Hannides, A., and Elko, E. (2024) South Carolina Beach Water Quality: Challenges, Needs and Recommendations, South Carolina Journal of Water Resources, 9(2): 9-13. tigerprints.clemson.edu/jscwr/vol9/iss2/5

Graham, J., Hannides, A., Mamnun, N., Sitz, L.E., Walsh, I.D., Wood-Charlson, E.M., and Ponsoni, L. (2022) Ocean Sciences Perspectives on Integrated, Coordinated, Open, Networked (ICON) Science, Earth and Space Science, 9: e2021EA002124, doi: 10.1029/2021EA002124.

Hannides, A., Elko, N., Roberts Briggs, T., Kim, S-C., Mercer, A., Park, K., Rosov, B., Searcy, R., and Walther, M. (2021) U.S. beach water quality monitoring, Shore & Beach, 89: 26-35, doi: 10.34237/1008933.

Legut, N.A., Hawkins, B.T., and Hannides, A.K. (2020) The role of a permeable sand column in modifying tidal creek nutrient inputs to the coastal ocean. Water, 12: 3079, doi: 10.3390/w12113079.

Hannides, A., Elko, N. and Humiston, K. (2019) An ASBPA white paper: The state of understanding of the effects of beach nourishment activities on coastal biogeochemical processes and conditions. Shore & Beach, 87: 46-57, doi: 10.34237/1008734.

Hannides, A.K. and R.C. Aller. (2016) A priming effect of benthic gastropod mucus on sedimentary organic matter remineralization. Limnology and Oceanography, 61: 1640-1650, doi: 10.1002/lno.10325.

Smith, C.R., Bernardino, A.F., Baco, A., Hannides, A., and I. Altamira (2014) Seven-year enrichment: macrofaunal succession in deep-sea sediments around a 30 tonne whale fall in the Northeast Pacific. Marine Ecology Progress Series, 515: 133–149, doi: 10.3354/meps10955.

Fram, J.P., G.P. Pawlak, F.J. Sansone, B.T. Glazer and A.K. Hannides (2014) Miniature thermistor chain for determining surficial sediment porewater advection. Limnology and Oceanography: Methods, 12: 155-165, doi: 10.4319/lom.2014.12.155.

Hannides, A.K., B.T. Glazer, and F.J. Sansone (2014) Extraction and quantification of microphyto-benthic chlorophyll a within calcareous reef sands. Limnology and Oceanography: Methods, 12: 126-138, doi: 10.4319/lom.2014.12.126.

Gao, Z., Wang, X., Hannides, A.K., Sansone, F.J., and G. Wang (2011) Impact of redox-stratification on the diversity and distribution of bacterial communities associated with sandy reef sediments in a microcosm. Chinese Journal of Oceanology and Limnology, 29: 1209-1223, doi: 10.1007/s00343-011-0316-z.

Schuster, U., Hannides, A.K., Mintrop, L., and A. Körtzinger (2009) Sensors and instruments for oceanic dissolved carbon measurements. Ocean Science, 5: 547-558, doi: 10.5194/os-5-547-2009.

Zielinski, O., Busch, J.A., Cembella, A.D., Daly, K. L., Engelbrektsson, J., Hannides, A.K. and H. Schmidt (2009) Detecting marine hazardous substances and organisms: sensors for pollutants, toxins, and pathogens. Ocean Science, 5: 329-349, doi: 10.5194/os-5-329-2009.

Treude, T., Smith, C., Wenzhöfer, F., Carney, E., Bernardino, A., Hannides, A.K., Krüger, M., and A. Boetius (2009) Biogeochemistry of a deep-sea whale fall: sulfate reduction, sulfide efflux and methanogenesis. Marine Ecology Progress Series, 382: 1-21, doi: 10.3354/meps07972.

Rusch, A., Hannides, A. K., and E. J. Gaidos (2009) Diverse communities of active Bacteria and Archaea along oxygen gradients in coral reef sediments. Coral Reefs, 28: 15-26, doi: 10.1007/s00338-008-0427-y.

Sørensen, K.B., Glazer, B., Hannides, A., and E. Gaidos (2007) Spatial structure of the microbial community in sandy carbonate sediment. Marine Ecology Progress Series, 346: 61-74, doi: 10.3354/meps06996.

Hannides, A.K., Dunn, S.M., and R.C. Aller (2005) Diffusion of organic and inorganic solutes through macrofaunal mucus secretions and tube linings in marine sediments. Journal of Marine Research, 63: 957-981, doi: 10.1357/002224005774464193.

Aller, R.C., Hannides, A.K., Heilbrun, C.E. and C. Panzeca (2004) Coupling of early diagenetic processes and sedimentary dynamics in tropical shelf environments: the Gulf of Papua deltaic complex. Continental Shelf Research, 24: 2455-2486, doi: 10.1016/j.csr.2004.07.018.

