H. A SOULA

Publications

1. B Le Gac M Tournissac E  Belzic S  Picaud I Dusart H Soula D Li S  Charpak B Cauli Elevated pyramidal cell firing orchestrates arteriolar vasoconstriction through COX-2-derived prostaglandin E2 signaling 2025 elife  https://doi.org/10.7554/eLife.102424

2. A Dauger, H Soula, C Audebert Adipocyte size distribution: Mathematical model of a tissue property  2025 Mathematical Biosciences, 109433

3. A. Marandon, T, Rebafka, N. Sokolovska, H. Soula Conformal novelty detection for multiple metabolic networks 2024 BMC Bioinformatics volume 25, Article number: 358 (2024) 

4. AS Giacobbi, L Meyer, M Ribot, R Yvinec, H Soula, C Audebert Mathematical modeling of adipocyte size distributions: identifiability and parameter estimation from rat data 2024 Journal of Theoretical Biology 111747

5. E Serrano, JP Bastard, L Trystram, S Fellahi, HA Soula S Thenet, JM Oppert, K. Clément, C. Poitou, L. Genser Serum Versus Fecal Calprotectin Levels in Patients with Severe Obesity Before and 6 Months After Roux-Y-Gastric Bypass: Report of the Prospective Leaky-Gut Study  Obesity Surgery, 2023 

6. L Voland, M Yuan, S Lecoutre, J Debédat, V Pelloux, M Pradeau, E Coles, Fa Merabtene, C Zhang, A Mardinoglu, T Le Roy, H. Soula, K. Clément Tissue pleiotropic effect of biotin and prebiotic supplementation in established obesity.  American Journal of Physiology-Endocrinology and Metabolism 2023

7. EJ El Hachem, N Sokolovska, H Soula Latent dirichlet allocation for double clustering (LDA-DC): discovering patients phenotypes and cell populations within a single Bayesian framework 2023 BMC bioinformatics 24 (1), 1-15

8. S. Lecoutre F Merabtene E. El Hachem C. Gamblin C. Rouault N. Sokolovska H. Soula W. S.Lai PJ. Blackshear K. Clément. I. Dugail Beta-hydroxybutyrate dampens adipose progenitors’ profibrotic activation through canonical Tgfβ signaling and non-canonical ZFP36-dependent mechanisms Molecular Metabolism 2022 https://doi.org/10.1016/j.molmet.2022.101512

9. J Lacoste, H Soula, A Burg, A Audibert, P Darnat, M Gho, S Louvet-Vallée A neural progenitor mitotic wave is required for asynchronous axon outgrowth and morphology Elife  2022 11, e75746

10. Cooiman MI, Alsters SIM, Duquesnoy M, Hazebroek EJ, Meijers-Heijboer HJ, Chahal H, Le Beyec-Le Bihan J, Clément K, Soula H, Blakemore AI, Poitou C, van Haelst MM. Long-Term Weight Outcome After Bariatric Surgery in Patients with Melanocortin-4 Receptor Gene Variants: a Case-Control Study of 105 Patients Obes Surg 2022 Jan 4. doi: 10.1007/s11695-021-05869-x

11. Ayari S, Gil-Iturbe E, le Gléau L, Osinski C, Kapel N, Soula HA, Leturque A, Andreelli F, Clément K, Serradas P, Ribeiro A. Hnf4g invalidation prevents diet-induced obesity via intestinal lipid malabsorption J Endocrinol  2021 Nov 24;252(1):31-44. doi: 10.1530/JOE-21-0092.

12. Zaupa M, Naini SMA, Younes MA, Bullier E, Duboué ER, Le Corronc H, Soula H, Wolf S, Candelier R, Legendre P, Halpern ME, Mangin JM, Hong E. Trans-inhibition of axon terminals underlies competition in the habenulo-interpeduncular pathway. Curr Biol. 2021 Sep 8:S0960-9822(21)01187-8. doi: 10.1016/j.cub.2021.08.051.  PMID: 34529937.

13. Le Gléau L, Rouault C, Osinski C, Prifti E, Soula HA, Debédat J, Busieau P, Amouyal C, Clément K, Andreelli F, Ribeiro A, Serradas P. Intestinal alteration of α-gustducin and sweet taste signaling pathway in metabolic diseases is partly rescued after weight loss and diabetes remission  Am J Physiol Endocrinol Metab. 2021 Sep 1;321(3):E417-E432.

