Publications

The publications from the studies pursued in our (extened) laboratory in the Department of Genetics, University of Calcutta are appended below.  For a complete list of my publications, please refer to my CV.

• Dutta Tithi, Ganguly Kausik, Saha Arpan, Sil Asim, Ray Kunal, Sengupta Mainak. Identifying genetic defects in oculocutaneous albinism patients of West Bengal, Eastern India. Molecular Biology Reports. (Accepted). 2024.

• Saha Arpan, Das Shrishti, De Samragni, Dutta Tithi, Roy Shubhrajit, Biswas Atanu, Sengupta Mainak. An effort to identify genetic determinants in Wilson Disease siblings manifesting striking clinical heterogeneity: An exome profiling study of two Indian families. Pediatric Neurology. (Accepted). 2024.

• Banerjee Souradeep, Dutta Bratati, Biswas Soumili, Sengupta Mainak. The Frigging kinship between prostate carcinogenesis and the genomic landscape of Indian males. International Journal of Bioinformatics and Intelligent Computing (Accepted). 2024.

• Dhauria Mrinmay, Pyne Tushar, Nandagopal Krishnadas, Sen Roy Sugata, Sengupta Mainak*, Das Madhusudan*. Elucidating the Association of Key Socio-demographic Factors Underlying Happiness and Well-being in the Eastern Indian Bengali Population: Role of key factors in subjective happiness. International Journal of Bioinformatics and Intelligent Computing (Accepted). 2024. (*Joint corresponding authors)

• Dutta Tithi, Sengupta Sambuddha, Adhya Suchismita, Saha Arpan, Sengupta Debmalya, Mondal Ritisri, Bhattacharjee Samsiddhi*, Sengupta Mainak*. Identification of TNF-α as major susceptible risk locus for vitiligo: A systematic review and meta-analysis study in Asian population. Dermatology (Accepted). 2024. (*Joint corresponding authors)

• Sengupta Sutanuka*, Sengupta Debmalya*, Banerjee Souradeep, Dutta Bratati, Sengupta Mainak. Meta-analysis of polymorphic variants conferring acute lymphoblastic leukemia risk in the Indian population. The Nucleus. (Accepted). Jan 2024. (*Equal contribution)

• Ganguly Kausik, Dutta Tithi, Ganguli Sayak, Sengupta Mainak. Common structural attributes of Tyrosinase variants are unlikely to determine differential retentions within Endoplasmic Reticulum: A modelling study with 45 variants. Proceedings of the Indian National Science Academy. Accepted. Aug 2023.

• Bose Arkopala, Maitra Sumit, Sengupta Mainak, Chatterjee Diptendu, Bandyopadhyay Arup Ratan. Human Cutaneous Microbiome and Skin Carcinogenesis: An Immunological Conundrum. Archives of Dermatology and Skin Care. Jun 5, 1. 2023.

• Sengupta Debmalya, Mukhopadhyay Pramiti, Banerjee Souradeep, Ganguly Kausik, Mascharak Prateek, Mukherjee Noyonika, Mitra Sangeeta, Bhattacharjee Samsiddhi, Mitra Ritabrata, Sarkar Abhijit, Chaudhuri Tamohan, Bhattacharjee Gautam, Nath Somsubhra, Roychoudhury Susanta & Sengupta Mainak. Identifying polymorphic cis-regulatory variants as risk markers for lung carcinogenesis and chemotherapy responses in tobacco smokers from Eastern India. Scientific Reports. 13, 4019. https://doi.org/10.1038/s41598-023-30962-9. 2023. 

• Roy Shubhrajit, Ghosh Sampurna, Ray Jharna, Ray Kunal* and Sengupta Mainak*. Missing heritability of Wilson disease: a search for the uncharacterized mutations. Mammalian Genome. Mar;34(1):1-11. 2023.

• Sadhukhan Susanta, Paul Nirvika, Ghosh Sudakshina, Munian Dinesh, Ganguly Kausik, Ghosh Krishnendu, Sengupta Mainak, Das Madhusudan. Analysis of DNMT1 Gene Variants in Progression of Neural Tube Defects- an in silico to invitro approach. Bioscience Reports. Dec 22;42(12): 2022.

• Dutta Tithi, Mitra Sayantan, Saha Arpan, Ganguly Kausik, Pyne Tushar, Sengupta Mainak. A comprehensive meta-analysis and prioritization study to identify vitiligo associated coding and non-coding SNV candidates using web-based Bioinformatics tools. Scientific Reports. Aug 25;12(1):14543. 2022.

• Ganguly K, Sengupta, D, Sarkar, N, Mukherjee N, Dutta T, Saha A, Saha,T, Ghosh B, Chatterjee S, Brahmachari P, Kundu A, Sengupta M. Comprehensive in silico analyses of single nucleotide variants of the human orthologues of 171 murine loci to seek novel insights into the genetics of human pigmentation. Proceedings of Zoological Society. 75, 361–380. 2022.

