A simple way to find related sequences with position-specific probabilities (RECOMB-CG, Seoul, 2025-04)
A better fundamental theory for finding related sequences? (Waseda University, 2024-08)
Polyploidy and meiosis (2023-09)
Comparing genetic sequences: algorithms (University of Tokyo, 2023-06)
Comparing genetic sequences: fundamental concepts (University of Tokyo, 2023-06)
How to optimally sample a sequence for rapid analysis (Genome Informatics Workshop, 2022-12)
Comparing genetic sequences: probability models (University of Tokyo, 2020-07)
Comparing genetic sequences: fundamental concepts (University of Tokyo, 2020-07)
Minimally-overlapping words for sequence similarity search (University of Tokyo, 2020-05)
Significance and probability in sequence analysis (University of Tokyo, 2020-05)
Some key concepts for meaningful sequence comparison (Marine Biotechnology Conference, 2019-09)
Retroviruses: exogenous and endogenous (2019-05)
DNA strands & coordinate systems (2019-02)
Probability models of genetic sequences (University of Tokyo, 2018-11)
Tools for nanopore sequencing analysis (Manado, Indonesia, 2018-07)
Significance and probability in sequence analysis (University of Tokyo, 2018-05)
Aligning and genotyping long DNA reads, with arbitrarily-complex mutations (Nanopore Day Tokyo, 2017-08)
Aligning sequences with arbitrary rearrangements and duplications (NGS5, Sendai, 2017-05)
Homology search & promoters: critical thinking in computational biology (University of Tokyo, 2017-05)
Part 1 (Part 2 is the same as the UMass talk below)
Finding similarities, homologies and rearrangements in huge bio-sequence datasets (University of Tokyo, 2017-01)
Comparing and aligning huge bio-sequence datasets, with application to genome rearrangements in hominid evolution (Waseda University, 2016-03)
Comparing bio-molecule sequences: motivations and methods (Waseda University, 2015-12)
Explaining the correlations among properties of mammalian promoters (University of Massachusetts, 2014-03)
Adapting classic statistical alignment to modern high-throughput DNA (MSKCC, 2014-03)