Journal Articles
40. Renoz F, Ambroise J, Bearzatto B, Fakhour S, Parisot N, Ribeiro Lopes M, Gala JL, Calevro F and Hance T. The di-symbiotic systems in the aphids Sipha maydis and Periphyllus lyropictus provide a contrasting picture of recent co-obligate nutritional endosymbiosis in aphids. Microorganisms. 2022 10(7), 1360. doi:10.3390/microorganisms10071360 [IF: 4.926]
39. Parisot N*, Vargas Chávez C*, Goubert C*, et al. The transposable element-rich genome of the cereal pest Sitophilus oryzae. BMC Biol. doi:10.1186/s12915-021-01158-2 [IF: 6.765]
38. Huygens C, Ribeiro Lopes M, Gaget K, Duport G, Peignier S, De Groef S, Parisot N, Calevro F, Callaerts P. Evolutionary diversification of insulin-related peptides (IRPs) in aphids and spatiotemporal distribution in Acyrthosiphon pisum. Insect Biochem Mol Biol. 2021 Oct 16:103670. doi:10.1016/j.ibmb.2021.103670 [IF: 4.714]
37. Ribeiro Lopes M, Parisot N, Gaget K, Huygens C, Peignier S, Duport G, Orlans J, Charles H, Baatsen P, Jousselin E, Da Silva P, Hens K, Callaerts P and Calevro F. Evolutionary novelty in the apoptotic pathway of aphids. PNAS. 2020 Dec 7:202013847. doi:10.1073/pnas.2013847117 [IF: 9.504]
36. Maire J, Parisot N, Galvao Ferrarini M, Vallier A, Gillet B, Hughes S, Balmand S, Vincent-Monégat C, Zaidman-Rémy A and Heddi A. Spatial and morphological reorganization of endosymbiosis during metamorphosis accommodates adult metabolic requirements in a weevil. PNAS. 2020 Aug 11;117(32):19347–58. doi:10.1073/pnas.2007151117 [IF: 9.504]
35. Rispe C, Legeai F, Nabity P D, et al. The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. BMC Biol. 2020 Jul 23;18(1):90. doi:10.1186/s12915-020-00820-5 [IF: 6.765]
34. Oeyen JP, Baa-Puyoulet P, Benoit JB, et al. Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera. Genome Biol Evol. 2020 May 22. doi:10.1093/gbe/evaa106 [IF: 3.940]
33. Consuegra J, Grenier T, Baa-Puyoulet P, Rahioui I, Akherraz H, Gervais H, Parisot N, Da Silva P, Charles H, Calevro F and Leulier F. Drosophila-associated bacteria differentially shape the nutritional requirements of their host during juvenile growth. PLoS Biol. 2020 Mar;18(3):e3000681. doi:10.1371/journal.pbio.3000681 [IF: 8.386]
32. Panfilio KA, Vargas Jentzsch IM, Benoit JB et al. Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. Genome Biol. 2019, 20, 64. doi: 10.1186/s13059-019-1660-0 [IF: 13.214]
31. Maire J, Vincent-Monégat C, Balmand S, Vallier A, Hervé M, Masson F, Parisot N, Vigneron A, Anselme C, Perrin J, Orlans J, Rahioui I, Da Silva P, Fauvarque MO, Mengin-Lecreulx D, Zaidman-Rémy A and Heddi A. Weevil pgrp-lb prevents endosymbiont TCT dissemination and chronic host systemic immune activation. PNAS. 2019, 341, 201821806. doi:10.1073/pnas.1821806116 [IF: 9.504]
30. Parisot N, Colella S, Simonet P, Gaget K, Duport G, Baa-Puyoulet P, Rahbé Y, Charles H, Febvay G, Callaerts P and Calevro F. Bacteriocyte reprograming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum. Frontiers in Invertebrate Physiology. 2018, 9:1498. doi: 10.3389/fphys.2018.01498 [IF: 3.394]
29. Royet K, Parisot N, Rodrigue A, Gueguen E and Condemine G. Identification by Tn‐seq of Dickeya dadantii genes required for survival in chicory plants. Molecular Plant Pathology. 2018, 66:5575. doi:10.1111/mpp.12754 [IF: 4.188]
