Nairiti J. Sinha, Dongdong Wu, Christopher J. Kloxin, Jeffery G. Saven, Grethe V. Jensen, Darrin J. Pochan. Polyelectrolyte character of rigid rod peptide bundlemer chains constructed via hierarchical self-assembly. 2019. Soft Matter. 15: 9858-9870. DOI: 10.1039/C9SM01894H
Dongdong Wu, Nairiti Sinha, Jeeyoung Lee, Bryan Sutherland, Nicole Halaszynski, Yu Tian, Jeffrey Caplan, Huixi Violet Zhang, Jeffery G. Saven, Christopher J. Kloxin, and Darrin J. Pochan. Polymers with Controlled Assembly and Rigidity Made with Click-functional Peptide Bundles. 2019. Nature. 574: 658-662. DOI: 10.1038/s41586-019-1683-4
Jin Xi, Jie Xiao, Jose Manuel Perez-Aguilar, Jinglei Ping, A.T. Charlie Johnson, Jr., JefferyG.Saven, Renyu Liu. Characterization of an engineered water-soluble variant of the full-length human mu opioid receptor. 2019. Journal of Biomolecular Structure and Dynamics. DOI: https://doi.org/10.1080/07391102.2019.1677502
Yu Tian, Huixi Violet Zhang, Kristi L. Kiick, Jeffrey G. Saven, Darrin J. Pochan. Fabrication of One- and Two-Dimensional Gold Nanoparticle Arrays on Computationally Designed Self-Assembled Peptide Templates. 2018. Chemistry of Materials, 30 (23): 8510–8520. DOI: 10.1021/acs.chemmater.8b03206
Yu Tian, Frank Polzer, Huixi Violet Zhang, Kristi L. Kiick, Jeffrey G. Saven, Darrin J. Pochan. Nanotubes, Plates, and Needles: Pathway-Dependent Self-Assembly of Computationally Designed Peptides. 2018. Biomacromolecules. 19: 4286–4298. DOI: 10.1021/acs.biomac.8b01163
Katherine W. Pulsipher, Joshua Bulos, Jose A. Villegas, Jeffery G. Saven, Ivan J. Dmochowski. Engineering A Protein-Protein Host-Guest Complex: Thermostable Ferritin Encapsulating Positively Supercharged Green Fluorescent Protein. 2018. Protein Science. 27: 1755-1766. DOI: 10.1002/pro.3483
Michael J. Haider, Huixi Violet Zhang, Nairiti Sinha, Jeffrey A. Fagan, Kristi L. Kiick, Jeffery G. Saven, Darrin J. Pochan. Self-assembly and soluble aggregate behavior of computationally designed coiled-coil peptide bundles. 2018. Soft Matter. 14(26):5488-5496. DOI: 10.1039/C8SM00435H
Jinglei Ping, Ramya Vishunbhotla, Jin Xi, Pedro Ducos, Jeffery G. Saven, Renyu Liu, A. T. Charlie Johnson. All-Electronic Quantification of Neuropeptide-Receptor Interaction Using a Bias-Free Functionalized Graphene Microelectrode. 2018. ACS Nano. 12(5): 4218–4223. DOI: 10.1021/acsnano.7b07474
Matthew J. Eibling, Christopher M. MacDermaid, Zhaoxia Qian, Christopher J. Lanci, So-Jung Park, Jeffery G. Saven. Controlling association and separation of gold nanoparticles with computationally designed zinc-coordinating proteins. 2017. The Journal of the American Chemical Society. 139: 17811–17823. DOI: 10.1021/jacs.7b04786
Yu Tian, Huixi Violet Zhang, Kristi L. Kiick, Jeffrey G. Saven, Darrin J. Pochan. Transition from disordered aggregates to ordered lattices: Kinetic control of a computationally designed peptide solution assembly. Organic & Biomolecular Chemistry 2017. 15: 6109-6118. DOI: 10.1039/C7OB01197K
Katherine W. Pulsipher, Jose A. Villegas, Benjamin W. Roose, Tacey L. Hicks, Jennifer Yoon, Jeffery G. Saven, Ivan J. Dmochowski. Thermophilic Ferritin 24mer Assembly and Nanoparticle Encapsulation Modulated by Interdimer Electrostatic Repulsion. Biochemistry 2017. 56 (28): 3596–3606. DOI: 10.1021/acs.biochem.7b00296
Jinglei Ping, Katherine W. Pulsipher, Ramya Vishnubhotla, Jose A. Villegas, Tracey L. Hicks, Stephanie Honig, Jeffery G. Saven, Ivan J. Dmochowski, A. T. Charlie Johnson. Structural-Functional Analysis of Engineered Protein-Nanoparticle Assemblies Using Graphene Microelectrodes. Chemical Science, 8, 5329-5334, 2017. DOI: 10.1039/C7SC01565H
