Publications

List of publications in reverse chronological ordertions"

Submitted

• A.M.H. Chan, M.L. Pay, J. Christensen, F. He, L.C. Roden, H. Ahmed, M. Foo, "Red, Blue or Mix: Choice of Optimal Light Qualities for Enhanced Plant Growth through in silico Analysis" submitted.

• M.L. Pay, J. Christensen, F. He, L.C. Roden, H. Ahmed, M. Foo, "PLL-based enhanced control of Boost PFC converter for smart farming lighting application" submitted.

• H. Mistry, D.S. Laila, M. Foo, "Teaching embedded control system design of electromechanical devices using a lab-scale smart farming system", submitted.

• M.L. Pay, J. Christensen, F. He, L.C. Roden, H. Ahmed, M. Foo, "A comparative study of FLLL and PLL in Boost PFC converter control for smart greenhouse farming application" submitted.

• I. Enebuse, B. Ibrahim, M. Foo, R.S. Matharu, H. Ahmed, "A self-recoverable hand-eye calibration for vision guided robots using a guided particle hybrid filter and genetic algorithm-based resampling" submitted.

Published

1. N.M.G. Paulino, M. Foo, T.F.A. de Greef, J. Kim, D.G. Bates (2023), "A theoretical framework for implementable nucleic acids feedback systems" Bioengineering, 10, 466

2. I. Enebuse, B. Ibrahim, M. Foo, R.S. Matharu, H. Ahmed (2023) "An accuracy assessment of hand-eye calibration techniques in uncertain environment for vision guided robots", to appear in Proceedings of International Conference on Mechatronics, 15-17 Mar, Loughborough, UK.

3. A.H. Tan, D.S. Ong, M. Foo (2022), "Estimation of battery internal resistance using built-in self-scaling method", Journal of Energy Storage, 59, 106481.

4. C. McGirk, H. Ahmed, M. Foo, A. Pike, Q. Lu, D.S. Laila (2022), "A comparative analysis of moving average filter and Kalman filter for large diesel engine test cell back-pressure control", to appear in International Journal of Engine Research.

5. M.L. Pay, J. Christensen, F. He, L. Roden, M. Rasel, L. Tyler, H. Ahmed, M. Foo (2022), "A review of LED driver topologies and control methods for energy efficient smart farming application", to appear in Proceedings of International Conference on Renewable Energy and Conservation, 18-20 Nov, Paris, France.

6. M.L Pay, J. Christensen, F. He, L. Roden, H. Ahmed, M. Foo (2022), "An extended plant circadian clock model for characterising flowering time under different light quality conditions", Proceedings of International Conference on Control, Automation and Systems, 27 Nov - 1 Dec, Busan, South Korea, pp. 1848-1853.

7. I. Enebuse, B. Ibrahim, M. Foo, R.S Matharu, H. Ahmed (2022), "Accuracy evaluation of hand-eye calibration techniques for vision-guided robots", PLoS One, Vol. 17, e0273261.

8. J. Ryan, S. Hong, M. Foo, J. Kim, X. Tang (2022), " Model-based investigation of the relationship between regulation level and pulse property of I1-FFL gene circuits", ACS Synthetic Biology, 11, 2417-2428.

9. M. Foo, L. Dony, F. He (2022), "Data-driven dynamical modelling of a pathogen-infected plant gene regulatory network: a comparative analysis" BioSystems, 219, 104732.

10. I. Kioutsoukis, M. Foo, A.H. Tan (2022), "Application of multi-input uncorrelated periodic signals for identification of active suspension system" Proceedings of Advances in Control and Optimization of Dynamical Systems, 22-25 Feb, Assam, India, pp. 229-234.

11. M.L. Pay, D.W. Kim, D.E. Somers, J.K. Kim, M. Foo (2022), "Modeling of plant circadian clock for characterizing hypocotyl growth under different light quality conditions" in Silico Plants, 4, 1-15.