28. Simonet P, Gaget K, Balmand S, Ribeiro Lopes M, Parisot N, Buhler K, Duport G, Vulsteke V, Febvay G, Heddi A, Charles H, Callaerts P and Calevro F. Bacteriocyte cell death in the pea aphid/Buchnera symbiotic system. PNAS. 2018 115: E1819–E1828. doi:10.1073/pnas.1720237115 [IF: 9.504]
27. Belkorchia A, Pombert JF, Polonais V, Parisot N, Delbac F, Brugère JF, Peyret P, Gaspin C and Peyretaillade E. Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes. DNA Res. 2017 24 (3): 251-260. doi:10.1093/dnares/dsx002 [IF: 5.415]
26. Comtet-Marre S, Parisot N, Lepercq P, Chaucheyras-Durand F, Mosoni P, Peyretaillade E, Bayat R A, Shingfield K J, Peyret P and Forano F. Metatranscriptomics Reveals the Active Bacterial and Eukaryotic Fibrolytic Communities in the Rumen of Dairy Cow Fed a Mixed Diet. Front Microbio. 2017 Jan 31;8(e6650):32. doi:10.3389/fmicb.2017.00067 [IF: 4.019]
25. Simonet P, Gaget K, Parisot N, Duport G, Rey M, Febvay G, Charles H, Callaerts P, Colella S and Calevro F. Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids. Sci Rep. 2016 Oct 3;6:34321. doi:10.1038/srep34321 [IF: 4.122]
24. Ribière C, Peyret P, Parisot N, Darcha C, Déchelotte PJ, Barnich N, Peyretaillade E and Boucher D. Oral exposure to environmental pollutant benzo[a]pyrene impacts the intestinal epithelium and induces gut microbial shifts in murine model. Sci Rep. 2016, 6:31027. doi:10.1038/srep31027 [IF: 4.122]
23. Baa-Puyoulet P, Parisot N, Febvay G, Huerta-Cepas J, Vellozo AF, Gabaldón T, Calevro F, Charles H and Colella S. ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. Database. 2016, baw081. doi:10.1093/database/baw081 [IF: 3.978]
22. Guilhen C, Charbonnel N, Parisot N, Gueguen N, Iltis A, Forestier C, and Balestrino D: Transcriptional profiling of Klebsiella pneumoniae defines signatures for planktonic, sessile and biofilm-dispersed cells. BMC Genomics 2016, 17(1):237. doi:10.1186/s12864-016-2557-x [IF: 3.730]
21. Biderre-Petit C, Dugat-Bony E, Mege M, Parisot N, Adrian L, Moné A, Denonfoux J, Peyretaillade E, Debroas D, Boucher D and Peyret P: Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes. PLoS One 2016. 11, e0145558. doi:10.1371/journal.pone.0145558 [IF: 2.766]
20. Masson F, Moné Y, Vigneron A, Vallier A, Parisot N, Vincent-Monegat C, Balmand S, Carpentier M-C, Zaidman-Rémy A and Heddi A: Weevil endosymbiont dynamics is associated with a clamping of immunity. BMC Genomics 2015. 16, 819. doi:10.1186/s12864-015-2048-5 [IF: 3.730]
19. Belkorchia A, Gasc C, Polonais V, Parisot N, Gallois N, Ribière C, Lerat E, Gaspin C, Pombert JF, Peyret P and Peyretaillade E: The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes. PLoS One 2015. 10(9), e0139075 doi:10.1371/journal.pone.0139075 [IF: 2.766]
18. Gasc C, Ribière C, Parisot N, Beugnot R, Defois C, Petit-Biderre C, Boucher D, Peyretaillade E and Peyret P: Capturing prokaryotic dark matter genomes. Res. Microbiol. 2015. 166, 814–830. doi:10.1016/j.resmic.2015.06.001 [IF: 2.372]
17. Cébron A, Beguiristain T, Bongoua-Devisme J, Denonfoux J, Faure P, Lorgeoux C, Ouvrard S, Parisot N, Peyret P, Leyval C: Impact of clay mineral, wood sawdust or root organic matter on the bacterial and fungal community structures in two aged PAH-contaminated soils. Environ Sci Pollut Res Int. 2015. 22, 13724-13738. doi:10.1007/s11356-015-4117-3 [IF: 2.800]
