(5) Ferez Nallaseth and Other Reader's Comment Threads: Social Media, NYT On (A) Cancers, Health Policy, (B) Brain & Mind - Neurosciences, (C) Related Articles, Links , Website: Ferez'nSquashDocs

Updated:19th June, 2016

FULL TEXT LINK:What is the Life Sciences Institute of New Jersey? Why and how does it exist? What are its goals? Ferez S. Nallaseth, PhD, JMB Omics Nallaset, Mol Biol 2015, 4: 3, 2168-9547-1000130.php?aid=60692, http://www.omicsgroup.org/journals/doi: 10.4172/2168-9547.1000130

PDF LINK: http://www.omicsgroup.org/journals/what-is-the-life-sciences-institute-of-new-jersey-why-and-how-does-itexist-what-are-its-goals-2168-9547-1000130.pdf

Is There a Role for an Evolutionary Genetics Based Rational Health Policy In Global Biomedical, Health and Economic Policies? Nallaseth.Final.mbl-14-e118. 8.27.2014.pdf

LinkedIn Pulse Post - Asilomar Revisited! The debate on the non-issue that is CrispR/Cas9 & why it detracts from the basic obligation of Humankind!

LinkedIn  PulsePost-Updated! What Is Lost In Confronting Global Health & Economic Crises? Scale! Science & Cost - Benefit Ratios Overwhelmingly Support Marshall Plan Based Preemption! 2.9.2016.pdf

NYT On (A) Cancers, Health Policy

http://www.nytimes.com/2013/05/02/health/dna-research-points-to-new-insight-into-cancers.html?hp

Comment (in response to the above and other articles on NYT/LinlkedIn/Twitter) - Proposal for A Rational Health Policy:

Objective: Bring a paradigm shift in the Biomedical Sciences from perpetuating the management of consequences (Pathologies, etc..) to pre-empting the Mutational causes of disease states. How? By Systematization and control of Mammalian Chromosome and Genome Biology in Homeostasis and Development with the coverage of all ~6 billion pairs of Nucleotides/Diploid Genome in all ~200 Cell types of all ~10-40 trillion Cells/average Human, from which these Mutations escape.

A dawning that should have occurred with only a small fraction of decades of work! Next - understand and preempt the causes of these 'fingerprints' (mutations?) which is their escape from Genetic Mechanisms maintaining Chromosomes/Genomes in Mammalian Homeostasis and Development. How? By including Evolutionary Diversity (based induction of dysfunctional Chromosome/Genome Biology in Hybrid Zones, etc..), Hybrid Zones and Genetics,  hundreds of Genomic Targets, traditional (Orthology, Mapping, Synteny, RI/CC mice, etc..) and contemporary (e.g. miRNAs, Proteomics, Epigenomics, Transcriptomics, Systems, etc..)Scientific methods, assembling Mutation Frequency Histograms and re-configuring perspectives on the Genome from an assembly of Transcription Units to Targets of Regulation of Chromosome/Genome Biology in Systematizing these networks! We need to force a paradigm shift in the Biomedical Sciences from intervention at and cataloging of 'after the mutational facts' (i.e. the consequences of disease which are various Pathologies, symptoms, etc...' ) to  'before the fact preemption of causes of disease i.e. mutations' . To achieve this we need an International Institute of Functional Mammalian Chromosome and Genome Biology assembling tools (e.g. the above methods developed) on a par with diploid Synthetic Lethal Analysis by Microarray (dSLAM) in Yeast.

Conservatively (e.g. Translocations, Aneuploidies, Multifactorials, Mitochondrial diseases, home care costs of Neurodegenerative diseases, etc.. are not included!) costs of more than 6000 monogenic diseases are estimated at tens of trillions of dollars per year. Where is the money to be found for this endeavor? From a fraction of a percent of the Research Budgets of all the National and International, Federal, State Departments and Private Funding Agencies that use DNA and Scientists trained by Public Funds - i.e. ALL! From corporations that spew Mutagens and Carcinogens andthat use DNA and Scientists trained by Public Funds - i.e. ALL! And finally from Sin Taxes (smoking, etc.. that mutate DNA - i.e ALL)! This would secure in perpetuity funding separate from current sources at a level of ~$20 billion dollars or ~ NASA's budget for the International Institute of Functional Mammalian Chromosome & Genome Biology. Of course, this does not mean that the ongoing revolution in the Life Sciences e.g. Next Generation Sequencing, Stem Cell Replacement Therapy, Systems in Brain/Mind, Neurogenesis, Embryogenesis, Structure-function relationships, etc...need be suspended! Just supplemented! What are the payoff rates? Once a threshold of data is attained, perhaps sooner than is estimable from current perspectives, as was so dramatically shown by NGS, their application will lead to the decrease in new cases i.e.  over time. What is the return on investment? Conservatively a few billions of dollars will end up saving tens of trillions of dollars and yield a paradigm shift in the Biomedical Sciences to boot! 

