Representative Publications: Optimal design in genomic selection (81); Phenotypic plasticity and genotype by environment interaction (77); Genomic selection (GS) and turbocharging genebanks (72 & 14); GWAS and genome-wide signal distribution for complex traits (43); Gene cloning through an integrated approach and Tannin1 (42); Shattering1 gene cloning, comparative genomics, and parallel domestication (41); Composite resequencing-based GWAS strategy (37); Genome-wide base composition patterns (62); Genome size variation, repeat expansion, and chromosome size evolution and modeling (34); Association mapping methodology and applications (25, 23, 28, & 31 ); Nested association mapping concept and simulation demonstration (18); Unified mixed model method for association mapping (11).
Full Publication List (†denotes general methodology papers.)
86. Char, S.N., J. Wei, Q. Mu, X. Li, Z. Zhang, J. Yu, and B. Yang. 2019. An Agrobacterium-delivered CRISPR/Cas9 system for targeted mutagenesis in sorghum. Plant Biotechnology Journal.
85. Su, Z., A. Bernardo, B. Tian, H. Chen, S. Wang, H. Ma, S. Cai, D. Liu, D. Zhang, T. Li, H. Trick, P. St. Amand, J. Yu, Z. Zhang, and G. Bai. 2019. A deletion mutation in TaHRC confers Fhb1 resistance to Fusarium head blight in wheat. Nature Genetics 51:1099–1105.
84. Wang, J., X. Li, K.D. Kim, M.J. Scanlon, S.A. Jackson, N.M. Springer, and J. Yu. 2019. Genome-wide nucleotide patterns and potential mechanisms of genomedivergence following domestication in maize and soybean. Genome Biology 20:74.
83. Andorf, C., W.D. Beavis, M. Hufford, S. Smith, W.P. Suza, K. Wang, M. Woodhouse, J. Yu, and T. Lübberstedt. 2019. Technological advances in maizebreeding: Past, present and future. Theoretical and Applied Genetics 132:817–849.
82. Dzievit, M., X. Li, and J. Yu. 2019. Dissection of leaf angle variation in maize through genetic mapping and meta-analysis. The Plant Genome 12:180024.
81†. Guo, T., X. Yu, X. Li, H. Zhang, C. Zhu, S. Flint-Garcia, M.D. McMullen, J.B. Holland, S.J. Szalman, R.J. Wisser, and J. Yu. 2019. Optimal designs for genomic selection in hybrid crops. Molecular Plant 12:390-401.
80. McNellie, J.P., J. Chen, X. Li, and J. Yu. 2018. Genetic mapping of foliar and tassel heat stress tolerance in maize. Crop Science 58:2484-2493.
79. Lyra, D.H., Í.S.C. Granato, P.P.P. Morais, F.C. Alves, A.R.M. dos Santos, X. Yu, T. Guo, J. Yu, R. Fritsche-Neto. 2018. Controlling population structure in the genomic prediction of tropical maize hybrids. Molecular Breeding 38:126.
78. Liu S., J.C. Schnable, A. Ott, C.T. Yeh, N.M. Springer, J. Yu, G.J. Muehlbauer, M.C.P. Timmermans, M.J. Scanlon, and P.S. Schnable. 2018. Intragenic meiotic crossovers generate novel alleles with transgressive expression levels. Molecular Biology and Evolution 35:2762-2772.
77†. Li. Xin, T. Guo, Q. Mu, Xianran Li, and J. Yu. 2018. Genomic and environmental determinants and their interplay underlying phenotypic plasticity. PNAS 115:6679-6684.
76. Zhang, Z., X. Zhang, Z. Lin, J. Wang, M. Xu, J. Lai, J. Yu, and Z. Lin. 2018. The genetic architecture of maize nodal root number during domestication. Plant Journal 93:1032-1044.
75. Gage, J.L., D. Jarquin, C. Romay, A. Lorenz, E.S. Buckler, S. Kaeppler, …, J. Yu… and Natalia de Leon. 2017. The effect of artificial section on phenotypic plasticity in maize. Nature Communications 8:1348.
74. Bouchet, S., M.O. Olatoye, S.R. Marla, R. Perumal, T. Tesso, J. Yu, and M. Tuinstra, and G.P. Morris. 2017. Increased power to dissect adaptive traits in global sorghum diversity using a nested association mapping population. Genetics 206:573-585.
73. Lin, M., D. Zhang, S. Liu, G. Zhang, J. Yu, A.K. Fritz, and G. Bai. 2016. Genome-wide association analysis on pre-harvest sprouting resistance and grain color in US winter wheat. BMC Genomics 17:794.
