Introduction à l'imagerie biomédicale, Master 2 MMA, Université Paris Cité
Dates 2025 pour le projet :- Rapport : au plus tard le xx décembre 2025- Transparents de la présentation au format pdf : 48h avant la soutenanceAnalyse d'articles :Carluec Pattern-Theoretic Characterization of Biological Growth,U. Grenander, A. Srivastava, and S. Saini, IEEE TMI, 2007 (2nd lien)Houessou IMODAL: creating learnable user-defined deformation models, L. Lacroix, B. Charlier, A. Trouvé, B. Gris 2021Conche ** Functional Currents : a new mathematical tool to model and analyse functional shapes, N. Charon, and A. Trouvé, Journal of mathematical imaging and vision - Springer, 2014** A New Variational Model for Shape Graph Registration with Partial Matching Constraints, Y. Sukurdeep, M. Bauer, and N. Charon, SIAM Journal on Imaging Sciences, 2022Double diffeomorphism: combining morphometry and structural connectivity analysis, P. Gori et al., IEEE Transactions on Medical Imaging, 2018 Fouad Parsimonious Approximation of Streamline Trajectories in White Matter Fiber Bundles, P. Gori et al., IEEE Transactions on Medical Imaging, 2016Neau Predicting infant cortical surface development using a 4D varifold-based learning framework and local topography-based shape morphing, Islem Rekik et al., Medical Image Analysis, 2016Dalex ** A Bayesian Mixed-Effects Model to Learn Trajectories of Changes from Repeated Manifold-Valued Observations, Jean-Baptiste Schiratti et al., Journal of Machine Learning Research 18, 2017Samper Wavelet-Based Multiscale Initial Flow For Improved Atlas Estimation in LDDMM, Fleur Gaudfernau et al., SPIE Medical Imaging, 2023Model-Driven Harmonic Parameterization of the Cortical Surface: HIP-HOP, Guillaume Auzias et al., IEEE Transactions on Medical Imaging, 2013Ait-Ali-Braham A Reaction-Diffusion Model of Human Brain Development, Julien Lefèvre, and Jean-François Mangin, PLoS computational biology, 2010Cheng SPANOL (SPectral ANalysis Of Lobes): A spectral clustering framework for individual and group parcellation of cortical surfaces in lobes, J Lefèvre et al., Frontiers in Brain Imaging Methods, 2018Motoyama Robust retinal vessel segmentation via locally adaptive derivative frames in orientation scores. J. Zhang et al., IEEE transactions on medical imaging, 2016Ishema Fuzzy c-means clustering with spatial information for image segmentation, Keh-Shih Chuang et al, Computerized Medical Imaging and Graphics, 2006
de paire avec A Non-Local Fuzzy Segmentation Method : Application to Brain MRI, B. Caldairou et al., 2010Tanon Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration, B.T. Thomas Yeo et al., IEEE Trans Med Imaging. 2010Ait-Kaci U-Net: Convolutional Networks for Biomedical Image Segmentation, O. Ronneberger, P. Fischer, and T. Brox, MICCAI 2015 de paire avec Attention U-Net: Learning Where to Look for the Pancreas, Ozan Oktay et al., 2018Camara CorticalFlow: A Diffeomorphic Mesh Deformation Module for Cortical Surface Reconstruction, Léo Lebrat et al., Neurips 2021