• Bose Rahul, Sengupta Mainak, Basu Debabrata, Jha Sumita. rolB-transgenic Nicotiana tabacum T1 plants exhibit upregulated ARF7 and ARF19 gene expression. Plant Direct. Jun 18;6(6):e414. 2022.

• Saha Tania, Bhowmick Bismoy, Sengupta Debmalya, Banerjee Souradeep, Mitra Ritabrata, Sarkar Abhijit, Chaudhuri Tamohan, Bhattacharjee Gautam, Nath Somsubhra, Roychoudhury Susanta, Sengupta Mainak. No association of the common Asian mitochondrial DNA haplogroups with lung cancer in East Indian population. Journal of Basic and Clinical Physiology and Pharmacology. (doi: 10.1515/jbcpp- 2021-0352. Online ahead of print). 2022.

• Pyne Tushar, Ghosh Poulomi, Dhauria Mrinmay, Ganguly Kausik, Sengupta Debmalya, Nandagopal Krishnadas, Sengupta Mainak*, Das Madhusudan*. Prioritization of Human Well-being Spectrum related GWAS-SNVs using ENCODE-based web-tools predict interplay between PSMC3, ITIH4, and SERPINC1 genes in modulating well-being. Journal of Psychiatric Research. Nov 29;145:92-101. 2021. *Joint corresponding authors.

• Sengupta Debmalya#, Banerjee Souradeep#, Mitra Ritabrata, Sarkar Abhijit, Chaudhuri Tamohan, Bhattacharjee Gautam, Nath Somsubhra, Roychoudhury Susanta, Bhattacharjee Samsiddhi* and Sengupta Mainak*. A comprehensive meta- analysis and a case-control study give insights into genetic susceptibility of lung cancer and subgroups. Scientific Reports. Jul; 16;11(1):14572. 2021 #Equal Contributors, *Joint corresponding authors.

• Saha Tania, Roy Somrita, Chakraborty Rajashree, Biswas Arindam, Das Shyamal K, Ray Kunal, Ray Jharna and Sengupta Mainak. Mitochondrial DNA Haplogroups And Three Independent Polymorphisms Have No Association With The Risk Of Parkinson's Disease In East Indian Population. Neurology India. Mar-Apr;69(2):461- 465. 2021.

• Sengupta Debmalya, Bhattacharya Gairika, Ganguli Sayak*, Sengupta Mainak*. Structural insights and evaluation of the potential impact of missense variants on the interactions of SLIT2 with ROBO1/4 in cancer progression. Scientific Reports Dec;10, 21909. 2020. *Joint Corresponding authors.

• Pyne Tushar, Dhauria Mrinmay, Chaudhury Debadeep, Valecha Drishti, Ghosh Saurabh, Nandagopal Krishnadas, Sengupta Mainak, Das Madhusudan. Bengali Translations, Reliability Assessment and Validations of Four Happiness scales in a representative population from Kolkata, India. International Journal of Indian Psychology, Dec;8(4), 1439-1461, 2020.

• Sengupta Debmalya, Banerjee Souradeep, Mukhopadhyay Pramiti, Guha, Ganguly Kausik, Bhattacharjee Samsiddhi, Sengupta Mainak. A meta-analysis and in silico analysis of polymorphic variants conferring breast cancer risk in the Indian subcontinent. Future Oncology. Sep;16(27):2121-2142, 2020.

• Ganguly K, Dutta T, Saha A, Sarkar D, Sil A, Ray K, Sengupta M. Mapping the TYR gene reveals novel and previously reported variants in Eastern Indian patients highlighting preponderance of the same changes in multiple unrelated ethnicities. Annals of Human Genetics. May;84(3):303-312. 2020.

• Roy S, Ghosh S, Bhattacharya S, Saha A, Das S, Gangopadhyay P, Bavdekar A, Ray K, Sengupta M*, Ray J*. Dopamine β hydroxylase (DBH) polymorphisms do not contribute towards the clinical course of Wilson’s disease in Indian patients. Journal of Gene Medicine Sep;21(9). 2019 *Joint Corresponding authors.

• Sengupta M, Dutta T., Ray K. SLC45A2 (Solute Carrier Family 45 Member 2);  Atlas of Genetics and Cytogenetics in Oncology and Haematology 2019. On line version: http://AtlasGeneticsOncology.org/Genes/SLC45A2ID41306ch5p13.htm.

• Ganguly K, Saha T, Saha A, Dutta T, Banerjee S, Sengupta D, Bhattacharya S, Ghosh S, Sengupta M. Meta-Analysis and Prioritization of human skin pigmentation associated GWAS-SNPs using ENCODE data based web-tools. Archives of Dermatological Research Apr;311(3):163-171, 2019.