We are fully in agreement with others on the need for engaging "Citizen Scientists" in this process. However, as things stand, in our rush to ameliorate the various Pathologies of Patients we unwittingly perpetuate the use of their money for disease management and their afflictions for reagents. This is needless, as shown earlier, there are more than enough resources for multiple parallel approaches eventually effecting the necessary paradigm shift to pre-emption of diseases. There is little doubt as to the choices that Patients would make! Can you expect to focus on (after the fact) consequences (Pathologies, etc..) of disease and wake up one day and understand and preempt their (before the fact) Mutational (necessary but possibly insufficient) causes? There are other reasons for resistance to these ideas/proposals besides the necessity for an immediate response to Patient needs! What are they?

They are (1) lack of Scientific Interest and Recognition required to propel studies e.g. Nobel Prize have already been awarded in the relevant fields, (2) the notion that all modern methods e.g.Genomics/Stem Cells are a panacea while all older methods such as Classical/Evolutionary Genetics are passe. Even the immensely promising Cell Replacement Therapies with induced Pluripotent Stem Cells (iPS) presume an ongoing recurrence of de novo cases (e.g. Parkinsons Disease, Diabetes, etc..). This despite the former often being limited to 'after the fact' intervention, having no pre-emptive capacity for de novo disease states, being largely retrospective while in contrast the latter will be preemptive, (3) Lack of thought given to the subject by Scientists ranging from Nobel Laureates to Graduate Students, as is obvious from their assertions e.g. (a) diseases are not caused by Mutations in House Keeping Genes (e.g. for DNA replication) - they are caused by Mutations in Specialized Genes (e.g. P53, BRCA1, etc..). This when the latter Genes are substrates for Regulatory Networks of the former Genes!, (b) KNOCKOUTS of 1% of the Genome have supplanted methods for understanding and controlling mutational pathways over the entire Genome in all ~200 cell types in Development and Homeostasis! This when Evolutionary Diversity (a resource derived from billions of years of divergence) based Dysfunctions and scanning of Networks of Alleles maintaining the Genome are wide spectrum and unbiased scans which would much more closely parallel the Mutational Ontogeny of disease states. Targeted searches such as Knockouts in fact complement Evolutionary Diversity based scans as has been so strikingly demonstrated in Model Organisms, e.g. Fruit Flies, Worms, Arabidopsis, etc.. , (4) In this CONCEPTUAL vacuum these mutations are considered (a) to be inevitable and (b) preempting them a far greater cost than allowing them to 'happen'.

And so ironically, Human accomplishments in other areas overcome barriers that are technically, scientifically and economically far larger than the pre-emption of disease states. We (a) approach the explorable limits of Space by sending craft to Mars, studying Stars Light Years away with the Hubble Telescope, etc.. (b) approach the limits of sub-atomic particles in the Large Hadron Collidor (LHC), (c) explore the depths of the Mariana Trench and (b) Map Tectonic Plate movements. All this is achieved while we remaining strikingly and haplessly accepting of this regulatory cauldron in our Genomes that causes a minimum of 6000 (monogenic) diseases at a cost tens of trillions of dollars per year while exacting a massive Human cost as the equivalent of a happening!

How can the Socio-Economic and Political barriers/climate  be overcome? Preferably by enlightenment but with financial and legal tools, e.g. invoking of Eminent Domain, if necessary, to inculcate a civic sense and that of good citizenship! What is more the costs of this difficult decision can be balanced by President Obama's Model for rescuing the Motor Industry in Detroit as well as the Banks and allowing the returns on investment made to be paid off with interest. So in addition to the decreasing rates of disease and Human costs and the relieving of enormous Economic Pressures on the Global Economy, on the scale of trillions of dollars, the savings could perhaps even induce a gradual stimulus! There will be money to be made!!!!