16. Bragalini C, Ribière C, Parisot N, Vallon L, Prudent E, Peyretaillade E, Girlanda M, Peyret P, Marmeisse R, Luis P: Solution Hybrid Selection Capture for the Recovery of Functional Full-Length Eukaryotic cDNAs From Complex Environmental Samples. DNA Res. 2014. 21, 685-694. doi:10.1093/dnares/dsu030 [IF: 5.415]
15. Parisot N*, Pelin A*, Gasc C, Polonais V, Belkorchia A, Panek J, El Alaoui H, Biron DG, Brasset E, Vaury C, Peyret P, Corradi N, Peyretaillade E, Lerat E: Microsporidian genomes harbour a diverse array of transposable elements that demonstrate an ancestry of horizontal exchange with metazoans. Genome Biol Evol 2014, 6(9), 2289–2300. doi:10.1093/gbe/evu178 [IF: 3.940]
14. Girault G, Parisot N, Peyretaillade E, Peyret P, Derzelle S: Draft Genomes of Three Strains Representative of the Bacillus anthracis Diversity Found in France. Genome Announc 2014, 2:e00736–14. doi:10.1128/genomeA.00736-14
13. Peyretaillade E, Boucher D, Parisot N, Gasc C, Butler R, Pombert JF, Lerat E, Peyret P: Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems. Heredity 2014. 114, 441-449. doi:10.1038/hdy.2014.78 [IF: 3.872]
12. Borrel G*, Parisot N*, Harris HM, Peyretaillade E, Gaci N, Tottey W, Bardot O, Raymann K, Gribaldo S, Peyret P, O Toole PW, Brugère J-F: Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine. BMC Genomics 2014, 15:679. doi:10.1186/1471-2164-15-679 [IF: 3.730]
11. Panek J, El Alaoui H, Mone A, Urbach S, Demettre E, Texier C, Brun C, Zanzoni A, Peyretaillade E, Parisot N, Lerat E, Peyret P, Delbac F, Biron DG: Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae. PLoS One 2014, 9:e100791. doi:10.1371/journal.pone.0100791 [IF: 2.766]
10. Jaziri F*, Parisot N*, Abid A, Denonfoux J, Ribière C, Gasc C, Boucher D, Brugère J-F, Mahul A, Hill DRC, Peyretaillade E, Peyret P: PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification. Database 2014, 2014:bau036. doi:10.1093/database/bau036 [IF: 3.978]
9. Jaziri F, Peyretaillade E, Missaoui M, Parisot N, Cipière S, Denonfoux J, Mahul A, Peyret P, Hill DRC: Large Scale Explorative Oligonucleotide Probe Selection for Thousands of Genetic Groups on a Computing Grid: Application to Phylogenetic Probe Design Using a Curated Small Subunit Ribosomal RNA Gene Database. The Scientific World Journal 2014, 2014:9–9. doi:10.1155/2014/350487 [IF: 1.219]
8. Borrel G, Harris HMB, Parisot N, Gaci N, Tottey W, Mihajlovski A, Deane J, Gribaldo S, Bardot O, Peyretaillade E, Peyret P, O'Toole PW, Brugère J-F: Genome Sequence of “Candidatus Methanomassiliicoccus intestinalis” Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces. Genome Announc 2013, 1. doi:10.1128/genomeA.00453-13
7. Tottey W, Denonfoux J, Jaziri F, Parisot N, Missaoui M, Hill DRC, Borrel G, Peyretaillade E, Alric M, Harris HMB, Jeffery IB, Claesson MJ, O'Toole PW, Peyret P, Brugère J-F: The Human Gut Chip “HuGChip”, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level. PLoS One 2013, 8:e62544. doi:10.1371/journal.pone.0062544 [IF: 2.766]