76. Zhang, Z., X. Zhang, Z. Lin, J. Wang, M. Xu, J. Lai, J. Yu, and Z. Lin. 2018. The genetic architecture of maize nodal root number during domestication. Plant Journal 93:1032-1044.
75. Gage, J.L., D. Jarquin, C. Romay, A. Lorenz, E.S. Buckler, S. Kaeppler, …, J. Yu… and Natalia de Leon. 2017. The effect of artificial section on phenotypic plasticity in maize. Nature Communications 8:1348.
74. Bouchet, S., M.O. Olatoye, S.R. Marla, R. Perumal, T. Tesso, J. Yu, and M. Tuinstra, and G.P. Morris. 2017. Increased power to dissect adaptive traits in global sorghum diversity using a nested association mapping population. Genetics 206:573-585.
73. Lin, M., D. Zhang, S. Liu, G. Zhang, J. Yu, A.K. Fritz, and G. Bai. 2016. Genome-wide association analysis on pre-harvest sprouting resistance and grain color in US winter wheat. BMC Genomics 17:794.
72†. Yu, X., X. Li, T. Guo, C. Zhu, Y. Wu, S.E. Mitchell, K.L. Roozeboom, D. Wang, M.L. Wang, G.A. Pederson, T.T. Tesso, P.S. Schnable, R. Bernardo, and J. Yu. 2016. Genomic prediction contributing to a promising global strategy to turbocharge gene banks. Nature Plants 2:16150.
71. Wang, M.L., M. Dzievit, Z. Chen, J.B. Morris, J.E. Norris, N.A. Barkley, B. Tonnis, G.A. Pederson, and J. Yu. 2016. Genetic diversity and population structure of castor (Ricinus communis L.) germplasm within the U.S. collection assessed with EST-SSR markers. Genome 60:193-200.
70. Sukumaran, S., Xin Li, Xianran Li, C. Zhu, G. Bai, R. Perumal, M.R. Tuinstra, P.V.V. Prasad, S.E. Mitchell, T.T. Tesso, and J. Yu. 2016. QTL mapping for grain yield, flowering time, and stay-green traits in sorghum using genotyping-by-sequencing markers. Crop Science 56:1429-1442.
69. Adeyanju, A., J. Yu, C. Little, W. Rooney, P. Klein, J.J. Burke, and T. Tesso. 2016. Sorghum recombinant inbred lines segregating for stay-green QTLs and leaf dhurrin content show differential reaction to stalk rot diseases. Crop Science (online first).
68†. Yang, J., H. Jiang, C.T. Yeh, J. Yu, J.A., Jeddeloh, D. Nettleton, and P.S. Schnable. 2015. Extreme-phenotype genome-wide association study (XP-GWAS): a method for identifying trait-associated variants by sequencing pools of individuals selected from a diversity panel. Plant Journal 84:587-596.
67. Leiboff, S., X. Li, H. Alvis, N. Todt, J. Yang, X. Li, X. Yu, G.J. Muehlbauer, M.C.P. Timmermans, J. Yu, P.S. Schnable, and M.J. Scanlon. 2015. Genetic control of morphometric diversity in the maize shoot apical meristem. Nature Communications 6:8974.
66. Li, Xin, Xianran Li, E. Fridman, T.T. Tesso, and J. Yu. 2015. Dissecting repulsion linkage in the drawfing gene Dw3 region for sorghum plant height provides insights into heterosis. PNAS 112:11823-11828.
65. Tabanao, D.A., A.E. Pocsedio, J.C. Yabes, M.C. Niño, R.A. Millas, N. Rosandra, L. Sevilla, Y. Xiao, and J. Yu. 2015. Genetic diversity and population structure in a rice breeding panel based on single nucleotide polymorphism and simple sequence repeat markers. Plant Genetics Resources 13:195-205.
64. Adeyanju, A., C. Little, J. Yu, and T. Tesso. 2015. Genome-wide association study on resistance to stalk rot diseases in grain sorghum. G3: Genes, Genomes, Genetics 5:1165-1175.
63. Thompson, A.M., J. Yu, M.C.P. Timmermans, P. Schnable, J.C. Crants, M.J. Scanlon, and G.J. Muehlbauer. 2015. Diversity of maize shoot apical meristem architecture and its relationship to plant morphology. G3: Genes, Genomes, Genetics 5:819-827.