•  Roy S, Pal P, Ghosh S, Bhattacharya S, Das SK, Gangopadhyay PK, Bavdekar A, Ray K, Sengupta M*, Ray J*. Potential role of Brain Derived Neurotrophic Factor and  Dopamine receptor D2 variants modify the susceptibility and clinical course of Wilson's     disease. NeuroMolecular Medicine. Sep;20(3):401-408. 2018.*Joint Corresponding authors    

• Sengupta D, Guha U, Mitra S, Ghosh S, Bhattacharjee S*, Sengupta M*. Meta- analysis of polymorphic variants conferring genetic risk to Cervical Cancer in Indian women supports CYP1A1 as an important associated locus. Asian Pacific Journal of Cancer Prevention. 24;19(8):2071-2081. 2018. *Joint Corresponding authors

• Sultana Z, Bankura B, Pattanayak AK, Sengupta D, Sengupta M, Saha ML, Panda CK & Das M. Association of Interleukin-1 beta and Tumor necrosis factor-alpha genetic polymorphisms with gastric cancer in India, Environmental and Molecular Mutagenesis 59(7):653-667, 2018.

• Roy S., Ganguly K., Pal P., Ghosh S., Das S.K., Gangopadhyay P.K., Bavdekar A., Ray K., Sengupta M. and Ray J. Influence of Apolipoprotein E polymorphism on susceptibility of Wilson disease. Annals of Human Genetics, 82(2), 53-59, 2017. *Joint Corresponding authors

• Sengupta D, Guha U, Bhattacharjee S*, Sengupta M*. Association of 12 polymorphic variants conferring genetic risk to lung cancer in Indian population: An extensive meta-analysis, Environmental and Molecular Mutagenesis, 58(9):688-700, 2017.

*Joint Corresponding authors

• Ganguly K, Dutta T, Samanta S, Sil A, Ray K, and Sengupta M. C10ORF11 is Unlikely to have a Major Contribution towards OCA Pathogenesis in Southern and Eastern India, Journal of Human Biology & Health Education, 1: 003, 2017.

• Saha PS, Sengupta M, and Jha S. Ribosomal DNA ITS1, 5.8S and ITS2 secondary structure, nuclear DNA content and phytochemical analyses reveal distinctive characteristics of four subclades of Protasparagus, Journal of Systematics and Evolution, 55: 54–70, 2017.

• Ray K, Sengupta M, Ghosh S. SLC24A5 (solute carrier family 24 (sodium/potassium/calcium exchanger), member 5); Atlas of Genetics and Cytogenetics in Oncology and Haematology, 21(2), 2017.

• Ray K, Sengupta M, Ghosh S. C10orf11 (Chromosome 10 Open Reading Frame 11). Atlas of Genetics and Cytogenetics in Oncology and Haematology, 21(1), 2017.

• Ray K, Sengupta M, Ghosh S. TYRP1 (tyrosinase-related protein 1); Atlas of Genetics and Cytogenetics in Oncology and Haematology, 21(1), 2017.

• Mondal M*, Sengupta M* and Ray K. Functional assessment of tyrosinase variants identified in individuals with albinism is essential for unequivocal determination of genotype to phenotype correlation, British Journal of Dermatology, 175(6):1232-1242, 2016. * The first two authors contributed equally.

• Ray, K; Sengupta, M; Ghosh, S. OCA2 (oculocutaneous albinism II), Atlas of Genetics and Cytogenetics in Oncology and Haematology. 2016. 20(12), 2016.

• Sengupta M,*# Sarkar D,* Ganguly K, Sengupta D, Bhaskar S, Ray K.# In silico analyses of missense mutations in coagulation factor VIII: Identification of severity- determinants of haemophilia A, Haemophilia, 21(5):662-9. 2015. (#Equal Contributors, *Joint corresponding authors).

• Saha PS, Ray S, Sengupta M and Jha S. Molecular phylogenetic studies based on rDNA ITS, cpDNA trnL intron sequence and cladode characteristics in nine Protasparagus taxa, Protoplasma, 252(4):1121-34, 2015. Mookherjee S, Bhattacharjee A, Sengupta M. The aging eye. Journal of Ophthalmology, 2015: 832326, 2015.

• Sarkar D, Ray K, Sengupta M. Structure-Function Correlation Analysis of Connexin50 Missense Mutations Causing Congenital Cataract: Electrostatic Potential Alteration Could Determine Intracellular Trafficking Fate of Mutants. Biomed Research International, 2014:673895, 2014.

• Mukherjee S, Dutta S, Majumdar S, Biswas T, Jaiswal P, Sengupta M, Bhattacharya A, Gangopadhyay PK, Bavdekar A, Das SK, Ray K. Genetic defects in Indian Wilson disease patients and genotype-phenotype correlation. Parkinsonism and Related Disorders, 20(1):75-81, 2014.

• Sengupta M, Sarkar D, Mondal M, Samanta S, Sil A, Ray K. Analysis of MC1R variants in Indian Oculocutaneous Albinism patients: Highlighting the risk of skin cancer among the albinos. Journal of Genetics, 92(2):305-8, 2013.

• Ray K, Sengupta M. Oculocutaneous Albinism. Atlas of Genetics and Cytogenetics in Oncology and Haematology, 17(1), 2013. Updated by Ray K, Sengupta M and Ganguly, K in 20(6), 2016.