Suzuki et al. (in prep.)
van Velzen et al. (in prep.)
Kuo et al. (in prep.)
Yamamichi M (under review)
Kitano et al. (in revision)
Uematsu et al. (under review)
Toju et al. (in revision)
Shibasaki S, Yamamichi M (in revision) The double-edged effect of environmental fluctuations on evolutionary rescue. bioRxiv DOI: 10.1101/2024.08.09.607399
Gómez-Llano M, Yamamichi M, Siepielski AM (accepted)
Kawaguchi YW, Yamamichi M (in press) A single episode of sexual reproduction can produce large variation in population growth rates under dual stressors. Journal of Evolutionary Biology 38 DOI: 10.1093/jeb/voaf041 (bioRxiv DOI: 10.1101/2024.04.26.589870)
Morita K, Yamamichi M (2024) Character displacement or priority effects: immigration timing can affect community assembly with rapid evolution. Proceedings of the Royal Society B: Biological Sciences 291(2035): 20242145 DOI: 10.1098/rspb.2024.2145 [Supplement] [PMC] [Institutional Repository] [GitHub]
Ito H, Yamamichi M (2024) A complete classification of evolutionary games with environmental feedback. PNAS Nexus 3(11): pgae455 DOI: 10.1093/pnasnexus/pgae455 [Supplement] [PMC] [Institutional Repository]
Letten AD, Yamamichi M, Richardson JA, Ke P-J (2024) Microbial dormancy supports multi-species coexistence under resource fluctuations. Ecology Letters 27(9): e14507 DOI: 10.1111/ele.14507 [Supplement] [Zenodo] [GitHub]
Arenas-Castro H, Berdejo-Espinola V, Chowdhury S, Rodríguez-Contreras A, James ARM, Raja NB, Dunne EM, Bertolino S, Emidio NB, Derez CM, Drobniak SM, Fulton GR, Henao-Diaz LF, Kaur A, Kim CJS, Lagisz M, Medina I, Mikula P, Narayan VP, O'Bryan CJ, Oh RRY, Ovsyanikova E, Pérez-Hämmerle K-V, Pottier P, Powers JS, Rodriguez-Acevedo AJ, Rozak AH, Sena PHA, Sockhill NJ, Tedesco AM, Tiapa-Blanco F, Tsai J-S, Villarreal-Rosas J, Wadgymar SM, Yamamichi M, Amano T (2024) Academic publishing requires linguistically inclusive policies. Proceedings of the Royal Society B: Biological Sciences 291(2018): 20232840 DOI: 10.1098/rspb.2023.2840 [Supplement] [Zenodo] [PMC] (EcoEvoRxiv DOI: 10.32942/X2NS3K) [Nature News] [Pesquisa Fapesp] [Scimex] [The Conversation]
Otake Y, Yamamichi M, Hirata Y, Odagiri H, Yoshida T (2024) Different photoperiodic responses in diapause induction can promote the maintenance of genetic diversity via the storage effect in Daphnia pulex. Proceedings of the Royal Society B: Biological Sciences 291(2016): 20231860 DOI: 10.1098/rspb.2023.1860 [Supplement] [PMC]
Fujita H, Ushio M, Suzuki K, Abe MS, Yamamichi M, Okazaki Y, Canarini A, Hayashi I, Fukushima K, Fukuda S, Kiers ET, Toju H (2023) Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics. Frontiers in Microbiology 14: 1261137 DOI: 10.3389/fmicb.2023.1261137 [Supplement] [PMC] (bioRxiv DOI: 10.1101/2023.01.17.524457)
Yamamichi M, Letten AD, Schreiber SJ (2023) Eco-evolutionary maintenance of diversity in fluctuating environments. Ecology Letters 26(S1): S152-S167 DOI: 10.1111/ele.14286 [Supplement] [Institutional Repository] (Special issue: Exploring the border between ecology and evolution)
Yamamichi M, Ellner SP, Hairston NG Jr (2023) Beyond simple adaptation: Incorporating other evolutionary processes and concepts into eco-evolutionary dynamics. Ecology Letters 26(S1): S16-S21 DOI: 10.1111/ele.14197 (Authorea DOI: 10.22541/au.166438574.48839383/v1) [Institutional Repository] (Special issue: Exploring the border between ecology and evolution)