62. Li, X., M.J. Scanlon, and J. Yu. 2015. Evolutionary patterns of DNA base composition and correlation to polymorphisms in DNA repair systems. Nucleic Acids Research 43:3614-3625.
61. Lipka, A.E., C.B. Kandianis, M.E. Hudson, J. Yu, J. Drnevich, P.J. Bradbury, and M.A. Gore. 2015. From association to prediction: statistical methods for the dissection and selection of complex traits in plants. Current Opinion in Plant Biology 24:110-118.
60. Xu, F., L. Zhou, K. Zhang, J. Yu, and D. Wang. 2015. Rapid determination of both structural polysaccharides and soluble sugars in sorghum biomass using near-infrared spectroscopy. BioEnergy Research 8:130-136.
59†. Li, M., X. Liu, P. Bradbury, J. Yu, Y.-M. Zhang, R.J. Todhunter, E.S. Buckler, and Z. Zhang. 2014. Enrichment of statistical power for genome-wide association studies. BMC Biology 12:73.
58. Wang, M.L, M. Cole, B. Tonnis, D. Pinnow, Z. Xin, J. Davis, Y.-C. Hung, J. Yu, G.A. Pederson, G. Eggleston. 2014. Comparison of stem damage and carbohydrate composition in the stem juice between sugarcane and sweet Sorghum harvested before and after late fall frost. Journal of Sustainable Bioenergy Systems 4:161-174.
57. Zhang, D., R.L. Bowden, J. Yu, B.F. Carver, and G. Bai. 2014. Association analysis of stem rust resistance in U.S. winter wheat. PLoS One: 9:e103747.
56. Thompson, A.M., J.E. Crants, P.S. Schnable, J. Yu, M.C.P. Timmermans, N.M. Springer, M.J. Scanlon, and G.J. Muehlbauer. 2014. Genetic control of maize shoot apical meristem architecture. G3: Genes, Genomes, Genetics 114:011940.
55. Li, L., S.R. Eichten, R. Shimizu, K. Petsch, C.T. Yeh, W. Wu, A.M. Chettoor, S.A. Givan, R.A. Cole, J.E. Fowler, M.M.S. Evans, M.J. Scanlon, J. Yu, P.S. Schnable, M.C.P. Timmermans, N.M. Springer, and G.J. Muehlbauer. 2014. Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biology 15:R40.
54. Narayanan, S., R.M. Aiken, P.V. Prasad, Z. Xin, G. Paul, and J. Yu. 2014. A simple quantitative model to predict leaf area index in sorghum. Agronomy Journal 106:219-226.
53. Sukumaran, S., and J. Yu. 2014. Association mapping of genetic resources: Achievements and future perspectives. In R. Tuberosa et al. (ed.) Genomics of Plant Genetic Resources, 207-235.
52. Morris G.P., D.H. Rhodes, Z. Brenton, P. Ramu, V.M. Thayil, S. Deshpande, C.T. Hash, C. Acharya, S.E. Mitchell, E.S. Buckler, J. Yu, and S. Kresovich. 2013. Dissecting genome-wide association signals for loss-of-function phenotypes in sorghum flavonoid pigmentation traits. G3 3:2085-2094.
51. Liu, S., S.K. Sehgal, J. Li, M. Lin, H.N. Trick, J. Yu, B.S. Gill, and G. Bai. 2013. Cloning and characterization of a critical regulator for pre-harvest sprouting in wheat. Genetics 195:263-273.
50. Yu, X., G. Bai, S. Liu, N. Luo, Y. Wang, D.S. Richmond, P.M. Pijut, S.A. Jackson, J. Yu, and Y. Jiang. 2013. Association of candidate genes with drought tolerance traits in diverse perennial ryegrass accessions. Journal of Experimental Botany 64:1537-1551.
49. Li, L., K. Petsch, R. Shimizu, S. Liu, W.W. Xu, K. Ying, J. Yu, M.J. Scanlon, P.S. Schnable, M.C.P. Timmermans, N.M. Springer, and G.J. Muehlbauer. 2013. Mendelian and non-Mendelian regulation of gene expression in maize. PLoS Genetics 9: e1003202.
48. Xu, F., J. Yu, T. Tesso, F. Dowell, and D. Wang. 2013. Qualitative and quantitative analysis of lignocellulosic biomass using infrared techniques: A mini-review. Applied Energy 104:801–809.