12. M. Foo, O.E. Akman, D.G. Bates (2022), "Restoring circadian gene profiles in clock networks using synthetic feedback control" NPJ Systems Biology and Applications, Vol. 8, 7.

13. J. Pereira, A.M. Mouazen, M. Foo, H. Ahmed (2021), "A framework of artificial light management for optimal plant development for smart greenhouse application" PLoS One, Vol. 16, e0261281.

14. A.H. Tan, M. Foo, D.S. Ong (2021), "Road classification using built-in self-scaling method of Bayesian regression", Journal of Sound and Vibration, 516, 116523.

15. N. Horri, O. Haas, S. Wang, M. Foo, M.S Fernandez (2021), "Mode switching control using lane keeping assist and waypoints tracking for autonomous driving in a city environment", Transportation Research Record, 2676, 712-727.

16. I. Enebuse, M. Foo, B. Ibrahim, H. Ahmed, F. Supmak, O.S. Eyobu (2021), "A comparative review of hand-eye calibration techniques for vision guided robots", IEEE Access, 9, pp 113143-113155.

17. S. Hong, D. Jung, J. Ryan, M. Foo, X. Tang, J. Kim (2021), "Design and evaluation of synthetic RNA-based incoherent feed-forward loop circuits" Biomolecules, 11, No. 8, 1182.

18. N.M.G. Paulino, M. Foo, T.F.A de Greef, J. Kim, D.G. Bates (2020), "Minimally complex nucleic acid feedback control systems for first experimental implementations" Proceedings of IFAC World Congress, 11-17 July, Berlin, Germany, pp. 16745-16752.

19. N.M.G. Paulino, M. Foo, J. Kim, D.G. Bates (2020), "On the stability nucleic acid feedback control system" Automatica, 16, 109103.

20. M. Foo, D.G. Bates, O.E. Akman (2020), "A simplified modelling framework facilitates more complex representations of plant circadian clocks" PLoS Computational Biology, 16, No. 3, e1007671.

21. N.M.G. Paulino, M. Foo, J. Kim, D.G. Bates (2019), "PID and state feedback controllers using DNA strand displacement reactions" IEEE Control Systems Letters, 7, pp. 805-810. (presented at IEEE CDC, Nice, France)

22. N.M.G. Paulino, M.Foo, J.Kim, D.G. Bates (2019), "Robustness analysis of a nucleic acid controller for a dynamic biomolecular process using structured singular value" Journal of Process Control, 78, pp. 34-44.

23. N.M.G. Paulino, M. Foo, J. Kim, D.G. Bates (2018), "Uncertainty modelling and stability robustness analysis of nucleic acid-based feedback control systems", Proceedings of IEEE  International Conference on Decision and Control, 17-19 Dec, Miami Beach, USA, pp. 1077-1082.

24. H.-H. Jo, Y.J. Kim, J.K. Kim, M. Foo, D.E. Somers, P.-J. Kim (2018), "Waveforms of molecular oscillations reveal circadian timekeeping mechanisms", Communications Biology, 1, 207.

25. M. Foo, I. Gherman, P. Zhang, D.G. Bates, K.J. Denby (2018), "A framework for engineering stress resilient plants using genetic feedback control and regulatory network rewiring" ACS Synthetic Biology, vol.7, issue 6, pp. 1553-1564.

26. M. Foo, J. Kim, D.G. Bates (2018), "Modelling and control of gene regulatory networks for perturbation mitigation", IEEE/ACS Transactions on Computational Biology and Bioinformatics, vol. 16, issue 2, pp. 583-595.

27. J. Kim, M. Foo, D.G. Bates (2018), "Computationally efficient modelling of stochastic spatio-temporal dynamics in biomolecular networks", Scientific Reports, Vol. 8, No. 3498.

28. M. Foo, I. Gherman, K.J. Denby and D.G. Bates (2017), "Control strategies for mitigating the effect for external perturbations on gene regulatory networks” Proceedings of IFAC World Congress, 9-14 July, Toulouse, France, pp. 12647-12652.