Morita K, Yamamichi M (2023) How does the magnitude of genetic variation affect ecological and reproductive character displacement? Population Ecology 65(4): 220-230 DOI: 10.1002/1438-390X.12097 [Supplement] (bioRxiv DOI: 10.1101/2021.02.26.432976) [Institutional Repository] (Special feature: Sex and biological communities, Young Author Award)
Yamamichi M, Tsuji K, Sakai S, Svensson EI (2023) Frequency-dependent community dynamics driven by sexual interactions. Population Ecology 65(4): 204-219 DOI: 10.1002/1438-390X.12165 [Institutional Repository] (Special feature: Sex and biological communities, Editor's choice, Top Cited Article, Top Viewed Article)
Nakazawa T, Katayama N, Utsumi S, Yamawo A, Yamamichi M (2023) When to help juveniles, adults, or both: analyzing the evolutionary models of stage-structured mutualism. Frontiers in Ecology and Evolution 11: 1138138 DOI: 10.3389/fevo.2023.1138138 [Supplement]
Fujita H, Ushio M, Suzuki K, Abe MS, Yamamichi M, Okazaki Y, Canarini A, Hayashi I, Fukushima K, Fukuda S, Kiers ET, Toju H (2023) Facilitative interaction networks in experimental microbial community dynamics. Frontiers in Microbiology 14: 1153952 DOI: 10.3389/fmicb.2023.1153952 [Supplement] [PMC] (bioRxiv DOI: 10.1101/2023.01.19.524804)
Fujita H, Ushio M, Suzuki K, Abe MS, Yamamichi M, Iwayama K, Canarini A, Hayashi I, Fukushima K, Fukuda S, Kiers ET, Toju H (2023) Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics. Mircobiome 11: 63 DOI: 10.1186/s40168-023-01474-5 [Supplement] [PMC] (bioRxiv DOI: 10.1101/2022.08.23.505041) [Institutional Repository]
Yamamichi M, Letten AD (2022) Extending the gleaner–opportunist trade-off. Journal of Animal Ecology 91(11): 2163-2170 DOI: 10.1111/1365-2656.13813 [Supplement] [PMC] [Institutional Repository]
Hirama F, Urabe J, Doi H, Kazama T, Noguchi T, Tappenbeck TH, Katano I, Yamamichi M, Yoshida T, Elser JJ (2022) Terrigenous subsidies in lakes support zooplankton production mainly via a green food chain and not the brown food chain. Frontiers in Ecology and Evolution 10: 956819 DOI: 10.3389/fevo.2022.956819 [Supplement]
Yamamichi M, Gibbs T, Levine JM (2022) Integrating eco-evolutionary dynamics and modern coexistence theory. Ecology Letters 25(10): 2091-2106 DOI: 10.1111/ele.14078 [Supplement] [PMC] [Institutional Repository]
Yamamichi M (2022) How does genetic architecture affect eco-evolutionary dynamics? A theoretical perspective. Philosophical Transactions of the Royal Society B: Biological Sciences 377(1855): 20200504 DOI: 10.1098/rstb.2020.0504 [PMC] [Institutional Repository] (Theme issue: Genetic basis of adaptation and speciation: from loci to causative mutations)
Kasada M, Yamamichi M (2022) Idea paper: Controlling trait adaptation to decrease population densities for conservation and management. Ecological Research 37(4): 475-480 DOI: 10.1111/1440-1703.12300 (Special feature: Promoting idea sharing via Idea Paper 2)
Yamamichi M, Letten AD (2021) Rapid evolution promotes fluctuation-dependent species coexistence. Ecology Letters 24(4): 812-818 DOI: 10.1111/ele.13707 [Supplement] (bioRxiv DOI: 10.1101/2020.08.05.239053) [Institutional Repository] [Faculty Opinions]
Letten AD, Yamamichi M (2021) Gleaning, fast and slow: In defense of a canonical ecological trade-off. Proceedings of the National Academy of Sciences of the United States of America 118(5): e2022754118 DOI: 10.1073/pnas.2022754118 [PMC]