Jinglei Ping, Jacquelyn E. Blum, Ramya Vishnubhotla, Amey Vrudhula, Carl H. Naylor, Zhaoli Gao, Jeffery G. Saven, and A. T. Charlie Johnson. pH sensing properties of flexible, bias-free graphene microelectrodes in complex fluids: from phosphate buffer solution to human serum. 2017. Small. 13(30): 1700564. DOI: 10.1002/smll.201700564
Itthipol Sungwienwong, Zachary M. Hostetler, Robert J. Blizzard, Joseph J. Porter, Camden M. Driggers, Lea Z. Mbengi, José A. Villegas, Lee C. Speight, Jeffery G. Saven, John J. Perona, Rahul M. Kohli, Ryan A. Mehl, and E. James Petersson. Improving Target Amino Acid Selectivity in a Permissive Aminoacyl tRNA Synthetase Through Counter-Selection. Organic & Biomolecular Chemistry. 2017. 15: 3603-3610. DOI: 10.1039/C7OB00582B
Jinglei Ping, Jin Xi, Jeffery G. Saven, Renyu Liu, and A. T. Charlie Johnson. Quantifying the effect of ionic screening on protein-decorated graphene transistors. 2017. Biosensors and Bioelectronics. 89:689-692. DOI:10.1016/j.bios.2015.11.052
Huixi Violet Zhang, Frank Polzer, Michael J. Haider, Yu Tian, Jose A. Villegas, Kristi L. Kiick, Darrin J. Pochan, Jeffrey G. Saven. Computationally designed peptides for predetermined nanostructure self-assembly: exterior sequence specifies lattice structure. Science Advances. 2016. 2(9):e1600307. DOI: 10.1126/sciadv.1600307
Carl Naylor, Nicholas Kybert, Camilla Schneier, Jin Xi, Gabriela Romero, Jeffery Saven, Renyu Liu, A.T.C. Johnson. Scalable Production of Molybdenum Disulfide-Based Biosensors. 2016. Nano Letters. 2016 10:6173–9. DOI: 10.1021/acsnano.6b02137
Nicholas F. Polizzi, Matthew J. Eibling, Jose Manuel Perez-Aguilar, Jeff Rawson, Christopher J. Lanci, H. Christopher Fry, David N. Beratan, Jeffery G. Saven, and Michael J. Therien. Photoinduced Electron Transfer Elicits a Change in the Static Dielectric Constant of a de Novo Designed Protein. The Journal of the American Chemical Society. 2016. 138: 2130–2133. DOI: 10.1021/jacs.5b13180
Lu Gao, Wenhao Liu, One-Sun Lee, Ivan J. Dmochowski, and Jeffery G. Saven. Xe Affinities of Water-Soluble Cryptophanes and the Role of Confined Water. Chemical Science. 2015. 6: 7238—7248. DOI: 10.1039/C5SC02401C
Wenjun Ouyang, Jeffery Saven, and Joseph Subotnik. The Simplest Surface Hopping Model of Electrochemistry: Non-equilibrium Electronic Transport Through an Ionic Solution. Journal of Physical Chemistry C. 2015. 119: 20833–20844. DOI: 10.1021/acs.jpcc.5b06655
David J. Niedzwiecki, Christopher J. Lanci, Gabriel Shemer, Phillip S. Cheng, Jeffery G. Saven, and Marija Drndić. Observing changes in the structure and oligomerization state of a helical protein dimer using solid-state nanopores. ACS Nano. 2015. 9(9):8907–8915. DOI: 10.1021/acsnano.5b02714
Jianghai Ho, Jose Manuel Perez-Aguilar, Lu Gao, Jeffery G. Saven, Hiroaki Matsunami, Roderic Eckenhoff. Molecular Recognition of Ketamine by Discrete Olfactory G Protein-Coupled Receptors. Science Signaling. 2015. 8(370): ra33. (Cover article). DOI: 10.1126/scisignal.2005912
Felipe Matsunaga, Lu Gao, Xi-Ping Huang, Jeffery G. Saven, Bryan L. Roth & Renyu Liu (2013). Molecular interactions between general anesthetics and the 5HT2B receptor. Journal of Biomolecular Structure & Dynamics. 2015. 33:211-218. DOI:10.1080/07391102.2013.869483
Sameer Sathaye, Huixi Zhang, Cem Sonmez, Joel Schneider, Christopher M. MacDermaid, Christopher B. Von Bargen, Jeffery G. Saven, Darrin Pochan. Engineering complementary hydrophobic interactions to control β-hairpin peptide self-assembly, network branching, and hydrogel properties. 2014. Biomacromolecules. 15(11):3891-3900.
