Conferences

Extreme-scale many-against-many protein similarity search.
Selvitopi O., Ekanayake S., Guidi G., Awan M., Pavlopoulos GA., Azad A., Kyrpides N., Oliker L., Yelick K., Buluç A..
IEEE/ACM SC22: International Conference for High Performance Computing, Networking, Storage and Analysis, Dallas, TX, US, 2022, pp. 1-12.
ACM Gordon Bell Prize award finalist [Link] [ACM Gordon Bell Prize award finalist]

PASTIS: Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices.
Selvitopi O, Ekanayake S, Guidi G, Pavlopoulos GA, Azad A, Buluc A..
SC20: International Conference for High Performance Computing, Networking, Storage and Analysis, November 2020. [Link] [YouTube]

OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction.
Pafilis E, Pavlopoulos GA, Satagopam V, Papanikolaou N, Horn H, Arvanitidis C, Jensen L, Schneider R, Iliopoulos I..
13th IEEE International Conference on Bioinformatics and Bioengineering (BIBE 2013), 10–13 Nov 2013, Chania, Crete, Greece. [Link]

A simple genetic algorithm for cancer biomarker mining.
Popovic D, Sifrim A, Pavlopoulos GA, Moreau Y, De Moor B..
PRIB 2012, Lecture Notes in Computer Science, 7632, pp. 222-232, Springer (2012). [Link]

Visualizing High Dimensional Datasets Using Parallel Coordinates: Application to Gene Prioritization.
Boogaerts T, Tranchevent LC, Pavlopoulos GA, Aerts J, Vandewalle J..
12th IEEE International Conference on Bioinformatics and Bioengineering (BIBE 2012), Nov. 2012, pp. 1-7, Larnaca, Cyprus. [Link]

Mining cell cycle-related literature using support vector machines.
Soldatos TG, Pavlopoulos GA.
SETN 2012, Lecture Notes in Computer Science, 7297, pp. 278-284. Springer, Heidelberg (2012). [Link]

Towards better prioritization of epigenetically modified DNA regions.
Iacucci E, Popovic D, Pavlopoulos GA, Tranchevent LC, De Moor B, Moreau Y..
SETN 2012, Lecture Notes in Computer Science, 7297, pp. 270-277. Springer, Heidelberg (2012). [Link]

An enhanced Markov clustering method for detecting protein complexes.
Moschopoulos CN, Pavlopoulos GA, Likothanassis SD, Kossida S..
8th IEEE International Conference on Bioinformatics and Bioengineering (BIBE 2008), 8–10 October 2008, Athens, Greece. [Link]