14. Weber Zendrera A, Sokolovska N, Soula HA Functional prediction of environmental variables using metabolic networks Scientific reports 11 (1), 1-11 2021

15. Osinski C, Le Gléau L, Poitou C, de Toro-Martin J, Genser L,  Fradet M, Soula H, Leturque A, Blugeon C, Jourdren L, Hubert E, Clément K,  Serradas P, Ribeiro A Type 2 diabetes is associated with impaired jejunal enteroendocrine GLP-1 cell lineage in human obesity.  Int J. Obs 2021 1-14 

16. Postal BG, Ghezzal S, Aguanno D, André S, Garbin K, Genser L, Brot-Laroche E, Poitou C, Soula H, Leturque A, Clément K, Carrière V. AhR activation defends gut barrier integrity against damage occurring in obesity. Mol Metab. 2020 Apr 28:101007

17. Weber Zendera A, Sokoloska N, Soula HA Robust structure measures of metabolic networks that predict prokaryotic optimal growth temperature BMC Bioinformatics volume 20, 2019 Article number: 499  

18. Denizot A, Arizono M, Nägerl UV, Soula H, Berry H. Simulation of calcium signaling in fine astrocytic processes: Effect of spatial properties on spontaneous activity. PLoS Comput Biol. 2019 Aug 19;15(8):e1006795 

19. Prior NH, Fernandez M. S. A., Soula HA, Vignal C Water restriction influences intra-pair vocal behavior and the acoustic structure of vocalisations in the opportunistically breeding zebra finch (Taeniopygia guttata) Behav Processes 2019

20. Soula HA Carnino D Fernandez MSA Perez EC Villain AS Vignal C Stress-induced flexibility and individuality in female and male zebra finch distance calls Behavioural processes 2019 163, 113-120

21. Genser L, Aguanno D, Soula HA, Dong L, Trystram L, Assmann K, Salem JE, Vaillant JC, Oppert JM, Laugerette F, Michalski MC, Wind P, Rousset M, Brot-Laroche E, Leturque A, Clément K, Thenet S, Poitou C. Increased jejunal permeability in human obesity is revealed by a lipid challenge and is linked to inflammation and type 2 diabetes. J Pathol. 2018 Jul 9. doi: 10.1002/path.5134

22. Prior NH, Fernandez M. S. A., Soula HA, Vignal C Rapid effects of sex steroids on zebra finch (Taeniopygia guttata) pair maintenance  Behav Neurosci. 2018 Dec;132(6):536-546

23. Yi D, Bernardes Monteiroa E, Chambert S, Soula H.A Daleprane JB, Soulage CO Determination of the binding properties of p-cresyl glucuronide to human serum albumin Biochimie. 2018 Jul;150:1-7

24. Fernandez MSA, Vignal C Soula HA Impact of group size and social composition on group vocal activity and acoustic network in a social songbird Animal Behaviour 2017 127, 163-178 

25. Fernandez MSA, Soula HA, Mariette MM, Vignal C. A new semi-automated method for assessing avian acoustic networks reveals that juvenile and adult zebra finches have separate calling networks. Front. Psychol. 2016 https://doi.org/10.3389/fpsyg.2016.01816

26. Soula HA Generalized Stochastic simulation algorithm for Artificial Chemistry to appear in Proc. ALIFE XV, Cancun, Mexico 2016 pdf

27. Saldanha JF,Yi D,  Stockler-Pinto MB, Soula HA, Chambert S, Fouque D, Mafra D,Soulage CO Determination of the binding properties of the uremic toxin phenylacetic acid to Human Serum Albumin  Biochimie 2016 125 53-58 pdf

28. Villain AS Fernandez MSA Bouchut C Soula HA Vignal C Songbird mates change their call structure and intra-pair communication at the nest in response to environmental noise to appear in Anim Behav 2016 pdf

29. Géloën A, Soula H, Hadji L, Berger E Hysteresis of White Adipose Tissue. Open Journal of Endocrine and Metabolic Diseases, (2015)  5, 138-147