Mitchell B. Lerner, Felipe Matsunaga, Gang Hee Han, Sung Ju Hong, Jin Xi, Alexander Crook, Jose Manuel Perez-Aguilar, Yung Woo Park, Jeffrey G. Saven, Renyu Liu, A.T. Charlie Johnson. Scalable Production of Highly-Sensitive Nanosensors Based on Graphene Functionalized with a Designed G-Protein Coupled Receptor. 2014. Nano Letters, 2014. 14: 2709–2714. DOI: 10.1021/nl5006349
Xuelian Zhao, Jose Manuel Perez-Aguilar, Felipe Matsunaga, Mitchell Lerner, Jin Xi, Bernard Selling, A. T. Charlie Johnson, Jr., Jeffery G. Saven, Renyu Liu. Characterization of a computationally designed water-soluble human mu opioid receptor variant using X-ray structural information. 2014. Anesthesiology. 121:866-875. PMID:24835677
Pravas Deria, Christopher D. Von Bargen, Jean-Hubert Olivier, Amar S. Kumbhar, Jeffrey G. Saven, and Michael J. Therien. Single-Handed Helical Wrapping of Single-Walled Carbon Nanotubes by Chiral, Ionic, Semiconducting Polymers. TheJournal of the American Chemical Society, 2013. 135(43): 16220–16234. DOI: 10.1021/ja408430v
H. Christopher Fry, Andreas Lehmann, Louise E. Sinks, Inge Asselberghs, Andrey Tronin, Venkata Krishnan, J. Kent Blasie, Koen Clays, William F. DeGrado, Jeffrey G. Saven, and Michael J. Therien. Computational De Novo Design and Characterization of a Protein that Selectively Binds a Highly Hyperpolarizable Abiological Chromophore. TheJournal of the American Chemical Society, 2013. 135(37):13914–13926. DOI: 10.1021/ja4067404
Christopher D. Von Bargen, Christopher M. MacDermaid, One-Sun Lee, Pravas Deria, Michael J. Therien, and Jeffery G. Saven. Origins of the Helical Wrapping of Phenylene-Ethynylene Polymers about Single-Walled Carbon Nanotubes. TheJournal of Physical Chemistry B, 2013. 117(42): 12953–12965. DOI: 10.1021/jp402140t
Jose Manuel Perez-Aguilar, Jin Xi, Felipe Matsunaga, Xu Cui, Bernard Selling, Jeffery G. Saven, and Renyu Liu.A computationally designed water-soluble variant of a G-protein-coupled receptor: the human mu opioid receptor. PLOS ONE. 2013. 8(6): e66009. doi:10.1371/journal.pone.0066009.
Jose Manuel Perez Aguilar, Renyu Liu, Jeffery G. Saven. Human mu Opioid Receptor Models with Evaluation of the Accuracy Using the Crystal Structure of the Murine mu Opioid Receptor. TheJournal of Anesthesia and Clinical Research. 2012. 3: 1000218.
Chaim A. Schramm, Brett T. Hannigan, Jason E. Donald, Jeffrey G. Saven, William F. DeGrado, Ilan Samish. Association and Orientational Preferences of Peptides and Proteins in Bilayers. Structure, 2012. 20: 924-935.
