PUBLICATIONS

Selected Publications (Visit Google Scholar Profile for complete list)

📄 ATP-Driven Allosteric Regulation of 14-3-3 (The FASEB Journal, 2025)

📄 Multimodal cell maps as a foundation for structural and functional genomics (Nature, 2025)

📄 The molecular architecture of the nuclear basket. Singh*, Soni*, Hutchings* et. al. Cell 2024

📄 COCONUT: An analysis of coiled-coil regions in proteins. Soni and Madhusudhan, BioRxiv 2024

📄 Methods for molecular modeling of protein complexes, Methods in Mol. Biol. 2021.

📄 Predicting and designing therapeutics against the Nipah virus, PLOS Neg. Trop. Dis., 2019

📄 In silico methods for design of biological therapeutics. Methods, 2017

📄 Computational modeling of protein assemblies. Soni and Madhusudhan Curr. Opi. Str. Biol 2017

📄 High-resolution structure of the presynaptic RAD51 filament on single-stranded DNA by electron cryo-microscopy. Nucleic Acids Research (NAR), 2016

📄 Molecular Mechanism Underlying ATP-Induced Conformational Changes in the Nucleoprotein Filament of Mycobacterium smegmatis RecA, Biochemistry, 2016

📄 Novel tetra-peptide insertion in Gag-p6 ALIX-binding motif in HIV-1 subtype C associated with protease inhibitor failure in Indian patients, AIDS, 2014

📄 Biophysical properties of intrinsically disordered p130Cas substrate domain—implication in mechanosensing, PLOS Computational Biology, 2014