47. Yu, J., M.T. Hamblin, and M.R. Tuinstra. 2013. Association genetics strategies and resources. In A. Paterson (ed.) Genetics and Genomics of the Saccharinae. Plant Genetics and Genomics: Crops and Models 11:187-203. Springer Verlag.
46. Wang, M., Z. Xin, B. Tonnis, G. Farrell, D. Pinnow, Z. Chen, J. Davis, J. Yu, Y. Hung, and G. Pederson. 2012. Evaluation of sweet sorghum as a feedstock by multiple harvests for sustainable bioenergy production. Journal of Sustainable Bioenergy Systems 2:122-137.
45. Sukumaran, S., W. Xiang, S.R. Bean, J.F. Pedersen, S. Kresovich, M.R. Tuinstra, T.T. Tesso, M.T. Hamblin, and J. Yu. 2012. Association mapping for grain quality in a diverse sorghum collection. The Plant Genome 5:126-135.
44. Takacs, E.M., J. Li, C., Du, L. Ponnala, D. Janick-Buckner, J. Yu, G. Muehlbauer, P.S. Schnable, M.C.P. Timmermans, Q. Sun, D. Nettleton, and M.J. Scanlon. 2012. Ontogeny of the maize shoot apical meristem. Plant Cell 8:3219-3234.
43†. Li, X., C. Zhu, C.-T. Yeh, W. Wu, K. Petsch, E. Takacs, F. Tian, G. Bai, E.S. Buckler, G. Muehlbauer, M. Timmermans, M. Scanlon, P.S. Schnable and J. Yu. 2012. Genic and non-genic contributions to natural variation of quantitative traits in maize. Genome Research 22:2436-2444. (News release at ScienceDaily: Prioritizing Rather Than Canvassing Entire Plant Genome May Lead to Improved Crops).
42. Wu, Y., X. Li, W. Xiang, C. Zhu, Z. Lin, Y. Wu, J. Li, S. Pandravada, D.D. Ridder, G. Bai, M.L. Wang, H.N. Trick, S.R. Bean, M.R. Tuinstra, T.T. Tesso, and J. Yu. 2012. Presence of tannins in sorghum grains is conditioned by different natural alleles of Tannin1. PNAS 109:10281-10286. (News release at PhysOrg: Tannins in sorghum and benefits focus of genetic research).
41. Lin, Z., X. Li, L.M. Shannon, C.-T. Yeh, M.L. Wang, G. Bai, Z. Peng, J. Li, H.N. Trick, T.E. Clemente, J. Doebley, P.S. Schnable, M.R. Tuinstra, T.T. Tesso, F. White, and J. Yu. 2012. Parallel domestication of the Shattering1 genes in cereals. Nature Genetics 44:720–724. (News release at PhysOrg: Genes underlying the key domestication process in sorghum and other cereals), (News and Views article by Kenneth Olsen at Nature Genetics about the Sh1 paper: One gene’s shattering effects).
40. Li, X., C. Zhu, J. Wang, and J. Yu. 2012. Computer simulation in plant breeding. Advances in Agronomy 116:219-264.
39. Wang, M.L., S. Sukumaran, N.A. Barkley, Z. Chen, C.Y. Chen, B. Guo, R.N. Pittman, H.T. Stalker, C.C. Holbrook, G.A. Pederson, and J. Yu. 2011. Population structure and marker-trait association analysis of the U.S. peanut (Arachis hypogaea L.) mini-core collection. Theoretical and Applied Genetics 123:1307-1317.
38. Zhang, D., G. Bai, R.M. Hunger, W.W. Bockus, J. Yu, B.F. Carver, and G. Brown-Guedira. 2011. Association study of resistance to soilborne wheat mosaic virus in U.S. winter wheat. Phytopathology 101:1322-1329.
37†. Zhu, C., X. Li, and J. Yu 2011. Integrating rare-variant testing, function prediction, and gene network in composite resequencing-based genome-wide association studies (CR-GWAS). G3 1:233-243.
36. Nelson, J.C., S. Wang, Y. Wu, X. Li, G. Antony, F.F. White, and J. Yu. 2011. Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum. BMC Genomics 12:352.
35. Mutava, R.N., P.V.V. Prasada, M.R. Tuinstra, K.D. Kofoid, and J. Yu. 2011. Characterization of sorghum genotypes for traits related to drought tolerance. Field Crop Research 123:10-18.