And just in case anyone has not noticed, eventually, all this might just put off e.g. the loss of a 13 year old girl to Leukemia.

(1) Editorial on 8/4/2013

Editorial

Mixed Blessings:

http://www.nytimes.com/2013/08/05/opinion/mixed-blessings.html?ref=global

Mixed Blessings

By THE EDITORIAL BOARD

Published: August 4, 2013 86 Comments

Pity the poor patient who tries to make sense of federal advisory committee reports that appear headed in opposite directions. For at least three decades, Americans have been told that it’s best to detect cancers early, when they are theoretically most curable. So it was not all that surprising when an authoritative advisory group recommended that very heavy smokers get an annual CT scan to check for early signs of lung cancer. It was much more surprising, however, when a separate group of experts suggested that for several cancers — including potential lung cancers — early scans are detecting too many abnormalities that aren’t dangerous and should not be treated.

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Oddly enough, both groups, which issued their recommendations last Monday, may be right.

The recommendation on smokers came from the United States Preventive Services Task Force, independent experts who serve as the federal government’s foremost authority on screening procedures. Screening with chest X-rays, long the standard approach, seldom catches a tumor early enough for surgeons to save a life. In 2010, however, a large clinical trial found that low-dose CT scans, which detect much smaller tumors, could reduce mortality by 16 percent among patients at the highest risk of lung cancer because of their age and smoking history.

That led several prominent medical groups to recommend such screening in high-risk current and former smokers. Now, based primarily on that same study, the Preventive Services Task Force, the final arbiter, has recommended that people ages 55 to 79 who have smoked a pack of cigarettes a day for 30 years or two packs a day for 15 years or the equivalent get annual CT scans. That includes former smokers who have quit within the past 15 years. It estimates that such screening could save 20,000 lives a year, among the 160,000 Americans who die each year of lung cancer.

The task force said it had “moderate certainty” that the screening would produce a “moderate net benefit” in these high-risk smokers but did not know whether the same would be true in lower-risk patients. It gave lung cancer screening a grade of B, on a par with mammography. Under the Affordable Care Act, that would require Medicare and private insurers to pay for the screening tests without any cost to consumers.

Meanwhile, three members of a working group advising the National Cancer Institute, the federal government’s pre-eminent supporter of cancer research, suggested that “overdiagnosis” — the detection of tumors that would not cause illness or death if left unattended — is common in cases of breast, lung, prostate and thyroid cancer. Such overdiagnosis often leads to further tests and biopsies to determine if a tiny tumor looks dangerous, followed by surgery, radiation or chemotherapy to eliminate an abnormality that would never have caused illness. In such cases, the cure is worse than the disease it is trying to prevent.

The group said that, ideally, screening tests should focus on tumors that will cause harm and are more likely to be cured if detected early. But that can’t be done until scientists find better ways to identify which lesions are truly worrisome. The group also proposed renaming some conditions to exclude the word cancer so that patients might be less frightened and less apt to press for unneeded tests and treatments. For instance, the tiny breast tumors called ductal carcinoma in situ would be renamed to exclude the word carcinoma.

Recommendations from both these groups come with uncertainties and unanswered questions. This will put the burden on patients, in consultation with their doctors, to decide whether to get early screening for various cancers and what to do based on the findings.

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A version of this editorial appeared in print on August 5, 2013, on page A16 of the New York edition with the headline: Mixed Blessings.

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(2) NYT-Cancers Share Gene Patterns, Studies Affirm,  By GINA KOLATA Published: May 1, 2013: Comment Email Thread.

Your Comment on DNA Research Points to New Insight Into Cancers

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Ferez Nallaseth <ferez.nallaseth@gmail.com>

2:02 PM (15 hours ago)

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Thank you for having published our comment which is in the rich tradition of open communications, transparency and public debate  (short of cacophony) that characterize pluralistic societies and the NYT. In searching for the reply to this submission, beyond its publication - I could not find any relevant comments.

Ferez S. Nallaseth, Ph.D.