Book chapters

1) Hannides, A.K. and Smith, C.R. (2003) Chapter 7: The Northeastern Pacific Abyssal Plain, in Biogeochemistry of Marine Systems (eds K.D. Black and G.B. Shimmield), Blackwell Publishing, Sheffield, p. 208-237.

Policy reports and technical documents

As editor and contributor

Ulfsbo, A., A. Hannides, D. Atamanchuk, A. Poteau, S. Hartman, H. Bittig, Y. Voynova, B. Fiedler, A. Comeau, and P. Bresnahan (2017) Biogeochemical Parameters: pH. In: A user’s guide for selected autonomous biogeochemical sensors. An outcome from the 1st IOCCP International Sensors Summer Course [Lorenzoni, L., M. Telszewski, H. Benway, A. P. Palacz (eds.)]. IOCCP Report No. 2/2017, pp. 43-59.

DFMR (2015) Programmes of Measures of Cyprus in the framework of the implementation of the Marine Strategy Framework-Directive (2008/56/EC), (A.K. Hannides, Ed.), Department of Fisheries and Marine Research, Nicosia, Cyprus, pp. 42.

DFMR (2014) Monitoring Programmes of Cyprus in the framework of the implementation of the Marine Strategy Framework-Directive (2008/56/EC) Report on amendments resulting from discussions during the public consultation period (A.K. Hannides, Ed.), Department of Fisheries and Marine Research, Nicosia, Cyprus, pp. 23.

DFMR. (2014) Report on the monitoring programmes of Cyprus in the framework of the implementation of the Marine Strategy Framework-Directive (2008/56/EC) (A.K. Hannides, Ed.), Department of Fisheries and Marine Research, Nicosia, Cyprus, pp. 140.

DFMR (2014) Revision of Reports prepared in 2012 for the implementation of Articles 8, 9 and 10 of the Marine Strategy Framework-Directive (2008/56/EC) (A.K. Hannides, Ed.), Department of Fisheries and Marine Research, Nicosia, Cyprus, pp. 74.

DFMR (2012) Environmental Targets and Associated Indicators (A.K. Hannides, Ed.), Department of Fisheries and Marine Research, Ministry of Agriculture, Natural Resources and Environment, Nicosia, Cyprus, pp. 32.

DFMR (2012) Determination of Good Environmental Status of the Marine Environment of Cyprus (A.K. Hannides, Ed.), Department of Fisheries and Marine Research, Nicosia, Cyprus, pp. 89.

DFMR (2012) Initial Assessment of the Marine Environment of Cyprus (A.K. Hannides, Ed.), Department of Fisheries and Marine Research, Nicosia, Cyprus, pp. 260.

GEOTRACES (2011) GEOTRACES Mediterranean Planning Workshop, 4-6 October 2010, Nice, France - Workshop Report, GEOTRACES, Toulouse, pp. 49.

As lead/sole author

Hannides, A.K. (2014) Assessment of the existing monitoring network and activities of the Marine Environment Division of the Department of Fisheries and Marine Research of Cyprus, AP Marine Environmental Consultancy Ltd., Nicosia, Cyprus, pp. 8.

Hannides, A.K., et al. (2014) GROOM Deliverable D5.3 – Best practices for glider missions and sensor use: preparation, operation, calibration, inter-calibration/comparison, and recovery, GROOM Project, Paris, France, pp. 49.

Hannides, A.K., et al. (2014) GROOM Deliverable D5.2 – Sensors for gliders: existing, under development, and future sensors, GROOM Project, Paris, France, pp. 56.

As contributor

CSCS (2014) Baseline Environment of Block 12 of the Exclusive Economic Zone of the Republic of Cyprus, Noble Oil, Nicosia, Cyprus, pp. 82.

MCS, Aeoliki, CSA International. (2008) Strategic Environmental Assessment (SEA) concerning hydrocarbon activities within the Exclusive Economic Zone of the Republic of Cyprus, Ministry of Commerce, Industry, and Tourism, Nicosia, Cyprus, pp. 397.

GEOTRACES. (2007) GEOTRACES Atlantic Workshop, 10-13 September 2007, Oxford, UK - Workshop Report, GEOTRACES, Toulouse, pp. 47.

Klaric, Z. (2007) CAMP Cyprus: CAMP Cyprus: Carrying Capacity Assessment for Tourism of the Larnaca District, MAP PAP/RAC, Split, Croatia, pp. 48.