Kazama T, Urabe J, Yamamichi M, Tokita K, Yin X, Katano I, Doi H, Yoshida T, Hairston NG Jr (2021) A unified framework for herbivore-to-producer biomass ratio reveals the relative influence of four ecological factors. Communications Biology 4: 49 DOI: 10.1038/s42003-020-01587-9 [Supplement] [Dryad] [PMC] (Authorea DOI: 10.22541/au.159121368.85843146)
Yamamichi M, Kyogoku D, Iritani R, Kobayashi K, Takahashi Y, Tsurui-Sato K, Yamawo A, Dobata S, Tsuji K, Kondoh M (2020) Intraspecific adaptation load: a mechanism for species coexistence. Trends in Ecology & Evolution 35(10): 897-907 DOI: 10.1016/j.tree.2020.05.011 [Supplement] (Cover Article)
Yamamichi M, Koizumi I (2020) Toxic males: Density-dependent male mating harassment can explain geographic parthenogenesis. Ecological Research 35(2): 281-288 DOI: 10.1111/1440-1703.12097 [Supplement] (Award/Cover Article)
Yamamichi M, Lyberger K, Patel S (2019) Antagonistic coevolution between multiple quantitative traits: Matching dynamics can arise from difference interactions. Population Ecology 61(4): 362-370 DOI: 10.1002/1438-390X.12022 [Supplement] (bioRxiv DOI: 10.1101/509885) (Award/Cover Article, Top Downloaded Paper 2018-2019/2019-2020)
Cortez MH, Yamamichi M (2019) How (co)evolution alters predator responses to increased mortality: extinction thresholds and hydra effects. Ecology 100(10): e02789 DOI: 10.1002/ecy.2789 [Supplement]
Schreiber SJ, Yamamichi M, Strauss SY (2019) When rarity has costs: coexistence under positive frequency-dependence and environmental stochasticity. Ecology 100(7): e02664 DOI: 10.1002/ecy.2664 [Supplement] [GitHub] (bioRxiv DOI: 10.1101/161919)
Yamamichi M, Hairston NG Jr, Rees M, Ellner SP (2019) Rapid evolution with generation overlap: the double-edged effect of dormancy. Theoretical Ecology 12(2): 179-195 DOI: 10.1007/s12080-019-0414-7 [Supplement] [Free full-text view] (Special issue to honor Alan Hastings’ 65th birthday)
Yamamichi M, Klauschies T, Miner BE, van Velzen E (2019) Modelling inducible defences in predator–prey interactions: assumptions and dynamical consequences of three distinct approaches. Ecology Letters 22(2): 390-404 DOI: 10.1111/ele.13183 [Supplement]
Yamamichi M, Kazama T, Tokita K, Katano I, Doi H, Yoshida T, Hairston NG Jr, Urabe J (2018) A shady phytoplankton paradox: when phytoplankton increases under low light. Proceedings of the Royal Society B: Biological Sciences 285(1882): 20181067 DOI: 10.1098/rspb.2018.1067 [Supplement] [Dryad] [PMC]
Toju H, Peay KG, Yamamichi M, Narisawa K, Hiruma K, Naito K, Fukuda S, Ushio M, Nakaoka S, Onoda Y, Yoshida K, Schlaeppi K, Bai Y, Sugiura R, Ichihashi Y, Minamisawa K, Kiers ET (2018) Core microbiomes for sustainable agroecosystems. Nature Plants 4(5): 247-257 DOI: 10.1038/s41477-018-0139-4 [Free full-text view]
Toju H, Yamamichi M, Guimarães PR Jr, Olesen JM, Mougi A, Yoshida T, Thompson JN (2017) Species-rich networks and eco-evolutionary synthesis at the metacommunity level. Nature Ecology & Evolution 1(2): 0024 DOI: 10.1038/s41559-016-0024 [Supplement] [Free full-text view]
Yamamichi M, Hoso M (2017) Roles of maternal effects in maintaining genetic variation: Maternal storage effect. Evolution 71(2): 449-457 DOI: 10.1111/evo.13118 [Supplement]