Principal Investigator and Consultant - Life Sciences

Life Sciences Institute

229 Parsons Court

Belle Mead, New Jersey 08502, USA

Tel: 646 283 5163 (M)

       908 431 5069 (H, O)

Skype Address: ferez.nallaseth

Websites:

http://sites.google.com/site/nallasethfs

http://www.google.com/profiles?q=ferez+nallaseth

https://sites.google.com/site/fereznsquashdocs

LinkedIn Profile:

http://www.linkedin.com/pub/ferez-soli-nallaseth/14/2a7/311

Twitter address:

https://twitter.com/fnallase1

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NYTimes.com <comments@nytimes.com>

11:47 AM (17 hours ago)

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The New York Times

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Thank you for participating on NYTimes.com. A reply to your published submission can be found at this link:

http://www.nytimes.com/2013/05/02/health/dna-research-points-to-new-insight-into-cancers.html?comments#permid=68

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Ferez Nallaseth <ferez.nallaseth@gmail.com>

2:02 PM (1 minute ago)

to bounce

Thank you for having published our comment which is in the rich tradition of open communications, transparency and public debate  (short of cacophony) that characterize pluralistic societies and the NYT. In searching for the reply to this submission, beyond its publication - I could not find any relevant comments.

Ferez S. Nallaseth, Ph.D.

Principal Investigator and Consultant - Life Sciences

Life Sciences Institute

229 Parsons Court

Belle Mead, New Jersey 08502, USA

Tel: 646 283 5163 (M)

       908 431 5069 (H, O)

Skype Address: ferez.nallaseth

Websites:

http://sites.google.com/site/nallasethfs

http://www.google.com/profiles?q=ferez+nallaseth

https://sites.google.com/site/fereznsquashdocs

LinkedIn Profile:

http://www.linkedin.com/pub/ferez-soli-nallaseth/14/2a7/311

Twitter address:

https://twitter.com/fnallase1

Your New York Times Inquiry

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customercare@nytimes.com

12:58 PM (22 minutes ago)

to me

Dear Ferez S. Nallaseth,

Thank you for taking the time to write The New York Times.

We want to ensure you that we take our reader’s suggestions and opinions very seriously. We value this feedback and use it to make the New York Times the best it can be.

Please continue to provide us with your feedback so we may strive to serve you better.

Sincerely,

Zack Palmitier

Online Customer Care

1-800-NYTIMES

www.nytimes.com/help

-----Original Message-----

From:  ferez.nallaseth@gmail.com

Sent:  5/2/2013 10:58:27 AM

To:  "Care, Customer"

Subject:  Re: Your New York Times Inquiry

Zack Palmitier

 Online Customer Care

 The New York Times

 www.nytimes.com/help

Dear Zack Palmitier,

The comment was posted, an acknowledgement sent to this email address and after sometime it was removed from the online postings on the NYT. Several subsequent attempts failed to post this comment.

This comment is perfectly valid, in the Public Interest and addresses the enormous misplacement of Public Funds to a process that would be far more productive as listed on our website. The attempt to illustrate this discrepancy in our comment reduces the article to an advertisement and leaves the New York Times responsible for something that it professes undermines Public Debate in a Pluralistic system - censorship!

Sincerely,

 

Ferez S. Nallaseth, Ph.D.

Principal Investigator and Consultant - Life Sciences

Life Sciences Institute

229 Parsons Court

Belle Mead, New Jersey 08502, USA

Tel: 646 283 5163 (M)

        908 431 5069 (H, O)

Skype Address: ferez.nallaseth

Websites:

http://sites.google.com/site/nallasethfs

http://www.google.com/profiles?q=ferez+nallaseth

 https://sites.google.com/site/fereznsquashdocs

LinkedIn Profile:

http://www.linkedin.com/pub/ferez-soli-nallaseth/14/2a7/311

 Twitter address:

https://twitter.com/fnallase1

On Thu, May 2, 2013 at 10:33 AM,   wrote:

 Dear Ferez S. Nallaseth,

 Thank you for contacting NY Times.

 We apologize for any inconvenience you are experiencing.

 Since comments are moderated, they do not appear on the site until they have been approved. Comments are typically posted faster during business hours. Moderation can be less frequent in the evening and on weekends. Comments by Verified Commenters appear on the site without prior moderation. Comments are displayed directly below articles and blog posts. We reserve the right to display comments in a variety of ways, including within the text of articles or in advertisements.