29. M. Foo, J. Kim and D.G. Bates (2017), "System identification of gene regulatory networks for perturbation mitigation via feedback control", Proceedings of IEEE International Conference on Networking, Sensing and Control, 16-18 May 2017, Calabria, Italy, pp. 216-221.

30. M. Foo, J. Kim, R. Sawlekar, D.G. Bates (2017), "Design of an embedded inverse-feedforward biomolecular tracking controller for enzymatic reaction processes", Computers and Chemical Engineering, Vol. 99, pp. 145-157.

31. R. Sawlekar, M. Foo and D.G. Bates (2016), "Robustness analysis of DNA-based biomolecular feedback controllers to parametric and time delay uncertainties", Proceedings of IEEE BioMedical Circuits and Systems Conference, 17-19 Oct 2016, Shanghai, China, pp. 548-551.

32. M. Foo, R. Sawlekar, V. Kulkarni and D.G. Bates (2016), "Biologically inspired design of feedback control systems implemented using DNA strand displacement reactions", Proceedings of IEEE Engineering in Medicine and Biology Society, 16-20 Aug, Orlando, USA, pp. 1455-1458.

33. M. Foo, R. Sawlekar, J. Kim, D.G. Bates, G-B. Stan and V. Kulkarni (2016), "Biomolecular implementation of nonlinear system theoretic operators" (invited paper), Proceedings of European Control Conference, 29 Jun-1 Jul, Aalborg, Denmark, pp. 1824-1831.

34. M. Foo, J. Kim, J. Kim, D.G. Bates (2016), "Proportional-Integral Degradation control allows accurate tracking of biomolecular concentrations with fewer chemical reactions", IEEE Life Sciences Letters, Vol. 2, No. 4, pp. 55-58.

35. M. Foo, R. Sawlekar, D.G. Bates (2016), "Exploiting the dynamic properties of covalent modification cycle for the design of synthetic analog biomolecular circuitry", Journal of Biological Engineering, Vol. 10, No. 15.

36. H.Y. Yoo, M. Iordachescu, J. Huang, E. Hennebert, S. Kim, S. Rho, M. Foo, P. Flammang, H. Zeng, D. Hwang, J.H. Waite and D.S. Hwang (2016), "Sugary interfaces mitigate contact damage where stiff meets soft", Nature Communications, Vol. 7, No. 11923.

37. H.Y. Yoo, J. Huang, L. Li, M. Foo, H. Zeng and D.S. Hwang (2016), "Nanomechanical contribution of collagen and von Willebrand factor A in marine underwater adhesion and its implication for collagen manipulation",  Biomacromolecules, Vol. 17, No. 3, pp. 946-953.

38. H.Y. Yoo, Y.H. Song, M. Foo, E. Seo, D.S. Hwang and J.H. Seo (2016), "Recombinant mussel proximal thread matrix protein promotes osteoblast cell adhesion and proliferation", BMC Biotechnology, Vol. 16, No. 16.

39. M. Foo, D.E. Somers and P.-J. Kim (2016), "Kernel architecture of the genetic circuitry of the Arabidopsis circadian system", PLoS Computational Biology, Vol. 12, No. 2, e1004748.

40. S. Kim, J. Sung, M. Foo, Y.-S. Jin and P.-J. Kim (2015), "Uncovering the nutritional landscape of food", PLoS One, Vol. 10, No. 3, e0118697.

41. M. Foo, D.E. Somers and P.-J. Kim (2015), "System identification of Arabidopsis plant circadian system", Journal of Korean Physical Society, Vol. 66, No. 4, pp.700-712.

42. M. Foo and P.-J. Kim (2014), "Modeling and control design of plant circadian system for flowering time in Arabidopsis", Proceedings of IEEE International Conference on Control Applications, 8-10 Oct, Antibes, France, pp. 1687-1692.

43. M. Foo, S.K. Ooi and E. Weyer, (2014), “System identification and control of Broken River”, IEEE Transactions on Control System Technology, Vol. 22, No. 2, pp. 618-634.