34. Li, X., C. Zhu, Z. Lin, Y. Wu, D. Zhang, G. Bai, W. Song, J. Ma, G.J. Muehlbauer, M.J. Scanlon, M. Zhang, and J. Yu. 2011. Chromosome size in diploid eukaryotic species centers on the average length with a conserved boundary. Molecular Biology and Evolution 28:1901–1911. (News release at ScienceDaily: Chromosomes' Big Picture: Similarities Found in Genomes Across Multiple Species; Platypus Still out of Place).
33. Wisser, R.J. J.M. Kolkman, M.E. Patzoldt, J.B. Holland, J. Yu, M. Krakowskyc, R.J. Nelson, and P.J. Balint-Kurti. 2011. Multivariate analysis of maize disease resistances suggests a pleiotropic genetic basis and implicates a glutathione S-transferase gene. PNAS 108:7339-7344.
32. Zhang, D., G. Bai, C. Zhu, J. Yu, and B. Carver. 2010. Genetic diversity, population structure, and linkage disequilibrium in U.S. elite winter wheat (Triticum aestivum L.). The Plant Genome 3:117-127.
31†. Sun, G., C. Zhu, S. Yang, W. Song, M. H. Kramer, H.-P. Piepho, and J. Yu. 2010. Variation explained in mixed model association mapping. Heredity 105:333-340.
30†. Zhang, Z., E. Ersoz, C.-Q. Lai, R.J. Todhunter, H.K. Tiwari, M.A. Gore, P.J. Bradbury, J. Yu, D.K. Arnett, J.M. Ordovas, and E.S. Buckler. 2010. Mixed linear model approach adapted for genome-wide association studies. Nature Genetics 42:355-360.
29. Wu, X., S. Scott, J.L. Propheter, W.L. Rooney, J. Yu, and D. Wang. 2010. Features and fermentation performance of sweet sorghum juice after harvest. Industrial Crops and Products 31:164-170.
28. Tian, Z., Q. Qian, Q. Liu, M. Yan, X. Liu, C. Yan, G. Liu, Z. Gao, S. Tang, D. Zeng, Y. Wang, J. Yu, M. Gu, and J. Li. 2009. Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities. PNAS 106:21760-21765.
27. Wang, M.L., C. Zhu, N.A. Barkley, Z. Chen, J.E. Erpelding, S.C. Murray, M.R. Tuinstra, T. Tesso, G.A. Pederson, J. Yu. 2009. Genetic diversity and population structure analysis of accessions in the US historic sweet sorghum collection. Theoretical and Applied Genetics 102:13-23. (Data at GRIN)
26. Buckler, E.S., J.B. Holland, P. Bradbury, C. Acharya, P.Brown, C. Browne, M. Eller, E. Ersoz, S. Flint-Garcia, A. Garcia, J. Glaubitz, M.M. Goodman, C. Harjes, K. Guill, D.E. Kroon, S. Larsson, N. Lepak, H. Li, S.E. Mitchell, G. Pressoir, J.A. Peiffer, M.O. Rosas, T.R. Rocheford, M.C. Romay, S. Romero, S. Salvo, H.S. da Villeda, Q. Sun, F. Tian, N. Upadyayula, D. Ware, H. Yates, J. Yu, Z. Zhang, S. Kresovich, and M.M. Mullen 2009. The genetic architecture of maize flowering time. Science 325:714-718.
25†. Zhu, C., and J. Yu. 2009. Nonmetric multidimensional scaling corrects for populationstructure in association mapping with different sample types. Genetics 182:875-888.
24. Yu, J. 2009. Realizing the potential of ultrahigh throughput genomic technologies in plant breeding. The Plant Genome 2:2.
23†. Yu, J., Z. Zhang, C. Zhu, D. Tabanao, G. Pressoir, M.R. Tuinstra, S. Kresovich, R.J. Todhunter, and E.S. Buckler. 2009. Simulation appraisal of the adequacy of number of background markers for relationship estimation in association mapping. The Plant Genome 2:63-77.
22. Ochanda, N., J. Yu, P.J. Bramel, A. Menkir, M.R. Tuinstra, and M.D. Witt. 2009. Selection before backcross during exotic germplasm introgression. Field Crops Research 112:37–42.
21. Sorrells, M.E., and J. Yu. 2009. Linkage disequilibrium and association mapping in the Triticeae. In C. Feuillet and G.J. Muehlbauer (ed.) Genetics and Genomics of the Triticeae, Plant Genetics/Genomics, Vol 6, 655-684. Springer Verlag.
20. Ersoz, E., J. Yu, and E.S. Buckler. 2009. Applications of linkage disequilibrium and association mapping in maize. In A.L. Kriz and B.A. Larkins (ed.) Molecular Genetic Approaches to Maize Improvement, Biotechnology in Agriculture and Forestry, Vol 63, 173-195. Springer Verlag.
