (2006) Melanesian and Asian origins of Polynesians: mtDNA and Y-chromosome gradients across the Pacific. Molecular Biology and Evolution. 23, 2234-2244.
25. Sen S.K., Han K., Wang J., Lee J., Wang H., Callinan P.A., Dyer M., Cordaux R., Liang P. & Batzer M.A. (2006) Human genomic deletions mediated by recombination between Alu elements. American Journal of Human Genetics. 79, 41-53.
24. Cordaux R., Lee J., Dinoso L. & Batzer M.A. (2006) Recently integrated Alu retrotransposons are essentially neutral residents of the human genome. Gene. 373, 138-144.
23. Cordaux R., Hedges D.J., Herke S.W. & Batzer M.A. (2006) Estimating the retrotransposition rate of human Alu elements. Gene. 373, 134-137.
22. Cordaux R., Udit S., Batzer M.A. & Feschotte C. (2006) Birth of a chimeric primate gene by capture of the transposase gene from a mobile element. Proceedings of the National Academy of Sciences of the USA. 103, 8101-8106.
21. Seleme M.C., Vetter M., Cordaux R., Bastone L., Batzer M.A. & Kazazian H.H. (2006) Extensive individual variation in L1 retrotransposition capability contributes to human genetic diversity. Proceedings of the National Academy of Sciences of the USA. 103, 6611-6616.
20. Cordaux R. & Batzer M.A. (2006) Teaching an old dog new tricks: SINEs of canine genomic diversity. Proceedings of the National Academy of Sciences of the USA. 103, 1157-1158.
2005
19. Nasidze I., Quinque D., Dupanloup I., Cordaux R., Kokshunova L. & Stoneking M. (2005) Genetic evidence for the Mongolian ancestry of Kalmyks. American Journal of Physical Anthropology. 128, 846-854.
18. Hedges D.J.*, Cordaux R.*, Xing J., Witherspoon D.J., Rogers A.R., Jorde L.B. & Batzer M.A. (2005) Modeling the amplification dynamics of human Alu retrotransposons. PLoS Computational Biology. 1, 333-340. * DJH and RC contributed equally to this work.
17. Han K., Sen S.K., Wang J., Callinan P.A., Lee J., Cordaux R., Liang P. & Batzer M.A. (2005) Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages. Nucleic Acids Research. 33, 4040-4052.
16. Han K., Xing J., Wang H., Hedges D.J., Garber R.K., Cordaux R. & Batzer M.A. (2005) Under the genomic radar: the stealth model of Alu amplification. Genome Research. 15, 655-664.
2004
15. Xing J., Hedges D.J., Han K., Wang H., Cordaux R. & Batzer M.A. (2004) Alu element mutation spectra: molecular clocks and the effect of DNA methylation. Journal of Molecular Biology. 344, 675-682.
14. Cordaux R., Hedges D.J. & Batzer M.A. (2004) Retrotransposition of Alu elements: how many sources? Trends in Genetics. 20, 464-467.
13. Cordaux R., Weiss G., Saha N. & Stoneking M. (2004) The northeast Indian passageway: a barrier or corridor for human migrations? Molecular Biology and Evolution. 21, 1525-1533.
12. Cordaux R., Bentley G., Aunger R., Sirajuddin S.M. & Stoneking M. (2004) Y-STR haplotypes from eight south Indian groups based on five loci. Journal of Forensic Sciences. 49, 847-848.
11. Cordaux R., Michel-Salzat A., Frelon-Raimond M., Rigaud T. & Bouchon D. (2004) Evidence for a new feminizing Wolbachia strain in the isopod Armadillidium vulgare: evolutionary implications. Heredity. 93, 78-84.
10. Hedges D.J., Callinan P.A., Cordaux R., Xing J., Barnes E. & Batzer M.A. (2004) Differential Alu mobilization and polymorphism levels among the chimpanzee and human lineages. Genome Research. 14, 1068-1075.
9. Nasidze I., Ling E., Quinque D., Dupanloup I., Cordaux R., Rychkov S., Naumova O., Zhukova O., Sarraf-Zadegan N., Naderi G.A., Asgary S., Sardas S., Farhud D.D., Sarkisian T., Asadov C., Kerimov A. & Stoneking M. (2004) Mitochondrial DNA and Y-chromosome variation in the Caucasus. Annals of Human Genetics. 68, 205-221.
8. Hughes D.A., Cordaux R. & Stoneking M. (2004) Quick guide: humans. Current Biology. 14, R367-R369.
7. Cordaux R., Deepa E., Vishwanathan H. & Stoneking M. (2004) Genetic evidence for the demic diffusion of agriculture to India. Science. 304, 1125.
6. Vishwanathan H., Deepa E., Cordaux R., Stoneking M., Usha Rani M.V. & Majumder P.P. (2004) Genetic structure and affinities among tribal populations of southern India: a study of 24 autosomal DNA markers. Annals of Human Genetics. 68, 128-138.
5. Cordaux R., Aunger R., Bentley G., Nasidze I., Sirajuddin S.M. & Stoneking M. (2004) Independent origins of Indian caste and tribal paternal lineages. Current Biology. 14, 231-235.
2003
4. Cordaux R. & Stoneking M. (2003) South Asia, the Andamanese and the genetic evidence for an "early" human dispersal out of Africa. American Journal of Human Genetics. 72, 1586-1590.
3. Cordaux R., Saha N., Bentley G.R., Aunger R., Sirajuddin S.M. & Stoneking M. (2003) Mitochondrial DNA analysis reveals diverse histories of tribal populations from India. European Journal of Human Genetics. 11, 253-264.
2001
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