use SPIDEX

To use SPIDEX free non-commercial version 1 of SPIDEX with WGSA055 or WGSA06:

1. Create a folder named "spidex" under resources.

2. Obtain a copy of the file spidex_public_noncommercial_v1_0.tab.gz from deep genomics.

3. Put the the file spidex_public_noncommercial_v1_0.tab.gz in the spidex folder.

4. In the configuration file, choose s(np), i(ndel) or b(oth) in the option line beginning with "SPIDEX:".