Publications (chronological order)

Peer-reviewed articles

• J. Yuen-Zhou, C. Rodríguez-Rosario and A. Aspuru-Guzik, Time-dependent current-density functional theory for generalized open quantum systems, Phys. Chem. Chem. Phys., Special Issue on TD-DFT, 11, 4509, (2009). Selected as a "hot article" by the editors.

• J. Yuen-Zhou, D.G. Tempel, C. Rodríguez-Rosario and A. Aspuru-Guzik, Time-Dependent Density Functional Theory for Open Quantum Systems with Unitary Propagation, Phys. Rev. Lett. 104, 043001 (2010).

• J. Yuen-Zhou and A. Aspuru-Guzik, Quantum process tomography of excitonic dimers from two-dimensional electronic spectroscopy I: General theory and application to homodimers, J. Chem. Phys. 134, 134505 (2011). Also selected for the Virtual Journal of Quantum Information, April (2011) and the Virtual Journal of Ultrafast Science, May (2011). Also part of J. Chem. Phys. Editor's choice 2011.

• J. Yuen-Zhou, Jacob J. Krich, Masoud Mohseni, and A. Aspuru-Guzik, Quantum state and process tomography of energy transfer systems via ultrafast spectroscopy, Proc. Nat. Acad. Sci. USA. 108, 43, 17615 (2011).

• J. Yuen-Zhou, Jacob J. Krich, and A. Aspuru-Guzik, A witness for coherent electronic vs vibronic-only oscillations in ultrafast spectroscopy, J. Chem. Phys. 136, 234501 (2012).

• I. Kassal, J. Yuen-Zhou, and Saleh Rahim-Keshari, Does coherence enhance transport in photosynthesis, J. Phys. Chem. Lett. 4 (3), 362 (2012).

• J. Yuen-Zhou and A. Aspuru-Guzik, Remarks on time-dependent [current]-density functional theory for open quantum systems}, Phys. Chem. Chem. Phys. 15, 12626 (2013). Selected as a "hot article" by the editors.

• J. Yuen-Zhou, D. Arias, D. Eisele, J. J. Krich, C. Steiner, K. A. Nelson, and A. Aspuru. Guzik, Coherent exciton dynamics in supramolecular light-harvesting nanotubes revealed by ultrafast quantum process tomography, ACS Nano 8 (6) 5527 (2014).

• J. Yuen-Zhou, S. Saikin, N. Yao, and A. Aspuru-Guzik, Topologically protected excitons in porphyrin thin films, in press, Nature Materials 13, 1026 (2014).

• A. Johnson, J. Yuen-Zhou, A. Aspuru-Guzik, and J. Krich, Practical witness for electronic coherences, submitted to Journal of Chemical Physics, July 2014.

Non-peer-reviewed articles

• P. Rebentrost, S. Shim, J. Yuen-Zhou, A. Aspuru-Guzik, Characterization and quantification of the role of coherence in ultrafast quantum biological experiments using quantum master equations, atomistic simulations, and quantum process tomography, Procedia Chem 3, 332, (2011).

Chapters in books

• D. Tempel, J. Yuen-Zhou and A. Aspuru-Guzik, Master equation approach to Time Dependent Density Functional Theory for Open Quantum Systems, in Fundamentals of Time-Dependent Density Functional Theory, eds. M. A. L. Marques, N.T. Maitra, F. Nogueira, E. K. U. Gross, and A. Rubio (Lecture Notes in Physics 837, Springer-Verlag, Berlin-Heidelberg, 2011).

• J. Yuen-Zhou, J. J. Krich, I. Kassal, A. Aspuru-Guzik, The quantum process tomography approach to ultrafast spectroscopy, in Ultrafast Biomolecular Dynamics at the Nanoscale, eds. I. Burghardt and S. Haacke, Pan Stanford, in press (2014).

Books

• J. Yuen-Zhou, J. J. Krich, I. Kassal, A. Johnson, A. Aspuru-Guzik, Ultrafast spectroscopy: quantum information and wavepackets, IOP e-book, in press (2014).