Adachi T, Costa DP, Robinson PW, Peterson SH, Yamamichi M, Naito Y, Takahashi A (2017) Searching for prey in a three-dimensional environment: hierarchical movements enhance foraging success in northern elephant seals. Functional Ecology 31(2): 361-369 DOI: 10.1111/1365-2435.12686 [Supplement] [FE Spotlight]
Yamamichi M, Ellner SP (2016) Antagonistic coevolution between quantitative and Mendelian traits. Proceedings of the Royal Society B: Biological Sciences 283(1827): 20152926 DOI: 10.1098/rspb.2015.2926 [Supplement] [Dryad] [PMC]
Yen JDL, Cabral RB, Cantor M, Hatton I, Kortsch S, Patrício J, Yamamichi M (2016) Linking structure and function in food webs: maximization of different ecological functions generates distinct food web structures. Journal of Animal Ecology 85(2): 537-547 DOI: 10.1111/1365-2656.12484 [Supplement]
Sato NJ, Tanaka KD, Okahisa Y, Yamamichi M, Kuehn R, Gula R, Ueda K, Theuerkauf J (2015) Nestling polymorphism in a cuckoo-host system. Current Biology 25(24): R1164-R1165 DOI: 10.1016/j.cub.2015.11.028 [Supplement]
Yamamichi M, Miner BE (2015) Indirect evolutionary rescue: prey adapts, predator avoids extinction. Evolutionary Applications 8(8): 787-795 DOI: 10.1111/eva.12295 [Supplement] [PMC] [Institutional Repository]
Yamamichi M, Meunier CL, Peace A, Prater C, Rúa MA (2015) Rapid evolution of a consumer stoichiometric trait destabilizes consumer–producer dynamics. Oikos 124(7): 960-969 DOI: 10.1111/oik.02388 [Supplement] [Oikos blog] (Woodstoich III Article)
Kasada M, Yamamichi M, Yoshida T (2014) Form of an evolutionary tradeoff affects eco-evolutionary dynamics in a predator–prey system. Proceedings of the National Academy of Sciences of the United States of America 111(45): 16035-16040 DOI: 10.1073/pnas.1406357111 [Supplement] [PMC] [Institutional Repository] (Cover Article)
Tezuka A, Kasagi S, van Oosterhout C, McMullan M, Iwasaki WM, Kasai D, Yamamichi M, Innan H, Kawamura S, Kawata M (2014) Divergent selection for opsin gene variation in guppy (Poecilia reticulata) populations of Trinidad and Tobago. Heredity 113(5): 381-389 DOI: 10.1038/hdy.2014.35 [Supplement]
Yamamichi M, Yoshida T, Sasaki A (2014) Timing and propagule size of invasion determine its success by a time-varying threshold of demographic regime shift. Ecology 95(8): 2303-2315 DOI: 10.1890/13-1527.1 [Supplement] [Institutional Repository]
Yamamichi M, Sasaki A (2013) Single-gene speciation with pleiotropy: Effects of allele dominance, population size, and delayed inheritance. Evolution 67(7): 2011-2023 DOI: 10.1111/evo.12068 [Supplement]
Yamamichi M, Innan H (2012) Estimating the migration rate from genetic variation data. Heredity 108(4): 362-363 DOI: 10.1038/hdy.2011.83
Yamamichi M, Gojobori J, Innan H (2012) An autosomal analysis gives no genetic evidence for complex speciation of humans and chimpanzees. Molecular Biology and Evolution 29(1): 145-156 DOI: 10.1093/molbev/msr172 [Supplement] [PMC]
Yamamichi M, Yoshida T, Sasaki A (2011) Comparing the effects of rapid evolution and phenotypic plasticity on predator-prey dynamics. The American Naturalist 178(3): 287-304 DOI: 10.1086/661241 [Supplement]
Matthews B, Narwani A, Hausch S, Nonaka E, Peter H, Yamamichi M, Sullam KE, Bird KC, Thomas MK, Hanley TC, Turner CB (2011) Toward an integration of evolutionary biology and ecosystem science. Ecology Letters 14(7): 690-701 DOI: 10.1111/j.1461-0248.2011.01627.x [Eco-Evo Evo-Eco blog]