Christopher J. Lanci, Christopher M. MacDermaid, Seung-gu Kang, Rudresh Acharya,Benjamin North, Xi Yang, X. Jade Qiu, William F. DeGrado, Jeffery G. Saven. Computational Design of a Protein Crystal. Proceedings of the National Academy of Sciences USA, 2012. 109: 7304-7309.
Jose Manuel Perez Aguilar and Jeffery G. Saven, Computational Design of Membrane Proteins. Structure, 2012. 20:5-14. (Invited review)
Tanxing Cui, David Mowrey, Vasyl Bondarenko, Tommy Tillman, Dejian Ma, Elizabeth Landrum, Jose Manuel Perez-Aguilar, Jing He, Wei Wang, Jeffery G. Saven, Roderic Eckenhoff, Pei Tang, Yan Xu. NMR Structure and Dynamics of a Designed Water-Soluble Transmembrane Domain of Nicotinic Acetylcholine Receptor. Biochimica et Biophysica Acta (BBA) - Biomembranes, 2012. 1818: 617–626.
Renyu Liu, Jose Manuel Perez-Aguilar, David Liang, Jeffery G. Saven. Binding site and affinity prediction of general anesthetics to protein targets using docking. Anesthesia & Analgesia, 2012. 114: 947-955.
Renlong Zhou, Jose Manuel Perez-Aguilar, Qingsheng Meng, Jeffery G. Saven, and Renyu Liu, Opioid Binding Sites in Human Serum Albumin. Anesthesia & Analgesia, 2012. 114:122-128.
Juan E. Diaz, Chun-Shi Lin, Kazuyoshi Kunishiro, Birte K. Feld, Sara K. Avrantinis, Jonathan Bronson, John Greaves, Jeffery G. Saven and Gregory A. Weiss. Computational Design and Selections for an Engineered, Thermostable Terpene Synthase. Protein Science, 2011. 20: 1597-1606.
William Hiesinger, Jose Manuel Perez-Aguilar, Pavan Atluri, Nicole A. Marotta, John R. Frederick, J. Raymond Fitzpatrick III, Ryan C. McCormick, Jeffrey R. Muenzer, Elaine C. Yang, Rebecca D. Levit, Li-Jun Yuan, John W. MacArthur, Jeffery G. Saven, Y. Joseph Woo. Computational Protein Design to Reengineer Stromal Cell–Derived Factor-1α Generates an Effective and Translatable Angiogenic Polypeptide Analog. Circulation, 2011. 124: S18-S26.
Tom J. Petty, Soheila Emamzadah, Lorenzo Costantino, Irina Petkova, Elena S. Stavridi, Jeffery G. Saven, Eric Vauthey and Thanos D. Halazonetis, Induced fit dissociates p53 DNA binding off-rates from affinities, facilitating recognition of specific DNA sequences. The EMBO Journal, 2011. 30: 2167-2176.
J. G. Saven, Computational protein design: engineering molecular diversity, nonnatural enzymes, nonbiological cofactor complexes, and membrane proteins. Current Opinion in Chemical Biology, 2011. 15: 452-457.
Ilan Samish, Christopher M. MacDermaid, Jose Manuel Perez-Aguilar and Jeffery G. Saven, Theoretical and Computational Protein Design, Annual Reviews of Physical Chemistry, 2011. 62: 129-149.
Najat S. Khan, Jose Manuel Perez-Aguilar, Tara Kaufmann, P. Aru Hill, Olena Taratula, One-Sun Lee, Patrick J. Carroll, Jeffery G. Saven, Ivan J. Dmochowski, Multiple Hindered Rotators in a Gyroscope-Inspired Tribenzylamine Hemicryptophane. TheJournal of Organic Chemistry, 2011. 76:1418-1424.
Sang-Jae Park, Seung-gu Kang, Michael Fryd, Jeffery G. Saven, and So-Jung Park, Highly tunable photoluminescent properties of amphiphilic conjugated block-copolymers. TheJournal of the American Chemical Society, 2010. 132: 9931–9933.
