SVseq2

Software accompaniment to

Jin Zhang, Jiayin Wang and Yufeng Wu, "An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data", BMC Bioinformatics 13(Suppl 6):S6, 2012. link

SVseq2: This version uses the BAM files of paired Illumina reads with soft-clip signature as input. It is very fast compared to SVseq. It calls both deletions and insertions.

SVseq2_Linux_64, executable compiled under 64 bits Linux.

README.TXT

Also see: SVseq1

Updated versions:

SVseq2_0_1, executable compiled under 64 bits Linux.

README2_0_1.TXT

SVseq2_2, executable compiled under 64 bits Linux.

README2_2.TXT

SVseq2_2.tar.gz, source code.