44. M. Foo and E. Weyer, (2013), “Nonlinearity test of the Saint Venant equations”, Proceedings of IEEE  International Conference on Decision and Control, 10-13 Dec, Florence, Italy, pp. 4925-4930.

45. M. Foo, H.Y. Yoo and P.-J. Kim, (2013), “System identification of circadian clock in plant Arabidopsis thaliana”, Proceedings of International Conference on Control, Automation and Systems, 20-23 Oct, Gwangju, Korea, pp. 241-246.

46. M. Foo, S.K. Ooi and E. Weyer, (2013), “Centralised and Decentralised Control of the Broken River”, Proceedings of European Control Conference, 17-19 Jul, Zurich, Switzerland, pp. 2561-2566.

47. M. Foo, S.K. Ooi and E. Weyer (2012), “Modelling of rivers for control design”, In System Identification, Environmental Modelling, and Control System Design (pp. 423-447). Springer London.

48. R. Adams, N. Bond, J.F. Costelloe, L. Croft, S. Cunnigham, R.J. Farquharson, M. Foo, B. Gawne, R. MacNally, A.M. Minard, J.W. Moreau, D. Nielsen, N. Ning, S.K. Ooi, T. Ramilan, M. Sammonds, G. Sites, D. Spring, M. Stewardson, G. Vietz, S. Watkins, A.W. Western and E. Weyer (2012), “Modern river operating systems”, In Farms, Rivers and Markets Project 2012, Farms, Rivers and Markets: Overview Report, Victoria, Ed. J. Langford.

49. M. Foo and E. Weyer (2011), “On reproducing existing controllers as Model Predictive Controllers”, Proceedings of Australian Control Conference, 10-11 Nov, Melbourne, Australia, pp. 303-308.

50. S.K. Ooi, M. Foo and E. Weyer (2011), “Control of the Broken River”, Proceedings of IFAC World Congress, 28 Aug-2 Sep, Milan, Italy, pp. 627-632.

51. M. Foo, N. Bedjaoui, E. Weyer (2010), “Segmentation of a river using the Saint Venant equations”, Proceedings of IEEE International Conference on Control Applications, 8-10 Sep, Yokohama, Japan, pp.848-853.

52. M. Foo, S.K. Ooi, E. Weyer (2010), “Modelling of river for control design” (invited paper), Proceedings of IEEE International Conference on Control Applications, 8-10 Sep, Yokohama, Japan, pp. 1862-1867.

53. T.T.V. Yap, A.H. Tan and M.F.L. Foo, (2007), “Modelling of direction-dependent systems using bilinear models”, Proceedings of IEEE Instrumentation and Measurement Technology Conference, 1-3 May, Warsaw, Poland (6 pages).

54. M.F.L. Foo, A.H. Tan and T.T.V. Yap, (2007), “Pseudorandom maximum length signal design with bias compensation least squares estimation for system identification”, Proceedings of IEEE Instrumentation and Measurement Technology Conference, 1-3 May, Warsaw, Poland (6 pages).

55. A.H. Tan and M.F.L. Foo, (2006), “Ternary pseudorandom signal design for uniform excitation and reduced effect of nonlinear distortion”, Electronics Letters, Vol. 42, Issue. 12, pp.676-677.

56. M.F.L. Foo, A.H. Tan and K.P. Basu, (2006), “Maximum length ternary signal design based on Nyquist point mapping” (invited paper), Proceedings of IFAC Symposium on System Identification, 29-31 Mar, Newcastle, Australia, pp. 1127-1132.

57. T.T.V. Yap, A.H. Tan and M.F.L. Foo, (2004), “Comparison of bilinear systems with direction-dependent systems”, Proceedings of UKACC Control, 6-9 Sep, Bath, United Kingdom (5 pages).

58. M.F.L. Foo, A.H. Tan and T.T.V. Yap, (2004), “Optimisation of a static nonlinear compensator for bilinear systems”, Proceedings of IEEE Instrumentation and Measurement Technology Conference, 18-20 May, Como, Italy, pp. 2187-2192.