H. Christopher Fry, Andreas Lehmann, Jeffrey G. Saven, William F. DeGrado, Michael J. Therien, Design and Elaboration of a Photo-Activatable De Novo Protein: A Heterotetrameric a-Helical Bundle that Selectively Binds an Emissive Abiological Porphinato(zinc) Chromophore. TheJournal of the American Chemical Society, 2010. 132: 3997–4005.
J. G. Saven, Computational protein design: advances in the design and redesign of biomolecular nanostructures. Current Opinion in Colloid and Interface Science, 2010. 15: 13-17.
Nathalie Griffon, Weijin Jin, Thomas J. Petty, John Millar, Karen O. Badellino, Jeffery G. Saven, Dawn H. Marchadier, Ellis S. Kempner, Jeffrey Billheimer, Jane M. Glick, Daniel J. Rader. Identification of the Active Form of Endothelial Lipase, a Homodimer in a Head-to-Tail Conformation. TheJournal of Biological Chemistry, 2009. 284: 23322-23330.
Ffrancon Williams, Guo-Fei Chen, Saba M. Mattar, Paul H. Scudder, Dwight A. Trieber II, Jeffery G. Saven, David C. Whritenour, Paola Cimino, and Vincenzo Barone. Magneto-structural relationships for radical cation and neutral pyridinophane structures with intrabridgehead nitrogen atoms. An integrated experimental and quantum mechanical study. TheJournal of Physical Chemistry A, 2009. 113: 9026-9034.
Mark E. Peterson, Feng Chen, Jeffery G. Saven, David S. Roos, Patricia C. Babbitt, and Andrej Sali. Evolutionary constraints on structural similarity in orthologs and paralogs. Protein Science, 2009. 18:1306 - 1315.
J. Tang, S.-G. Kang, J. G. Saven and F. Gai. Characterization of Cofactor-Induced Folding Mechanism of a Zinc Binding Peptide Using Computationally Designed Mutants. TheJournal of Molecular Biology, 2009. 389: 90-102.
Youn K. Kang, One-Sun Lee, Pravas Deria, Sang Hoon Kim, Tae-Hong Park, Dawn A. Bonnell, Jeffery G. Saven and Michael J. Therien. Helical Wrapping of Single-Walled Carbon Nanotubes by Water Soluble, Rigid Rod-like Poly(p-phenyleneethynylene). Nano Letters, 2009. 9: 1414–1418.
S. Szep, S. Park, E Boder, G. Van Duyne, J. G. Saven. Structural coupling between FKBP12 and buried water. Proteins: Structure, Function, Bioinformatics, 2009. 74: 603-611.
C. A. Butts, J. Swift, S.-G. Kang, L. Di Costanzo, D. W. Christianson, J. G. Saven, and I. J. Dmochowski. Directing Noble Metal Ion Chemistry within a Designed Ferritin Protein. Biochemistry, 2008. 47: 12729–12739.
McAllister, Karen; Zou, Hongling; Cochran, Frank; Bender, Gretchen; Senes, Alessandro; Fry, H.; Nanda, Vikas; Keenan, Patricia; Lear, James; Saven, Jeffery; Therien, Michael; Blasie, J. Kent; DeGrado, William. Using alpha-Helical Coiled-Coils to Design Nanostructured Metalloporphyrin Arrays. TheJournal of the American Chemical Society, 2008. 130: 11921-11927.
Andreas Lehmann and Jeffery G. Saven, Computational Design of Four-Helix Bundle Proteins That Bind Nonbiological Cofactors, Biotechnology Progress, 2008. 24: 74 -79. (Proceedings of First International Conference on Biomolecular Engineering (ICBE)).
Pascal Philibert, Audrey Stoessel, Wei Wang, Annie-Paule Sibler, Jeffery G. Saven, Jérôme Courtête, Etienne Weiss and Pierre Martineau, Construction of a large focused antibody library for intrabody selection. BMC Biotechnology, 2007. 7: 81(article number).
Gretchen M. Bender, Andreas Lehmann, Hongling Zou, Hong Cheng, H. Christopher Fry, Don Engel, Michael J. Therien, J. Kent Blasie, Heinrich Roder, Jeffrey G. Saven, and William F. DeGrado, De Novo Design of a Single Chain Diphenylporphyrin Metalloprotein. TheJournal of the American Chemical Society, 2007. 129: 10732-10740.