19. Zhu, C., M. Gore, E.S. Buckler, and J. Yu. 2008. Status and prospects of association mapping in plants. The Plant Genome 1:5-20.
18†. Yu, J., J.B. Holland, M.D. McMullen, and E.S. Buckler. 2008. Genetic design and statistical power of nested association mapping in maize. Genetics 138:539-551.
17. Ersoz, E., J. Yu, and E.S. Buckler. 2008. Applications of linkage disequilibrium and association mapping in crop plants. In R. Varshney and R. Tuberosa (ed.) Genomics-Assisted Crop Improvement: Vol 1: Genomics Approaches and Platforms, 97-120. Springer Verlag.
16. Weber, A., R.M. Clark, L. Vaughn, J.D.J. Sánchez-Gonzalez, J. Yu, B.S. Yandell, P. Bradbury, and J.F. Doebley. 2007. Major regulatory genes in maize contribute to standing variation in Teosinte (Zea mays ssp. parviglumis). Genetics 177:2349–2359.
15†. Tabanao, D.A., J. Yu, and R. Bernardo. 2007. Multilocus epistasis, linkage, and genetic variance in breeding populations with few parents. Theoretical and Applied Genetics 115:335-342.
14†. Bernardo, R, and J. Yu. 2007. Prospects for genomewide selection for quantitative traits in maize. Crop Science 47:1082-1090.
13. Yang, X.H., J.B. Yan, Y.P. Zheng, J. Yu, and J.S. Li. 2007. Reviews of association analysis of quantitative traits in plants. Acta Agronomica Sinica 33:523-530.
12†. Stich, B., J. Yu, A.E. Melchinger, H.-P. Piepho, F. Utz, H.P. Maurer, and E.S. Buckler. 2007. Power to detect high-order epistatic interactions in a metabolic pathway using a new mapping strategy. Genetics 176:563-570.
11†. Yu, J., G. Pressoir, W.H. Briggs, I. Vroh Bi, M. Yamasaki, J.F. Doebley, M.D. McMullen, B.S. Gaut, D. Nielsen, J.B. Holland, S. Kresovich, and E.S. Buckler. 2006. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nature Genetics 38:203-208.
10†. Arbelbide, M., J. Yu, and R. Bernardo. 2006. Power of mixed-model QTL mapping from phenotypic, pedigree, and marker data in self-pollinated crops. Theoretical and Applied Genetics 112:876-884.
9. Yu, J., and E.S. Buckler. 2006. Genetic association mapping and genome organization of maize. Current Opinion in Biotechnology 17:155-160.
8. Flint-Garcia, S.A., A. Thuillet, J. Yu, G. Pressoir, S.M. Romero, S.E. Mitchell, J.F. Doebley, S. Kresovich, M.M. Goodman, and E.S. Buckler. 2005. Maize association population: a high resolution platform for QTL dissection. Plant Journal 44:1054-1064.
7. Bernardo, R., M. Arbelbide, B. Parisseaux, and J. Yu. 2005. In silico QTL mapping with phenotypic, pedigree, and genomic data in plant breeding programs. Proceedings of the 10th International Congress of "The Society for the Advancement of Breeding Researches in Asia and Oceania".
6†. Yu, J., M. Arbelbide, and R. Bernardo. 2005. Power of in silico QTL mapping from phenotypic, pedigree, and marker data in a hybrid breeding program. Theoretical and Applied Genetics 110:1061-1067.
5†. Yu, J., and R. Bernardo. 2004. Metabolic control analysis as a mechanism for maintaining genetic variance during advanced cycle breeding. Theoretical and Applied Genetics 108:1614-1619.
4. Yu, J., and R. Bernardo. 2004. Changes in genetic variance during advanced cycle breeding in maize. Crop Science 44:405-410.
3. Yu, J., M.R. Tuinstra, M.M. Claassen, W.B. Gordon, and M.D. Witt. 2004. Analysis of cold tolerance in sorghum under controlled environment conditions. Field Crops Research 85:21-30.
2. Yu, J., H. Lu, and R. Bernardo. 2001. Inconsistency between SSR groupings and genetic backgrounds of white corn inbreds. Maydica 46:133-139.
1. Yu, J., and M.R. Tuinstra. 2001. Genetic analysis of seedling growth under cold temperatures. Crop Science 41:1438-1443.