F Bie*, Z Wang*, Y Li*, ... YS Huang, W Chen, F Tan, S Gao (2023) Multimodal analysis of cell-free DNA whole-methylome sequencing for cancer detection and localization. Nature Communications
D Zhou*, F Liu*, Y Zheng, L Hu, T Huang#, YS Huang# (2022) Deffini: A family-specific deep neural network model for structure-based virtual screening. Computers in Biology and Medicine
J Hu, C Jiang, YS Huang, ..., W Chen (2022) Processing UMI Datasets at High Accuracy and Efficiency with the Sentieon ctDNA Analysis Pipeline. bioRxiv
X Fan, G Luo, YS Huang# (2021) Accucopy: Accurate and Fast Inference of Allele-specific Copy Number Alterations from Low-coverage Low-purity Tumor Sequencing Data. BMC Bioinformatics.
Z Luo*, X Fan*, Y Su, YS Huang# (2018) Accurity: accurate tumor purity and ploidy inference from tumor-normal WGS data by jointly modelling somatic copy number alterations and heterozygous germline single-nucleotide-variants. Bioinformatics
YS Huang, V Ramensky, et al., Nelson Freimer (2015) Sequencing strategies and characterization of 721 vervet monkey genomes for future genetic analyses of medically relevant traits. BMC Biology
MW Horton, AM Hancock*, YS Huang*, C Toomajian*, S Atwell, A Auton, NW Muliyati, A Platt, FG Sperone, BJ Vilhjálmsson, M Nordborg, JO Borevitz, J Bergelson (2012): Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nature Genetics
YS Huang#, M Horton, BJ. Vilhjálmsson, Ü Seren, D Meng, C Meyer, MA Amer, JO. Borevitz, J Bergelson, M Nordborg (2011): Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies. http://arabidopsis.usc.edu/ Database;
S Atwell*, YS Huang*, BJ Vilhjálmsson*, G Willems*, M Horton, Y Li, D Meng, A Platt, A Tarone, TT. Hu, R Jiang, NW Muliyati, X Zhang, MAi Amer, I Baxter, B Brachi, J Chory, C Dean, M Debieu, J de Meaux, JR. Ecker, N Faure, JM Kniskern, J D. G. Jones, T Michael, A Nemri, F Roux, DE Salt, C Tang, M Todesco, MB Traw, D Weigel, P Marjoram, JO Borevitz, J Bergelson, M Nordborg (2010): Genome-wide association study of 107 phenotypes in a common set of Arabidopsis thaliana inbred lines. Nature
A Platt, M Horton*, YS Huang*, Y Li*, A Anastasio, NW Mulyati, J Ågren, O Bossdorf, D Byers, K Donohue, M Dunning, E Holub, A Hudson, V Le Corre, O Loudet, F Roux, N Warthmann, D Weigel, L Rivero, R Scholl, M Nordborg, J Bergelson, JO. Borevitz (2010): The Scale of Population Structure in Arabidopsis thaliana. Plos Genetics
Y Huang*, H Li*, H Hu, X Yan, MS. Waterman, H Huang and XJ Zhou (2007): Systematic discovery of functional modules and context-specific functional annotation of human genome. Bioinformatics (ISMB 2007)
The complete publications and updated citations could be found at Google Scholar.