Seung-Gu Kang and Jeffery G. Saven, Computational protein design: structure, function and combinatorial diversity. Current Opinion in Chemical Biology, 2007. 11: 329-334.
Pramit Chowdhury, Wei Wang, Michelle R Bunagan, Jason W. Klemke, Jia Tang, Stacey Lavender, Jeffrey G. Saven, Barry S. Cooperman, Feng Gai, Fluorescence correlation spectroscopy study of serpin depolymerization by computationally designed peptides. TheJournal of Molecular Biology, 2007. 369: 462-473.
B. North, L. Cristian, X. Fu Stowell, J. D. Lear, J. G. Saven, W. F. DeGrado, Characterization of a Membrane Protein Folding Motif, the Ser Zipper, Using Designed Peptides. TheJournal of Molecular Biology, 2006. 359: 930-939.
J. Swift, W. A. Wehbi, B. D. Kelly, X. Fu Stowell, J. G. Saven, and I. J. Dmochowski, Design of Functional Ferritin-like Proteins with Hydrophobic Cavities. TheJournal of the American Chemical Society, 2006. 128: 6611-6619.
S. Park, Y. Xu, X. Fu Stowell, F. Gai, J. G. Saven and E. T. Boder, Limitations of yeast surface display in engineering proteins of high thermostability. Protein Engineering, Design & Selection, 2006. 19: 211-217.
J. Bronson, O.-S. Lee and J. G. Saven, Molecular dynamics simulation of a water soluble analog of the potassium channel KcsA. Biophysical Journal, 2006. 90: 1156-1163.
S. Park and J. G. Saven. Simulation of pH-dependent edge strand rearrangement in human b2 microglobulin. Protein Science. 2006. 15: 200-207.
M. R. Bunagan, X. Yang, J. G. Saven and F. Gai, Ultrafast Folding of a Computationally Designed Trp-cage Mutant: Trp2-cage. The Journal of Physical Chemistry B, 2006. 110: 3759-3763.
P. Biswas, J. Zou, and J. G. Saven, Statistical theory for protein ensembles with designed energy landscapes. TheJournal of Chemical Physics, 2005. 123:154908 (12 pages).
V. Nanda, M. M. Rosenblatt, A. Osyczka, H. Kono, Z. Getahun, P. L. Dutton, J. G. Saven, W. F. DeGrado, De novo design of a redox active minimal rubredoxin mimic. The Journal of the American Chemical Society, 2005. 127: 5804-5805.
S. Park and J. G. Saven, Statistical and molecular dynamics studies of buried water molecules in proteins. PROTEINS, Structure, Function, and Bioinformatics, 2005. 60: 450-463.
F. V. Cochran, S. P. Wu, W. Wang, V. Nanda, J. G. Saven, M. J. Therien, W. F. DeGrado, Computational de novo design and characterization of a four-helix bundle protein that selectively binds a non-biological cofactor. The Journal of the American Chemical Society, 2005. 127: 1346–1347.
S. Park, E. T. Boder, and J. G. Saven, Modulating the DNA affinity of Elk-1 with computationally selected mutations. The Journal of Molecular Biology, 2005. 348: 75-83.
X. Yang and J. G. Saven, Computational methods for protein design and protein sequence variability: biased Monte Carlo and replica exchange. Chemical Physics Letters, 2005. 401: 205-210.
S. Park, H. Kono, W. Wang, E. T. Boder, and J. G. Saven, Progress in the development and application of computational methods for probabilistic protein design. Computers & Chemical Engineering, 2005. 29:407-421.
S. Park, X. Yang, and J. G. Saven, Advances in computational protein design. Current Opinion in Structural Biology, 2004. 14: 487-494.
O.-S. Lee and J. G. Saven, Simulation studies of a helical m-phenylene ethynylene foldamer, The Journal of Physical Chemistry B, 2004. 108: 11988-11994.
Y. Zhu, X. Fu, T. Wang, A. Tamura, S. Takada, J. G. Saven, and F. Gai, Guiding the search for a protein’s maximum rate of folding, Chemical Physics, 2004. 307: 99-109.
