[17] C. Fang, V.-D. Nguyen, D. Wassermann, J.-R. Li, Diffusion MRI simulation of realistic neurons with SpinDoctor and the Neuron Module, NeuroImage, 2020.

[16] V. Menon, G. Gallardo, M. A Pinsk, V.-D. Nguyen, J.-R. Li, W. Cai, D. Wassermann, Microstructural organization of human insula is linked to its macrofunctional circuitry and predicts cognitive control. Elife 2020. PDF

[15] J.-R. Li, T. N. Tran, V.-D. Nguyen, Practical computation of the diffusion MRI signal of realistic neurons based on Laplace eigenfunctions. Accepted. NMR in Biomedicine. 2020.

[14] V.-D. Nguyen, M. Leoni, T. Dancheva, J. Jansson, J. Hoffman, D. Wassermann, J.-R. Li, Portable simulation framework for diffusion MRI. Journal of Magnetic Resonance. 2019. PDF

[13] J.-R. Li, V.-D. Nguyen, T. N. Tran, J. Valdman, C.-B. Trang, K. V. Nguyen, D. T. S. Vu, H. A. Tran, H. T. A. Tran, T. M. P. Nguyen SpinDoctor: a Matlab toolbox for diffusion MRI simulation. Neuroimage. 2019. PDF

[12] V.-D. Nguyen, J. Jansson, H. T. A. Tran, J. Hoffman, J.-R. Li. Diffusion MRI simulation in thin-layer and thin-tube media using a discretization on manifolds. Journal of Magnetic Resonance. 2019. PDF

[11] V.-D. Nguyen, J. Jansson, J. Hoffman, J.-R. Li. A partition of unity finite element method for computational diffusion MRI.

Journal of Computational Physics. 2018. PDF

[10] V.-D. Nguyen, Johan Jansson, Anders Goude, Johan Hoffman, Direct Finite Element Simulation of the turbulent flow past a vertical axis wind turbine, Renewable Energy, 2019.

[9] B. Tie, A.-S. Mouronval, V.-D. Nguyen, L. Series, D. Aubry, A unified variational framework for the space discontinuous Galerkin method for elastic wave propagation in anisotropic and heterogeneous media, Computer Methods in Applied Mechanics and Engineering, ISSN 0045-7825, April 2018.

[8] F. Caubet, H. Haddar, J.-R. Li, and V.-D. Nguyen, New Transmission Condition Accounting For Diffusion Anisotropy In Thin Layers Applied To Diffusion MRI, ESAIM: M2AN 2016. PDF 

[7] H. T. Nguyen, D. Grebenkov, V.-D. Nguyen, C. Poupon, D. Le Bihan, J.-R. Li. Parameter estimation using macroscopic diffusion MRI signal models, Physics in Medicine and Biology. 60 3389 (2015). PDF 

[6] V.-D. Nguyen, D. S. Grebenkov, D. Le Bihan, and J.-R. Li, Numerical study of a cylinder model of diffusion MRI signal for neuronal dendrite trees, Journal of Magnetic Resonance, ISSN 1090-7807 (2015). PDF 

[5] J.-R. Li, H. T. Nguyen, V.-D. Nguyen, H. Haddar, J. Coatleven and D. Le Bihan, Numerical study of a macroscopic finite pulse model of the diffusion MRI signal, Journal of Magnetic Resonance, ISSN 1090-7807 (2014). PDF

[4] D. S. Grebenkov, V.-D. Nguyen, and J.-R. Li, Exploring diffusion across permeable barriers at high gradients. I. Narrow pulse approximation, Journal of Magnetic Resonance, ISSN 1090-7807 (2014). PDF

[3] V.-D. Nguyen, J.-R. Li, D. S. Grebenkov, and D. Le Bihan, A finite elements method to solve the Bloch-Torrey equation applied to diffusion magnetic resonance imaging, J. Comput. Phys. 263, 283-302 (2014). PDF

[2] V.-D. Nguyen, J.-R. Li, D. S. Grebenkov, and D. Le Bihan, Modeling the diffusion magnetic resonance imaging signal inside neurons, J. Phys.: Conf. Ser. 490 012013 (2014). PDF

[1] V.-D. Nguyen, D. S. Grebenkov, C. Poupon, D. Le Bihan, and J.-R. Li, Effective diffusion tensor computed by homogenization, Diff. Fundam. 18 (9), 1-6 (2013). PDF

[6] V.-D. Nguyen, C. Fang, D. Wassermann, J.-R. Li. Diffusion MRI simulation of realistic neurons with SpinDoctor and the Neuron Module. ISMRM - 28th Annual Meeting & Exhibition, Apr 2020, Sydney, Australia.

