PubMed-EX

ObjectivesPubMed-EX is a browser extension that marks up PubMed search results with additional information retrieved from IISR & IASL text-mining services.

PubMed-EX’s page mark-up includes section categorization, gene/disease name, and relation. The mark-ups of PubMed-EX can help researchers quickly focus on key information in retrieved abstracts and can provide additional background information on key terms. Furthermore, our text-mining server carries out all text-mining processing, freeing up your computing resources.

PubMed-EX GUID: {64048836-6CD1-4A19-B201-485C33379162}

References

• http://bioinformatics.oxfordjournals.org/content/25/22/3031.abstract

• http://iisr.cse.yzu.edu.tw:8000/PubMed-EX/

• http://bws.iis.sinica.edu.tw/PubMed-EX/

• https://code.google.com/p/pubmed-ex/

• https://sites.google.com/site/pubmedannotationtool4ijcai/home

Availability

Mozilla Firefox

PubMed-EX is now available at mozilla Firefox Add-ons website: https://addons.mozilla.org/en-US/firefox/addon/pubmed-ex/.

I personally recommend to install this version, because it supports automatically update to the newest stable version. (The newest stable GM script version is available at http://userscripts.org/scripts/show/96779.) However, you can still find the newest beta version from https://code.google.com/p/pubmed-ex/.

Google Chrome

I am developing a new version of PubMed-EX on the Chrome. It will be a page action extension.

Features

• Facebook integration

Resources

• GREASESPOT

  • • User script compiler: An online tool that can be used to convert Greasemonkey userscripts into Firefox add-ons.

• • Fennec GM script compuler

  • JavaScript

  • jQuery

    • • clueTip: A jQuery tooltip plugin.

  • prototype

• • • Closure Compiler: A tool for making JavaScript download and run faster. The compiler compiles from JavaScript to better JavaScript. It parses the JavaScript source code, analyzes it, removes dead code and rewrites and minimizes what's left. It also checks syntax, variable references, and types, and warns about common JavaScript pitfalls.

    • Closure compiler service

• • YUI compressor

  • McCoy: An application that allows add-on authors to provide secure updates to their users. Applications periodically look for and install updates to their add-ons.

  • Automatic Firefox Extension Updates

  • GUID Generator

• • • GUID Generator: A utility for generating GUIDs (Globally Unique Identifiers).

    • GUID Generator Web Service.

• • HashCalc: A fast and easy-to-use calculator that allows to compute message digests, checksums and HMACs for files, as well as for text and hex strings. It offers a choice of 13 of the most popular hash and checksum algorithms for calculations.

  • Mozilla Firefox

  • Install.rdf - Mozilla Zine KB

  • Add-on Policies

  • Mozilla Fennec

  • Mobile/Fennec/Extensions/Electrolysis

  • Add-on development in Firefox Mobile

  • Version Control with Subversion: A free online book about Subversion, a new version control system designed to supplant CVS. This book has published by O'Reilly Media.

  • TortoiseSVN

  • IIS Log Analyzer: An IIS log analyzing tool. The tool analyzes IIS Web server in comprehensive graphs and reports.

  • ESummary: A NCBI service; Retreives document Summaries from a list of primary IDs or from the user's environment.

  • Google Chrome Extension:

  • Manifest files

  • Content Scripts

  • chrome.* API

  • MSDN

• • • JSON

    • Support for JSON and Other Data Transform Formats

    • JSON.stringify Function (JavaScript)

    • JSON.parse Function (JavaScript)

    • WCF

    • Introducing WCF WebHttp Services in .NET 4

    • Returning Custom Formats from WCF WebHttp Services

    • Integrating ASP.NET Output Caching with WCF WebHttp Services

• facebook

• • Social Plugins

  • How to Style an Application Like Facebook

  • Facebook C# SDK

  • Authentication

    • Facebook Connect for Chrome Extension

    • How to access Facebook API from Chrome Extension

• oAuth:

• • Beginner's Guide to OAuth

  • OAuth 2.0 from Chrome Extensions