A. Slovic, H. Kono, J. Lear, J. G. Saven, and W. F. DeGrado, Computational design and characterization of water-soluble analogues of the potassium channel KcsA. Proceedings of the National Academy of Sciences, 2004. 101: 1828-1833.
X. Fu, H. Kono, and J. G. Saven, Probabilistic approach to the design of symmetric protein quaternary structures. Protein Engineering, 2003. 16: 971-977.
J. R. Calhoun, H. Kono, S. Lahr, W. Wang, and W. F. DeGrado, and J. G. Saven, Computational design and characterization of a monomeric helical dinuclear metalloprotein. The Journal of Molecular Biology, 2003. 334: 1101-1115.
H. Kono and J. G. Saven, Combinatorial protein design. TheJournal of Biophysics (Japan), 2003. 43: 186-191.
J. G. Saven, Connecting statistical and optimized potentials for protein folding via a generalized foldability criterion, The Journal of Chemical Physics, 2003. 118: 6133-6136.
J. Zou and J. G. Saven, Using self-consistent fields to bias Monte Carlo methods with applications to designing and sampling protein sequences, The Journal of Chemical Physics 2003. 118(8): p. 3843–3854.
W. Wang and J. G. Saven, Designing gene libraries from protein profiles for combinatorial protein experiments, Nucleic Acids Research 2002. 30(21): e120.
J. G. Saven, Combinatorial protein design. Current Opinion in Structural Biology, 2002. 12: 453-458.
J. G. Saven, Designing protein energy landscapes. Chemical Reviews (thematic issue on Protein Design) 2001. 101(10): 3113-3130.
H. Kono and J. G. Saven, Statistical theory for protein combinatorial libraries. Packing interactions, backbone flexibility, and the sequence variability of a main chain structure. The Journal of Molecular Biology, 2001. 306: 607-627.
J. Zou and J. G. Saven, Statistical Theory of Combinatorial Libraries of Proteins. Energetic Discrimination of a Target Structure. The Journal of Molecular Biology, 2000. 296: 281-294.
R. B. Prince, J. G. Saven, P. G. Wolynes and J. S. Moore, The Cooperative Conformational Transition in Phenylene Ethynylene Oligomers: Chain-Length Dependence. The Journal of the American Chemical Society, 1999. 121: 3114-3121.
J. C. Nelson, J. G. Saven, J. S. Moore and P. G. Wolynes, Solvophobically Driven Folding of Nonbiological Oligomers. Science, 1997. 277: 1793-1796.
J. G. Saven and P. G. Wolynes, Statistical Mechanics of the Combinatorial Synthesis and Analysis of Folding Macromolecules. The Journal of Physical Chemistry B, 1997. 101: 8375-8389.
J. G. Saven and P. G. Wolynes, Local Signals and the Energy Landscape of Collapsed, Helical Proteins. Physica D, 1997. 107: 330-337.
M. D. Stephens, J. G. Saven and J. L. Skinner, Molecular Theory of Electronic Spectroscopy in Nonpolar Fluids: Ultrafast Solvation Dynamics and Absorption and Emission Line Shapes. The Journal of Chemical Physics, 1997. 106: 2129-2144.
J. G. Saven and P. G. Wolynes, Local Conformational Signals and the Statistical Thermodynamics of Collapsed Helical Proteins. The Journal of Molecular Biology, 1996. 257: 199-216.
J. Wang, J. G. Saven and P. G. Wolynes, Kinetics in a Globally Connected, Correlated Random Energy Model. The Journal of Chemical Physics, 1996. 105: 11276-11284
J. G. Saven, J. Wang and P. G. Wolynes, Kinetics of Protein Folding: The Dynamics of Globally Connected Rough Energy Landscapes with Biases. The Journal of Chemical Physics, 1994. 101: 11037-11043.
J. G. Saven and J. G. Skinner, A Molecular Theory of the Line Shape: Inhomogeneous and Homogeneous Electronic Spectra of Dilute Chromophores in Nonpolar Fluids. The Journal of Chemical Physics, 1993. 99: 4391-4402.
J. G. Saven, J. L. Skinner and J. R. Wright, Classical and Quantum Continuum Percolation with Hard Core Interactions.The Journal of Chemical Physics, 1991. 94: 6153-6159.