6. Denonfoux J*, Parisot N*, Dugat-Bony E, Biderre-Petit C, Boucher D, Morgavi DP, Le Paslier D, Peyretaillade E, Peyret P: Gene capture coupled to high-throughput sequencing as a strategy for targeted metagenome exploration. DNA Res 2013, 20:185–196. doi:10.1093/dnares/dst001 [IF: 5.415]
5. Borrel G, Harris HMB, Tottey W, Mihajlovski A, Parisot N, Peyretaillade E, Peyret P, Gribaldo S, O'Toole PW, Brugère J-F: Genome Sequence of “Candidatus Methanomethylophilus alvus” Mx1201, a Methanogenic Archaeon from the Human Gut Belonging to a Seventh Order of Methanogens. J Bacteriol 2012, 194:6944–6945. doi:10.1128/JB.01867-12 [IF: 3.219]
4. Peyretaillade E*, Parisot N*, Polonais V, Terrat S, Denonfoux J, Dugat-Bony E, Wawrzyniak I, Biderre-Petit C, Mahul A, Rimour S, Goncalves O, Bornes S, Delbac F, Chebance B, Duprat S, Samson G, Katinka MD, Weissenbach J, Wincker P, Peyret P: Annotation of microsporidian genomes using transcriptional signals. Nat Commun 2012, 3:1137. doi:10.1038/ncomms2156 [IF : 12.353]
3. Dugat-Bony E, Peyretaillade E, Parisot N, Biderre-Petit C, Jaziri F, Hill DRC, Rimour S, Peyret P: Detecting unknown sequences with DNA microarrays: explorative probe design strategies. Environ Microbiol 2012, 14:356–371. doi:110.1111/j.1462-2920.2011.02559.x [IF: 5.481]
2. Parisot N, Denonfoux J, Dugat-Bony E, Peyret P, Peyretaillade E: KASpOD--a web service for highly specific and explorative oligonucleotide design. Bioinformatics 2012, 28:3161–3162. doi:10.1093/bioinformatics/bts597 [IF : 7.307]
1. Peyretaillade E, Alaoui El H, Diogon M, Polonais V, Parisot N, Biron DG, Peyret P, Delbac F: Extreme reduction and compaction of microsporidian genomes. Res Microbiol 2011, 162:598–606.doi:10.1016/j.resmic.2011.03.004 [IF: 2.372]
Proceedings
1. Jaziri F, Hill DRC, Parisot N, Denonfoux J, Dugat-Bony E, Peyretaillade E, Peyret P: MetaExploArrays: A Large-Scale Oligonucleotide Probe Design Software for Explorative DNA Microarrays. IEEE Computer Society; PDCAT '12: Proceedings of the 2012 13th International Conference on Parallel and Distributed Computing, Applications and Technologies, Beijing, 664-671, 2012. doi:10.1109/PDCAT.2012.94
Book chapters
5. Ribeiro Lopes M, Simonet P, Duport G, Gaget K, Balmand S, Sugio A, Simon JC, Parisot N, Calevro F. (2021). Isolation of insect bacteriocytes as a platform for transcriptomic analyses. Methods in Molecular Biology – 2021;2170:185–98.
4. Ribeiro Lopes M, Parisot N, Callaerts P, Calevro F. (2019) Genetic Diversity of the Apoptotic Pathway in Insects. In: Evolution, Origin of Life, Concepts and Methods, pp. 253–285. Springer International Publishing, Cham (Editor: Pontarotti P).
3. Ribière C, Beugnot R, Parisot N, Gasc C, Defois C, Denonfoux J, Boucher D, Peyretaillade E and Peyret P. (2016). Targeted Gene Capture by Hybridization to Illuminate Ecosystem Functioning. Methods Mol. Biol. 1399, 167–182.
2. Parisot N, Peyretaillade E, Dugat-Bony E, Denonfoux J, Mahul A and Peyret P. (2016). Probe Design Strategies for Oligonucleotide Microarrays. Methods Mol. Biol. 1368, 67–82.
1. Parisot N, Denonfoux J, Dugat-Bony E, Peyretaillade E and Peyret P. (2014). Software tools for the selection of oligonucleotide probes for microarrays. Microarrays: Current Technology, Innovations and Applications, Horizon Scientific Press (Editor: He Z).