 If there is anything else we can do to help you, please e-mail us at customercare@nytimes.com or call us at 1-800-NYTIMES (1-800-698-4637) from 5 a.m. to midnight Monday-Friday and 5 a.m. to 5 p.m. Saturday & Sunday (ET).

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 -----Original Message-----

 From:  ferez.nallaseth@gmail.com

 Sent:  5/2/2013 10:33:29 AM

 To:  "Care, Customer"

 Subject:  Re: Comments for article on cancer.

 Dear Editor,

 I am concerned that my comments for this article will not be accepted by and posted to the online issues NYT:

 http://www.nytimes.com/2013/05/02/health/dna-research-points-to-new-insight-into-cancers.html?hpw

 The comment:

 A  dawning that should have occurred with only a small fraction of decades  of work! Next - understand & preempt the causes of these  'fingerprints' (mutations?) which is their escape from Mechanisms  maintaining Chromosomes/Genomes in Mammalian Homeostasis &  Development by including Evolutionary Diversity, Hybrid Zones &  Genetics, Histograms, hundreds of Genomic Targets & traditional  Science in Systematizing them! The dawning of the age of Functional  Mammalian Genomics on a par with dSLAM in Yeast.

  less                                                                                                                                                                                                     http://lnkd.in/EzV8KF                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      DNA Research Points to New Insight Into Cancers                                                                                                                                                                                                                                                                                                                                                                                                                                 nytimes.com                                                                                                                                                                           To the surprise of scientists, the  most dangerous cancers of the uterine lining closely resemble the worst  ovarian and breast cancers, raising the tantalizing possibility that the  three deadly cancers might respond to the same...

 If this is not a technical problem, as someone who has studied the issue (http://sites.google.com/site/nallasethfs) and  understands the limitations of the Biomedical Sciences community in it, this I would consider it an unfortunate lapse by a News Medium with the exceptional record of the New York Times.

 Thanks and regards

 Ferez S. Nallaseth, Ph.D.

 Principal Investigator and Consultant - Life Sciences

 Life Sciences Institute

 229 Parsons Court

 Belle Mead, New Jersey 08502, USA

 Tel: 646 283 5163 (M)

         908 431 5069 (H, O)

 Skype Address: ferez.nallaseth

 Websites:

 http://sites.google.com/site/nallasethfs

 http://www.google.com/profiles?q=ferez+nallaseth

  https://sites.google.com/site/fereznsquashdocs

 LinkedIn Profile:

 http://www.linkedin.com/pub/ferez-soli-nallaseth/14/2a7/311

  Twitter address:

 https://twitter.com/fnallase1

NYT On (B) Brain & Mind - Neurosciences

Brain

News about the Brain, including commentary and archival articles published in The New York Times (copy and paste URL below into your browser):

http://topics.nytimes.com/topics/news/health/diseasesconditionsandhealthtopics/brain/index.html

(C) For additional: NYT articles, peer reviewed publications, on Cancer, Public Health Policies, the Brain, Mind, the Neurosciences and the Analytical Nexus of these Sciences with Sports/Squash please visit:

(1) Page 2 of this website - Selected Abstracts, pdfs, PubMed links and Publications

(2) as well as the Website:

Ferez'nSquashDocs

(D) Comments on news articles, social media posts and our Scientific History/Contributions that address 'Proposal for A Rational Health Policy' or the Neurosciences

(D1) Comment on an Article reproduced on the front Page of The Times of India :''Jaw-dropping' breakthrough hailed as landmark in fight against hereditary diseases as Crispr technique heralds genetic revolution' Art.TOI on Crispr-FSN-Ltr-Editor_11.7.13.pdf

(D2) Letter and comment on an OpEd article in the New York Times by Correspondent Maureen Dowd on David Page's work on 'Why the Y?'

http://www.nytimes.com/2013/11/24/opinion/sunday/dowd-why-the-y.html?_r=1&#!.