30. Elie, JE Soula HA, Trouvé C, Mathevon N, Vignal C Housing conditions and sacrifice protocol affect neural activity and vocal behavior in a songbird species, the zebra finch (Taeniopygia guttata) Comptes rendus biologies 2015 338 (12), 825-837

31. Perez EC, Elie JE, Boucaud ICA, Crouchet T, Soulage CO, Soula HA, Theunissen FE, Vignal C Physiological resonance between mates through calls as possible evidence for basic empathic processes in songbirds Horm Behav. 2015 Sep 25;75:130-141

32. Jacquier M, Soula HA, Crauste F Mathematical Model of leptin resistance  Math. Biosc. 2015 Sep;267:10-23  pdf

33. Perez E*, Fernandez MSA*, Simon C. Griffith, Vignal C, Soula HA Impact of visual contact on vocal interaction dynamics of pair bonded birds Anim. Behav. 2015 107, 125-137 pdf

34. Lo Van A, Soula HA, Berry H Space-induced bifurcation in repression-based transcriptional circuits. BMC Syst Biol. 2014 Nov 8;8(1):125. pdf

35. Berry H, Soula HA, Spatial distributions at equilibrium under heterogeneous transient subdiffusion Front. Physiol. 2014 5:437 frontier

36. Soula HA, Geloën A, Soulage CO Model of adipose tissue cellularity dynamics during food restriction.J Theor Biol. 2014 Sep 6;364C:189-196 pdf

37. Hadji L, Berger E, Soula H, Vidal H, Géloën A adipose tissue resilience to insulin deprivation and replacement. PLoS One. 2014 Aug 29;9(8):e106214 plos

38. Jacquier M, Crauste F, Soulage CO, Soula HA  predictive model of the dynamics of body weight and food intake in rats submitted to caloric restrictions PLoS One. 2014 Jun 16;9(6):e100073 plos

39. Soula H, Caré B, Beslon G, Berry H. Anomalous versus Slowed-Down Brownian Diffusion in the Ligand-Binding Equilibrium. Biophys J. 2013 Nov 5;105(9):2064-73. doi: 10.1016/j.bpj.2013.07.023. pdf

40. Soula HA, Julienne H, Soulage CO, Géloën A Modeling adipocytes size distribution. J Theor Biol. 2013 Apr 30;332C:89-95. 2013 pdf

41. Caré BR, Soula HA, Receptor clustering affects signal transduction at the membrane level in the reaction-limited regime. Phys Rev E Stat Nonlin Soft Matter Phys. Jan;87(1)  2013 pdf

42. Koppe L, Pillon NJ, Vella RE, Croze ML, Pelletier CC, Chambert S, Massy Z, Glorieux G, Vanholder R, Dugenet Y, Soula HA, Fouque D, Soulage CO. p-Cresyl sulfate promotes insulin resistance associated with CKD J Am Soc Nephrol. 2013 Jan;24(1):88-99

43. Croze ML, Vella RE, Pillon NJ, Soula HA, Hadji L, Guichardant M, Soulage CO Chronic treatment with myo-inositol reduces white adipose tissue accretion and improves insulin sensitivity in female mice J Nutr Biochem. 2013 Feb;24(2):457-66

44. Soula HA, Coulon A, Beslon G Membrane microdomains emergence through non-homogeneous diffusion BMC Biophys. 2012 5(1):6 bmc

45. Caré BR, Soula HA Impact of Receptor clustering on the membrane-based stage of a signalling pathway BICoB 2012 Las Vegas, USA pdf

46. Caré BR, Soula HA The Effect of Membrane Receptor Clustering on Spatio- temporal Cell Signalling Dynamics Proceedings of the 9th International Conference on Information Processing in Cells and Tissues 2012, LNCS 7723:50-61 pdf

47. Perez EC, Elie JE, Soulage CO, Soula HA, Mathevon N, Vignal C The acoustic expression of stress in a songbird: does corticosterone drive isolation-induced modifications of zebra finch calls? Horm Behav 2012 61(4):573-81

48. Caré BR, Soula HA Impact of receptor clustering on ligands binding BMC System Biology 5(48) 2011 bmc

49. Coulon A, Beslon G, Soula HA Enhanced Stimulus Encoding Capabilities with Spectral Selectivity in Inhibitory Circuits by STDP’ Neural Computation Neural Computation 2011;23(4):882-908 