[5] D. Wassermann, V.-D. Nguyen, G. G.-Diez, J.-R. Li, W. Cai, and V. Menon, Sensing Spindle Neurons in the Insula with Multi-shell Diffusion MRI, ISMRM 2018. PDF

[4]  V.-D. Nguyen et al., "A fluid-structure interaction model with weak slip velocity boundary conditions on conforming internal interfaces" conference paper , ECCM-ECFD 2018.

[3]  J. Jansson, V.-D. Nguyen,  M. Margarida, D. Castanon, L. Saavedra, E. Krishnasamy, A. Goude and J. Hoffman, Direct finite element simulation of turbulent flow for marine based renewable energy. Companion paper to F. Wendt, et. al. International energy agency ocean energy systems task 10 wave energy converter modeling verification and validation. In 12th European Wave and Tidal Energy Conference, 2017.

[2]  V. D. Nguyen, J. Jansson, M. Leoni, B. Janssen, A. Goudez, and J. Hoffman, Modelling of rotating vertical axis turbines using a multiphase finite element method, MARINE 2017. PDF

[1]  V. D. Nguyen, J. Jansson, J. Hoffman, A FENICS-HPC framework for multi-compartment Bloch-Torrey models, ECCOMAS Congress 2016. PDF

[10] V. D. Nguyen, J. Jansson, N. C. Degirmenci, J. Hoffman, An XFEM Approach for Mesh Conforming Interface Conditions with FEniCS-HPC, FEniCS'18

[9] M. Moragues, D. Castanon, J. Jansson, L. Saavedra, V.-D. Nguyen , N. C. Degirmenci, E. Krishnasamy, and J. Hoffman, Simulation of the HarshLab floating platform for offshore experimentation using FEniCS-HPC, 19h International Conference on Finite Elements in Flow Problems - FEF 2017

[8] V.- D. Nguyen  A Nitsche approach for weak slip boundary conditions on confirming meshes,  Webinar, Stockholm, Sweden 2017. Presentation 

[7] V.- D. Nguyen, N.-C. Degirmenci, B. Janssen , J. Jansson, A. Goude, T. Bakhos, J. Hoffman  A Nitsche approach for weak slip boundary conditions to simulate the fluid-structure interaction of rotating vertical axis turbines,  X-DMS 2017, Umeå, Sweden 2017. Presentation

[6] V.-D. Nguyen, J. Jansson, M. Leoni, B. Janssen, A. Goudez, and J. Hoffman, Modelling of rotating vertical axis turbines using a multiphase finite element method, MARINE2017, Nantes, France 2017. Presentation 

[5] M. Leoni, J. Hoffman, J. Jansson, V.-D. Nguyen, and J. Spühler Adaptive Turbulence Simulations with Moving Domains and Multi-Phase Flow, with Applications in Biomechanics and Renewable Energy, CSE17, Atlanta, USA 2017. 

[4] V.-D. Nguyen, J. Jansson, J. Hoffman and J.-R. Li A FEniCS-HPC Framework for Simulating Diffusion in Heterogeneous Media, CSE17, Atlanta, USA 2017. Presentation 

[3] V.-D. Nguyen, J. Jansson, J. Hoffman, A FENICS-HPC framework for multi-compartment Bloch-Torrey models, ECCOMAS Congress, Greece 2016.  Presentation

[2] J. Jansson, J. Spühler, N. C. Degirmenci, V.-D. Nguyen, J. Hoffman, Framework for Fluid-Structure Interaction with Contact and its Applications in Biomechanics, ECCOMAS 2016, Greece 2016.

[1] V.-D. Nguyen, D. S. Grebenkov, C. Poupon, D. Le Bihan, and J.-R. Li, Effective diffusion tensor computed by homogenization, In Proceedings 20th ISMRM Conference, Melbourne, 2012. PDF

[2] V.-D. Nguyen, A finite elements method to solve the Bloch-Torrey equation applied to diffusion magnetic resonance imaging of biological tissues. Ph. D. thesis in Applied Mathematics, Ecole Polytechnique X, 2014.

[1] V.-D. Nguyen, High Performance Finite Element Methods with Application to Simulation of Vertical Axis Wind Turbines and Diffusion MRI, Ph. D. thesis in Computer Science, KTH, 2019.

[6] Comparison of Direct Finite Element Simulation with Actuator Line Models and Vortex Models for Simulation of Turbulent Flow Past a Vertical Axis wind Turbine, 2019.

[5] Pre-processing for the FEniCS with Salome and visualization, Python course project, Nov 2016

[4] Visualization of Earthquake data by VTK, Nov 2015

[3] Study of the ADER-DG method and its implementation in MATLAB for 1D elastic wave equations, May 2015 

[2] Implementation of MPI-based solvers for the Poisson equation on Cartesian grids, summer school project, Sept 2015.

[1] A numerical method to solve the incompressible Navier-Stokes equations for moving turbines, DD2365 course project, June 2016