Letter and comment on an OpEd article entitled 'Why the Y?' by Correspondent Maureen Dowd on Dr. David Page's work. NYT - LiI.corr.1.11.2014.pdf

The links to our publications qouted in the above article (D2) maybe inactive but are re-posted below for convenient access:

(1) Nallaseth-YPos-Sequence InstabilityFunctional Inactivation-MBE-9(2)331-1992.pdf

(2) YPos.Interspecific Backcrosses.Mouse Genetics Mtng .6.22-6.25.2011.pdf

(3) DissDevPhyRelRegMammChBiol.Nallaseth et al.GSA.MOHB-CancerGen.WashingtonDC.6.17.2012.pdf

(D3).Destruction and Restoration of the Y chromosome. UCBerk.Times Of India- FSN comment.1.11.2014 .pdf

(D4) Comments on LinkedIn On Epigenetics of Sex Reversal - Evolutionary Implications. LinkedIn Comments - 9.25.2013.pdf

(D5) THE COMPLETE RESPONSE ON LINKEDIN (Disruptive Digital Darwinism Group) TO PETER SHIMON'S POST - 2014 WHAT SCIENTIFIC IDEA IS READY FOR RETIREMENT? Life Evolves By A Shared Genetic Tool Kit.1.21.14.pdf

(D6) How Academia and Publishing are Destroying Scientific Innovation: a Conversation with (Nobel Laureate) Sydney Brenner, by Dr. Elizabeth Dzeng, Kings Review Magazine/Blog/2014/02/24/

(D7) The Squash.com.au Daily http://paper.li/Squashcomau/1350014352 Squash.com.au (@Squashcomau) mentioned you on Twitter!

Inbox

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Squash.com.au (via Twitter)

Mar 13 (1 day ago)

to me

The Daily is out! Stories via @squashracketrev @fnallase1 - @Squashcomau

Ferez Nallaseth,

You were mentioned in a Tweet!

(D8) Y is more than sex switch. Peter Shimon's Post LinkedIn. 4.23.2014. pdf

(6k)

(D9) Reprieve For Men-Y Chromosome Is Not Vanishing . Scientific Amer. FSN.4.25.pdf

(22k)

(D10)ResponseToDr.DianaBei.NeurodegDG.5.15.2014.pdf

(D11)ResponseToDr.DianaBei.NeurodegDG.NYT.5.17.2014.

(D12) EvolMed-Resp.Dr.Diana Bei.NDG-2.5.22.2014.pdf

(D13) EvolMed-Resp.Dr.Diana Bei.NDG-3.5.23.2014.pdf

(D14) Comment by FSN: Excavations in China - redefining origins of Zoroastrians? 8.26.2014.pdf

(D15) Finding Risks, Not answers, in Gene Tests, By Denise Grady and Andrew Pollack, NYT, 9.22.2014

(D16) Darwin Quote Image.1876.pdf

(D17) Do we want this - gene editing on human embryos?5.16.2015.pdf

(D17) Do we want this - gene editing on human embryos? Do we have the right to deny recourse?5.16.2015c.pdf

(D18) Lost Y chromosome Genes Found on Autosomes. The Scientist. 5.27.2015 (We are glad to see that disinformation related to our work on the Y chromosome is being eroded by new science.).pdf

(D19) What is the Life Sciences Institute of New Jersey? Why and how does it exist?What are its goals? Ferez S. Nallaseth, MS, PhD. 6.9.2015.pdf

(D20) What is the Life Sciences Institute of New Jersey? Why and how does it exist? What are its goals? Ferez S. Nallaseth, MS, PhD, 6.14.2015.6.14.2015.pdf

(D21) Consolidated Citations- Ferez S. Nallaseth, PhD (PubMed, Google Scholar, Research Gate, LinkedIn, personal & SquashNexusWithNeurosciences websites) - FSN.10.22.2015.pdf

(D22)WhyFnxalIsTheIndispenMoietyOfFnxalGenomics!11.21.2015.pdf

(D23)WhyFnxalIsTheIndispenMoietyOfFnxalGenomics!11.24.2015.pdf

(D24) LinkedIn PulsePost-Asilomar Revisited! The debate on the non-issue that is CrispR/Cas9 & why it detracts from the basic obligations of Humankind!.12.4.2015

(D25a) LinkedIn Pulse Post -What is lost in confronting Global Health & Economic Crises? Scale! Science & Cost - Benefit Ratios Overwhelmingly Support Marshall Plan based Preemption!12.10.2015docx.pdf

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