Graduate students

Morton, C.R. (2024) Tidal Creeks as Conduits of Land-Derived Nutrients to the Coastal Ocean, M.S. Thesis, Coastal Carolina University Link to Digital Commons

Olsen, M.E. (2024) Coastal-ocean and estuarine acidification in Long Bay, South Carolina: A comparison of in-situ water quality monitoring with measured carbonate system parameters, M.S. Thesis, Coastal Carolina University Link to Digital Commons

Birsch, R. (2020) Permeability of coastal sands: independent measurements and validation of predictive relationships, M.S. Internship, Coastal Carolina University

Dick, K.L. (2020) Incubation techniques and the investigation of biogeochemical activity of coastal sands and the modification of land-derived substances, M.S. Internship, Coastal Carolina University

Legut, N.A. (2019) The role of a permeable sand column in modifying tidal creek geochemistry and land-derived inputs to the coastal ocean, M.S. Thesis, Coastal Carolina University Link to Digital Commons

Undergraduate students

Calderone, J. (2025) Diel patterns of biogeochemical indicators in tidally-dominated creeks, B.S. Honors Thesis, Coastal Carolina University

Knill, C.R. (2025) Impacts of Point and Non-Point Sources in Two Urbanized Tidal Creek Systems, B.S. Senior Thesis, Coastal Carolina University

Dubé, L. (2025) Estuarine Eutrophication Risk and Urbanization, B.S. Senior Thesis, Coastal Carolina University

McCready, S. (2024) Drivers of the Formation of Sandy Shore Intertidal Biofilms, B.S. Senior Thesis, Coastal Carolina University

McHone, W. (2024) Impacts of Hurricane Idalia’s Surge on Coastal Sand Biogeochemistry, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Geraci, M.L. (2024) Fiddler Crab Gut Microbiomes as an Indicator for Eutrophication due to Waste-water Contamination in Estuaries, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Corbin, J.B. (2024) Sedimentary Conditions at a Tidal Creek that Exhibits Seasonal Pelagic-Benthic Variations, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Swantek, E. (2024) Effects of Urbanization on Eutrophication Parameters in three tidal creeks, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Padgett, Z. (2023) The Effect of Hurricane Ian on the Biogeochemistry of a South Carolina Sandy Beach Sediment Column, B.S. Senior Thesis, Coastal Carolina University

Easterling, N. (2023) Investigation of a Possible Switch of Benthic Photosynthetic Organisms and Phytoplanktonic Organisms in White Point Swash, South Carolina, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Abel, S. (2023) The Dynamics of Sedimentary Chlorophyll α at a High-Energy Beach, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Ballard, J. (2023) Suboxic and anaerobic respiration across a sandy-shore-to-estuarine gradient, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Diaz, L.G. (2021) Iron geochemistry across an estuary-to-coastal gradient, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Olsen, M.E. (2021) Isolated Point Discharges into Coastal Swashes as Nutrient Sources to Coastal Waters, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Christofferson, K.B. (2021) Organic matter spatial and temporal patterns in coastal sands of Long Bay, South Carolina, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Hawkins, B.T. (2019) Impacts of a swash outflow on sedimentary profiles of biogeochemical characteristics, B.S. Thesis, Coastal Carolina University

Workman, N.E. (2019) Character and water quality of Sandpiper Pond: A coastal pond assessment, fifteen years after restoration, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Echols, A.F. (2019) Dissolved Inorganic Nitrogen Speciation in Swash Zone Sands of Long Bay, SC: Effects of Sediment Permeability, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Jarrell, L.C. (2018) Characterizing diatom biofilms and their influence on the sand biogeochemistry of high energy beaches, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Ford, R.G. (2017) The Clean Air Act and Its Impact on Ground Level Ozone Pollution Levels in Los Angeles, California, B.S. Honors Thesis, Coastal Carolina University Link to Digital Commons

Hitt, A.J (2017) Chlorophyll a in intertidal sands of South Carolina, B.S. Thesis, Coastal Carolina University

Lee, M.A. (2017) Nitrogen cycling through stormwater retention pond systems – a modeling study, B.S. Honors Thesis, Coastal Carolina University

Legut, N.A. (2017) Filtration of seawater through the permeable seafloor of Long Bay, South Carolina, and its biogeochemical implications, B.S. Thesis, Coastal Carolina University

Undergraduate research articles and reports

Echols, A.F. (2020) Dissolved Inorganic Nitrogen Dynamics in Swash Zone Sands of Long Bay, SC, Bridges: A Journal of Student Research, 13, Article 4 Link to pdf

Bianchini, E.N., and A.K. Hannides (2019) Chlorophyll Dynamics at an Ocean-facing Sandy Beach, C-SURF Technical Report, 3, 1-4.

Ford, R. (2018) The Clean Air Act and Its Impact on Ground Level Ozone Pollution Levels in Los Angeles, California, Bridges: A Journal of Student Research, 12, 1-35 Link to pdf

Vess D., and A.K. Hannides (2018), Sedimentary Organic Matter Dynamics at a High-Energy Beach, C-SURF Technical Report, 2, 1-8.