50. Elie JE, Soula HA, Mathevon N, Vignal C Dynamics of communal vocalizations in a social songbird, the zebra finch (Taeniopygia guttata) Journal of Acoustical Society of America 129(6):4037-4046 2011 pdf

51. Elie JE, Mariette MM, Soula HA, Griffith SC, Mathevon N, Vignal C Vocal communication at the nest between mates in wild zebra finches: a private vocal duet? Animal Behaviour 2010 80:597-605

52. Pillon NJ, Soulère L, Vella RE, Croze M, Caré BR, Soula HA, Doutheau A, Lagarde M, Soulage CO. Quantitative structure-activity relationship for 4-hydroxy-2-alkenal induced cytotoxicity in L6 muscle cells Chem Biol Interact. 2010 Oct 6;188(1):171-80.

53. Zarrouki B, Pillon NJ, Kalbacher E, Soula HA, Nia N'jomen G, Grand L, Chambert S, Geloen A, Soulage CO. Cirsimarin, a potent antilipogenic flavonoid, decreases fat deposition in mice intra-abdominal adipose tissue Int J Obes (Lond). 2010 34(11):1566-75

54. Soula H, Chow CC Stochastic dynamics of a finite-size spiking neural network Neural Comput. 2007 19 (12): 3262-3292 soula2007.pdf

55. Henry F, Dauce E, Soula H Temporal pattern identification using spike-timing dependent plasticity Neurocomputing 2007 70 (10-12): 2009-2016

56. Coulon A, Soula H,  Mazet O, Gandrillon O Beslon G Modélisation cellulaire pour l'émergence de structures multiprotéiques auto-organisées. 2007 Technique et Science Informatiques (TSI), 26:123–148.

57. Soula H, Beslon G Spike-timing dependent plasticity learning for visual-based obstacles avoidance From Animals to Animats  4095: 335-345 2006 pdf

58. Soula, H; Beslon, G; Mazet, O Spontaneous dynamics of asymmetric random recurrent spiking neural networks Neural Computation, 18 (1): 60-79 JAN 2006 

59. Soula, H; Beslon, G; Favrel, J Evolution versus learning in temporal neural networks Adaptive and Natural Computing Algorithms: 42-45 2005

60. E. Daucé, H. Soula, G. Beslon 'Learning Methods for Dynamic Neural Networks' international symposium on NOnLinear Theory and its Applications 2005 pdf

61. Cessac B, Mazet O, Samuelides M, Soula H 'Mean Field Theory for Random Recurrent Spiking Neural Networks' international symposium on NOnLinear Theory and its Applications 2005 pdf

62. Soula, H; Robardet, C; Perrin, F; Gripon, S; Beslon, G; Gandrillon, O Modeling the emergence of multi-protein dynamic structures by principles of self-organization through the use of 3DSpi, a multi-agent-based software BMC BIOINFORMATICS, 6: Art. No. 228 SEP 19 2005 bmc

63. Soula, H., Alwan, A., & Beslon, G. (2005, March). Learning at the edge of chaos: temporal coupling of spiking neurons controller for autonomous robotic. In Proceedings of the AAAI spring symposia on developmental robotics. Palo Alto, CA: AAAI. conf

64. Beslon, G; Knibbe, C; Soula, H; Fayard, JM The RBF-gene model Adaptive and Natural Computing Algorithms, PROCEEDINGS: 187-192 2003

65. Soula, H; Beslon, G; Favrel, J Evolving spiking neurons nets to control an animat Adaptive and Natural Computing Algorithms: 193-197 2003

66. Beslon G, Soula H 'Laissez les vivre ! La codépendance temporelle comme clé de l'apprentissage de comportements chez un animat' TSI 22(2) (2003)

67. Soula H, Beslon G, Favrel J 'Controlling an animat with a self-organized modular neural model' European Workshop of Learning Robots, Prague, Czech Republic (2001)

68. Beslon, G; Soula, H; Favrel, J A neural model for animats brain Adaptive and Natural Computing Algorithms: 352-355 2001

Other publications 

1. Soula H, Caré B, Beslon G, Berry H Reply to the comment by V. P. Shkilev on Anomalous versus slowed-down Brownian diffusion in the ligand-binding equilibrium. Biophys J. 2014 Jun 3;106(11):2544-6